RNA id: XM_021612543.2


Basic Information

Item Value
RNA id XM_021612543.2
length 4616
RNA type mRNA
GC content 0.47
exon number 8
gene id acbd3
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37817872 ~ 37851844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCTAAAAACGGAAGTAGGTACGTGGCCGCTTCAGGCAGCTGACATTCTGCATGATGGCGACAGAGGTTCAGAGCGCCGACCTCAACAATGGCAGTTCTAGCCGGCTCGAAGTCTCCATCGACGGCCTCACCCTCAGCCCCGACCCCGAAGGCGAGCAAGTCGCTGAACCTGACCATGATACCGGGGACCAGAGCGCCACCGACGATAGGGAAGAAGGCGAGTCTTCCAAAACCACGATAGAGAGGAAATGGGGCTTTGGTTTGCTGGAGCTATACAGACTAGCCTTGAAATTCTTCAAAGATAAGGATGGCAAGGCCTTCCACCCCACCTATGAAGAGAAGCTTCGTCTGGTGGCCCTCCACAAGCAGGTGTTACTGGGGCCATACAACCTCGACGCCTCTCCAGAGGTGGGCTTCTTTGACGTCCTGGGAAATGACCGCAGGAAAGAGTGGGCTGCTCTGGGTAACATGGAGAAGGAGGAGGCTATGGTGGAGTTTGTCAAGCTGTTGAACAAATGCTGTAATTTATTTGCACCCTATGTCACCTCCCACCAAATAGAGAAGGATGAGCAGGAGAGGAAACGgagggaggaggaggaacgaCAGCGCcgggaggatgaagagagggagcgaaagaggcaggaggaggagagacagatgatcgaagaggaggagaggctgaagagggaggaggaggagaggaggcagttgGAGGAGGAGAGGCTACGGGTAGAGCAGCAGAAACAGCAGATCATGGCAGCACTGAATGCCCAGACGGCAGTGCAGTTCCAGCAGTATGCTGCCCAGCAGTACCCAGAGAGCCCTGAGCAGCAGCTGGGTCTCATACACCAGCTACAGGAACAACACTACCAACAGTACATGCAGCAGCTCTACCAGGTCCAGCTGGCACAACAACAGGCAGCCTTACAGAAGCAGCAGGAGGATGCGGTGGTGAAGGCCACCCTGGAGGCCACTAGTGAGCCTGTAGCTGCAGCGCTCCCGGCTAGAGAGAAAGTCCCCTTGCTCAATGGCCAGTCAGACTCCCACTCTGAGGGCACGGACAGAGAGCCAGAGCGCTTAGAGCCTGCTGAGGAGGCCACTGAGAATGGGCCAATAGGTACACACACGCAAAGGCCagACTCTCCCCCAGTCATAGCAGCCCCCTCCATGTGGACGCGACCCCAGATCAAGGACTTCAAGGAGAAGATTCGGCAGGACGTGGACAGTGTGATCACGGTGGGGCGTGGCGAGGTAGTGACAGTGCGAGTGCCCACCCACGAGGAGGGCTCCTACCTCTTCTGGGAGTTTGCCACGGACCACTACGATATTGGCTTCGGAGTCTTCTTTGAGTGGACAGATTCCGCCAATGCCTCGGTCAGTGTGCACGTCAGCGAGTCCAGCGACGAAGATGAGGATGAGgaagGTGAGCCCCCTAGTGAGGAGGAGAAGGCTAAGAAAGAGGCAGGGAAGCCGCAGGTGGATGAGATAGTGCCGGTGTATCGGCGGGACTGTCACGAGGAGGTCTATGCCGGCAGTCACCAATACCCTGGCCGTGGGGTCTACCTTCTCAAGTTCGACAACTCTTACTCTCTTTGGAGGTCAAAAAGTGTCTACTACAGAGTCTACTACACCAGATAAGCCTGGAGGGACTACAGGAGACGGGGAGTGTGTGTttgaagagaggaaggggggatgAGATGATCTGTTCTGGACTAGATCTCCAGAGGGCGATGGAGTTGCGTTGGACTCCCGTTGGAGATGGgactcctgtctctgtgtgtgtgtgtgtgactcctgtctgtgtgtgtgtgtgtgtgcttacaccTCATTGGAGCCTGTGGAGTCCGGGAGGTAGTTAACCCTGTAGTGTGTTCACCACCTGTCGTCTTCTCGCTCTTAGAGATCAACTCTAGGACTTTCTTGTATTTAATGGCCATCTTTCCTGCCCAAACATCATCTAACCCTAGTCTGCCCTGTCATGTCATTGTTATGGCTGTGCTTCTCTCTGAGTGAGACACTCCTTAACCTGAGTTCAAATTTAACACAACTGAAGTCCATACAGGGTTGGGGCTTTGTCCAATGAGAGAAGTCATTGGTCAAACGGAGTCCAAACATAGtgacacactacactacagcaccaTGCCTTTGTACTTCAGAAGGAGTCCCTCATAGACCACCACGGAGTAACACTAAAACACACGCAGTCAGTTACTCCTCAAGTGGCAACGCTTCTATTGCAAGAGCTACACCCAAATCCACATCAACCCCTAGCTCCTACCAGCTACATACTTCTTGAGGTCTGAAAGGGTTGGATTTAAGGCATAAGCAATATTGCAGAATTTCTAGTATAGCTTGTCCTAGGCCATGGTGGAGCTATTATCATATTGATATTATCTAAGCAATCCTTTCAGATCGCCACAAGTGCAAACCGGGGAGGGGCTAGGGATTCATTTGGGATTGTACACTGTTCTACTGAGCGAAGGATGATGAAGAGCAAGGGGTTAGAAGGGGTATAGGGTTGGAAGAGGGATATGACATGTACATGGAAAAGTTCGGTATCTCAAAATGGAATGCTGAAAAAAGTGAGATTGTGTCTAAAAAGCATTTAATTCATATTTATTATTCACCCTTTCTTGTAGTGTAGGATCATTTTTGTGTCTGTATAATATTTGGGTGTATTTCATCTCCAAACAGTGGCCTCCCTGCTTCAGGAGACATGTCTTTTGGATGCTTCCTTTCCTTCATGGCCACTGATCTCAAAGGACATGAGAGGTGAAAATTATAGGGATGGAAACTTACCCATCTTTCCCTATCAGTGGCTATGAAGGacaggagacaaggaaaggaatcCAGTAAGGCGTATTGGGACACCCCCATGTCTGTTCTGAAGGAGACTGGGCATTGTCATCTATTGatcactcctgtgtgtgtgttgagtttgTCCATGGGACTGGAGATGCTAATCCTATTTCATACATACGAACTGCCGGCTAATAACTTAGAGGGAATCatcagttgaaacaataacaaattgAAATCCCCACccctgtttcagtaaaaagctgagggatagggctggagaaaggtaaccactctcaaattcattgacagagctatggttgcaaggactgaccatccatgattacaattatagttttaaccatatatagtgcttgtttacatttactttgtttaccaACATTGGAgtgaaacaagcttatatttgaaGTTCTGATGGGTTATGACAGTTGAACTGAAGTCATGAAGAATTTAACTTGGAAATGCCTCAAGAATCAATGGGAATATTTCATTCGTTCAGAAGTCCGAAGAGGGATGATGCAACTGCACATTCCCCTTTAAGATGAGTTTTACTGTGACCTCTCTCGAGCATTTGATCTTTCTGTCCTAATTGATGGATTGATTCcgattttatttttttctctcaaatagGACTGTCTGCCATCGCTAATAAACTGAGATGATCACGTCTAGCTCTCTAGTCATCCATGTCTCTTTGTTGAGAGTAATCAGTTACTAACTGAACTCAGACTGAGCTCTGAAGGTGTGTTTTTCTTTAACTCTTACTGTATGATCTCTTAGTTGTTTATCTTGTTGCCATTATTTGGTATTGTCCAGTCAGATGTTCCTCCACATTGCATCTGCATGCTTTGTGTTTCACTTGAAGTCAGTCAGCCACCAGGGTTTGTTTATTTAaagaaaaacaaatatttatttaactaggcaagtcagttaagatcaaattcttatttacaatgacggcctactccggccgaACCGTAACCCGGAcaccgctgggccaattgtgcgccgccctatgggactcccaatcacggccggttgtgatacaggctGGAATCAAATTCGGGAGCTGATCATTCTGTATGAATTGTTCTTCTTTTGAATTACTTTTTTGATGAATCATACCATTGTTTGGTTTCTGATGGGTTTTCAAGTCTCCTTTCCATTCAAAGATGCCTGACATTACCTTAACACTTAATAACGTCCACTGTGCCGAGGTTGGTTGCACATCAACAGGGGTCAGAAAGAGATTGAAATAGAATAAGGCCTACCGGTTAGCCAATCACCAACTCCGTCTCCTAGTTGTAGTTTGTACTGGTTGACTTGTGGCAATGGTTTTGACCCAGAAATGGAGAAATACATCATGCAAGGCACTATTGATGGTAAAGCTAGTTAGGAGCCACAAAGTTCAAGAAAGTCCCCATTGTTGAGATCTTTCATTGTGTTCTGTTCATTTGTCTGAACTACTTTTGCTCACCAACTTTAAGCCTAATGATACAGATTGTTCTAGCCTTGTAAGTATATCATTATATAAATGGGTTTAAGTGTGGGTtctagagatggggggggggggggggcatgagtTGAGAGTTGATGCACTGCAAAGTATGGAGAAGTGGATATTATGTACATTGTTCCCAAAAAAGTCAAACTCTAAAGTGTAAACTGAAAGACTGGATGAAATGTGGACGGGAAAGCTCATCCATTTTTGTATTGCTTTTACTTTTTTTGATCGTTATGCGTTTAAAGAAGAATCTGGCCTATTTAATATTGATTAAACTTATGTTCATCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800956 lncRNA downstream 3667 37813997 ~ 37814205 (-) True G704072
TU800955 lncRNA downstream 4267 37813067 ~ 37813605 (-) True G704071
TU800945 lncRNA downstream 13625 37804024 ~ 37804247 (-) True G704061
TU800942 lncRNA downstream 15509 37802048 ~ 37802363 (-) True G704058
TU800941 lncRNA downstream 16308 37801335 ~ 37801564 (-) True G704057
TU800981 lncRNA upstream 37058 37888902 ~ 37889213 (-) True G704094
TU800992 lncRNA upstream 45830 37897674 ~ 37898270 (-) True G704105
TU801001 lncRNA upstream 51376 37903220 ~ 37903437 (-) True G704114
TU801019 lncRNA upstream 64184 37916028 ~ 37916501 (-) True G704129
TU801046 lncRNA upstream 82908 37934752 ~ 37935205 (-) True G704154
XM_021612540.2 mRNA downstream 25144 37782174 ~ 37792728 (-) True sod2
XM_036985432.1 mRNA downstream 190912 37477332 ~ 37626960 (-) False LOC110530908
XM_021614211.2 mRNA upstream 7413 37859257 ~ 37879878 (-) True LOC110530910
LOC110530911 mRNA upstream 53326 37905170 ~ 37921411 (-) True LOC110530911
XR_002474628.2 mRNA upstream 78274 37930118 ~ 37931963 (-) True LOC110531088
XM_021612548.2 mRNA upstream 364001 38215845 ~ 38260820 (-) False LOC110529892
XM_036985440.1 mRNA upstream 364001 38215845 ~ 38260820 (-) True LOC110529892
TU800488 other downstream 325715 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 456279 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 1899697 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 1913600 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 2112559 35641355 ~ 35705313 (-) True LOC110529865
TU801610 other upstream 185881 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 461645 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1367800 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2105117 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4867927 42719771 ~ 42720699 (-) True G709272

Expression Profile