RNA id: XM_021612548.2


Basic Information

Item Value
RNA id XM_021612548.2
length 3394
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC110529892
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38215845 ~ 38260820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTactgagcagacagacagataaggagagacagggggagtggaagaaagggagagagagagaagtaagagCAAGAGGCATGGGGGGAGCCAGGTgagatcagagagaggagagtgagggagaggaaagaTAAAGGATTAGGTGATAGTAGTCAGCGTGTTAGTGCCTGTACAGGTGAGTGGACTCTGAATAGGATTTCCCTTCAAGCTACAGGTGGAGAAAGCCTGATACAGGACCAACTGGATTTACAGAGTGCTGGAGGAAGGTCTTGAACCTCATGTGAAGATCCATGTGGTCACCCTAGCAGCTACACAGACTCACCCTCcgtcctacccctcctctcttcacAGACTACAGCCATGGAGTGCCAGGTGGAGGAGCTGAGGCAGCAGCTGGAGAAACAGACCCTAGTCAACCAGGAGCTGCAGAACCACAACAAGGACCTGGAAAGAAGACTGCAGGAGACGGAGAAGTTGCTGCAGGAGCTTCAGAGTCATTACCATGACCTGGACTTCCCTGATCAGAGGATCAGTAATGAAGGGGGACTTGTGGTCAGGAAGAGCAGAGTGGCTGTCATGGCCCCTGAGCCAATCCCAGAGGATCAGCAGGAGATCATAAAGACTAAAGTCAAGAAGACCGTCAGTGAGACGAGTCTGATCATCAAGGCCATCCAGAAGAATGACTTCCTGAGTCGCCTTGACGATGAGCAGATCACCATGATGGTGGAGCTCCTGGTGGCGATCGACTTCAAACCAGGAAATGATGTAATCAAGGAGGGCACTGAGGGAGACAGCATGTACATCGTAGCAGCGGGTGAGCTCCTTGTCAGTCAAGCAGATTGTAACCTTCGAACCCTgacctgtggggatgtttttggaGAGTTGGCTATTCTGTATAACTGCAAACGCACAGCCACAGTCAAAGCCAAGACAGTGGTGCGTCTGTGGTTTATGGAGAGACAGATGTATAGAACCATCATGACCAACAAGTCCAAGAAGAAACGTGAACAGCTAATGGGCTTCCTAAAAACGTCTCGGACTCTGAAGGCCCTAAATGACAGTCAGCTCTCTAAGATAATTGACTCCATGGAGGAGGTGAAGTACCAGAACAATGATGTCATTGTGCGTGAGGGGGCGGAGGGCAACACGTTCTACATCATTCTCAAAGGAGAGGTCAAGGTGACTAAGAAGTTGAATGGGCAGGAGAAACAGATTCGCAAGATGGGCAAAGGGGAGCATTTCGGGGAATTGGCCCTGATACGTGAAATCCTGAGGACTGCAACATGTACAGCTGTTGGCCCTGTGACCTGCTTCTCCATCGATAAGGAGGTGTTTGAGGAGACGATCCCCATTGAACACCTGGAGCTCCATGATGACATCAGCTCTAAGGTTTTGGAGGAGCCAGATGCTCCAGAGAAGACCAGTCCTAGTTCCTATCTGAGACTGAAGGACCTGATCCCCGTACTGTACCAGGAGGGGCGTTACCAGGGAGAACCTGTCACTCTCGGAGTGGGAGGGTTTGGTCGCGTTGAACTGGTGACCACTCTGCATCATGGAAAGTACTTTGCCATGAAGCGGGTCAGTAAGAAACACATTGTTGCCAAGCGACAGGAGGAGCACGTCCTGTTTGAGAAGAGGATCCTCAAAGCCATCAAGAGTGACTTCATTGTCAGGCTCCATTCTGCCTTCAAAGACACTCGCTACATCTACATGATTATGGAGTTCTGTGTAGGAGGGGAGATCTGGACCAAGCTGAAAGAAGTTGGGCGATTTGATGAGCCCATTGCCGTATTCTGCGCTGCCTGTGTAGTGGAGGCCTACGCCTACCTCCATAAAAAGGGCATCATGTACAGAGACCTCAAGCCTGAGAATCTGATGCTGGATGCCAAGGGCTACGTTAAACTGGTGGACTTTGGCTTTGCTAAGGAGTTAGTGCACGGTAATAAGACCTACTCATTCTGTGGTACTCCAGAATACATGGCCCCAGAAATCATCCAGAACCAGGGACATGACTTTGCTGCTGACTTCTGGTCCCTGGGCATCCTAGTCTATGAGCTGCTGGTGGGGAGCCCTCCATTCTCCAGTTCCGAGCCCGCGAAGATCTACCCTAAAATTTTGGACGGGGTGCTCAAGTTCCCACCTTACATGGGCGAGGGGGCCAAGTCCCTCATCAGTAAACTGTGCAGGCCTCGACCGGGTCAGAGGCTGGGAAACACCAAGAATGGGATTAAAGATGTACGCCACCACAGGTGGTTCAGCAGTATGAACTGGCACAAGCTGCGTGTGGGCCAGGTGGAGGCTCCTACAATCAGACTCATACGCAAGGGTCCGTGCTACATCAACTTTGATCGCTTCCCCTTCGACCAGGCTCTGGCTGATGAGGAGTTCTCCGGCTGGGACAAAAACCTCTGACTTGAACCAGAACCTGAAGCAGTCCAAGTGAGTCAGAGTTCAGAGGTCACGGGTTCACTGATAGATCTATCCAGATCAGACTACTTCTTGGTGACATTGGTTTACCCCTTACCTTTAAGACTCTGAACGCAATGTAGCGGTAGGGACTCGTGTGCTCATTGaaagctgtatgtgtgtgttgtgcccAAAAGAAAGATGAATTTAATTTTTAAAAAGTTTGAATGTAATGTCTCATGCTGGACAAAGATATGGTTTTACCGTTGACCCTCATTGTACTTTGTAATTTAGGATGGCATTATTGTTAGTATCTGTTGCTTGTAACATATACTGACTGTATATAATATTCAATGTATGTGTTTCAcattaaaataaatgtatacGTCACCAATGTCCCTTAAATGTATACATAGAGGAGAAAAGGTGCTTCAGTACATGTCATCACTGCTGGGTGGAGACTGAACAGGAATGCAGAGTCTGTTCTAAATGGAATCCTATACTGTGGTTTGGTACAGAGCACAGGTTTGGTATGACGTCAAGTACTATGTAGTATTTGAACATCATTACACACTTCCTCAGTGTCTGTTAGCTTGACTTAAGCTGTTTTACTTTACTGTGGTGAATCAATCAAGTCATCAGACCTCTAAGGACAAACAACTCTTATCAGGAGGGAATAAAACAACAAATCAATATGCCTAATCTGTGATGGTGGTCTGAAGTACATCTGATTTATGTTGGATTAAAAACGAACTGGATGATTGATCAACATGTTTGGTACAAGGGGAGTACAAATTGCCATTGACAATACTACTATTATGATTAATAATATTTTGTATATGCTGCCAAGGACAGCTTCCAGTGTTTGTTACTGCTGTTTTTCATTTGTGTATATCTTCCAGGCCATctttgtatactgaacaaaatataaatgaaacagtgttggtttcatgtttcatgaactgaaataaaaaatcccagacatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801638 lncRNA downstream 136226 38079402 ~ 38079619 (-) True G704730
TU801635 lncRNA downstream 139344 38076265 ~ 38076501 (-) True G704727
TU801620 lncRNA downstream 160046 38055577 ~ 38055799 (-) True G704712
TU801611 lncRNA downstream 176596 38039023 ~ 38039249 (-) True G704703
TU801609 lncRNA downstream 179126 38036357 ~ 38036719 (-) True G704701
TU801771 lncRNA upstream 19891 38280711 ~ 38281009 (-) True G704855
TU801778 lncRNA upstream 34967 38295787 ~ 38296061 (-) True G704862
TU801793 lncRNA upstream 54886 38315706 ~ 38316015 (-) True G704877
TU802070 lncRNA upstream 396549 38657369 ~ 38657680 (-) True G705135
TU802080 lncRNA upstream 404670 38665490 ~ 38665706 (-) True G705145
XR_002474628.2 mRNA downstream 283882 37930118 ~ 37931963 (-) True LOC110531088
LOC110530911 mRNA downstream 294434 37905170 ~ 37921411 (-) True LOC110530911
XM_021614211.2 mRNA downstream 335967 37859257 ~ 37879878 (-) True LOC110530910
XM_021612543.2 mRNA downstream 364001 37817872 ~ 37851844 (-) False acbd3
NM_001124558.1 mRNA upstream 24083 38284903 ~ 38302289 (-) True LOC100136309
XM_021612549.2 mRNA upstream 69873 38330693 ~ 38387308 (-) True LOC110529893
trnal-uaa-3 mRNA upstream 179378 38440198 ~ 38440280 (-) True trnal-uaa-3
LOC110530913 mRNA upstream 526693 38787513 ~ 38801952 (-) True LOC110530913
XR_005052874.1 mRNA upstream 561322 38822142 ~ 38824045 (-) False LOC118965515
TU801610 other downstream 177499 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 723688 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 854252 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 2297670 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 2311573 35900623 ~ 35904272 (-) False G701618
TU801790 other upstream 52669 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 958824 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 1696141 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4458951 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 4909940 43170760 ~ 43171082 (-) True G709454

Expression Profile