RNA id: LOC110530911


Basic Information

Item Value
RNA id LOC110530911
length 1771
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110530911
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37905170 ~ 37921411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGCGGCTCCAGCAGCACGCCAACAccgcctcggggacgacccggagggcgaggtgcagggcaATCCGGACAGAGACGGTGCAGCATAgaagggtccaacacgtcctcctctggaacccagcatctctcctccgtgCCGTACtgctcccagtccacgagaccacCCGGTcgtggccagctgcgacagagcctgggcgcaaacccagtcTCTGGTGGCAAAGCTAgagctgcgatgcagtgccatagaccactgcgccacccgggaggcctcACTGACCTTATCAATGACCCTGTAGGCCCTGAGCTCCCCGGCTGGACTCTGCTGACCCCCTCTGCTGATGGGGTTGACGCAAAGGGTGGGGCAAAAGGAGAGAAGACTCTGAATGACTTTGCAGTGGAGTATGCCAAGTTCAACAGCAGCACATGCAAAGAGTGTGAGGAAAAAATTGAAAAGTTTAAAATCCGTGTGTTTAACAAGACCGTGGACCCAGAGAAGCCCCAGCTTGGGTTGATACACCGCTGGTACCATACGGCCTGCTTCGTGGGTCTTCAAAGCAGAGTACAGCGCTGCCCAGCTCAAAGGCTTCAACACACTCAGGGGAAGACAAGGAGCTCAAGATGAGGCTGCCTGCCATTAAATCTGAAGGGACagacaacttttttttttcagGGACAGCCCTTATTTCCAAATTTGACATCTTTGATCTCCTAGAGGAGATGGAAGGAGTCTGGCGTGCGTGTCGTCTCAGAGGACTTCCCTCACAGACATCAAGTCATCTGGCAAGGCTATGCAGGAGCTGGTCTCCCTGAACACCATCTACACCTGGAGGACAGAGGTCAAACTAGAGACCCATGCTACAGTAGTAGCCTCCAAGTCTGGAGCCATGGCTGCCAAGAGCACTAGGAAGGTAAGGAATCGGATGCCAGTAAAGAAGATGAAACTGACTGAAAGGAGGGGCAGCAGTGGACCCAGATTCTGGTCTAGAGAACAGTGCTCACGTCCTGGAGCAAAACGACAAGATCTTTAGCGCTATGCTGGGTCTGGTGGACATCGTCAGGGGAACCAACTACAAACTGCAGCTGCTGGAGGACGATGTTCAGAAACGGGTGccactttctcGCTCCTGGGGCAGAGTGGGCACCACCATCGGGGGGCAATACGCTGGATAAGTTCCATGAGAAGAACTCTACCATGGACAACTTCCTTGGTGTGTATGAAGAGAAGACAAGCAACACCTGGGGTTCTTCCCACTTCACCAAGTACCCCAACAAATTCTACCCTCTGGCAATCGACTATGGACAGCATATCTTCAGAATCGTTAGGGAGGGAGAGTACCAGGGGTACTGCCCTTTCAAGGATCTGCCCAATCGTCAGCTACTGTTCTCGTGCCACCAACTATGCTGGTATCCTGTCTCGGGGTCTGCGCATCGCCCTGCCAGAGGCCCCCGTGATGGATTACATGTTTGGCAAAGGTGTGTACTTTGCAGACATAGTGTCCAAGTTCGCCAACTACTGCCACACCGCCCAGTCCAACCCTACTGGCCTCATTCTACTGAGAAAAGTTGCCCTCTGAAACagGCATGAACGTAAGAAGGCCCCGCACATCACAAAACTACCCAAGGGTAAACCAAGTGTGAAAGGTTTGGGTAGAAATGCCCCAGATTCTAGTGCCATTGTCACTTTAGACGGGGTGCAAGTGCCTGTGGGAAAAGGAACCAACACCAACATTGAAGTCTGCTGTACAACGAGTATCCTTTGCTTCCTCTGA

Function

GO:

id name namespace
GO:0006471 protein ADP-ribosylation biological_process
GO:0005634 nucleus cellular_component
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801001 lncRNA downstream 1733 37903220 ~ 37903437 (-) True G704114
TU800992 lncRNA downstream 6900 37897674 ~ 37898270 (-) True G704105
TU800981 lncRNA downstream 15957 37888902 ~ 37889213 (-) True G704094
TU800956 lncRNA downstream 90965 37813997 ~ 37814205 (-) True G704072
TU800955 lncRNA downstream 91565 37813067 ~ 37813605 (-) True G704071
TU801046 lncRNA upstream 13341 37934752 ~ 37935205 (-) True G704154
TU801597 lncRNA upstream 102121 38023532 ~ 38023778 (-) True G704689
TU801604 lncRNA upstream 108188 38029599 ~ 38029849 (-) True G704696
TU801605 lncRNA upstream 108608 38030019 ~ 38030248 (-) True G704697
TU801609 lncRNA upstream 114946 38036357 ~ 38036719 (-) True G704701
XM_021614211.2 mRNA downstream 25292 37859257 ~ 37879878 (-) True LOC110530910
XM_021612543.2 mRNA downstream 53326 37817872 ~ 37851844 (-) False acbd3
XM_021612544.2 mRNA downstream 53326 37817872 ~ 37851844 (-) False acbd3
XM_021612545.2 mRNA downstream 53326 37817872 ~ 37851844 (-) True acbd3
XM_021612541.2 mRNA downstream 53327 37817872 ~ 37851843 (-) False acbd3
XR_002474628.2 mRNA upstream 8707 37930118 ~ 37931963 (-) True LOC110531088
XM_021612548.2 mRNA upstream 294434 38215845 ~ 38260820 (-) False LOC110529892
XM_036985440.1 mRNA upstream 294434 38215845 ~ 38260820 (-) True LOC110529892
NM_001124558.1 mRNA upstream 363492 38284903 ~ 38302289 (-) True LOC100136309
XM_021612549.2 mRNA upstream 409282 38330693 ~ 38387308 (-) True LOC110529893
TU800488 other downstream 413013 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 543577 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 1986995 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 2000898 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 2199857 35641355 ~ 35705313 (-) True LOC110529865
TU801610 other upstream 116314 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 392078 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1298233 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2035550 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4798360 42719771 ~ 42720699 (-) True G709272

Expression Profile