RNA id: XM_036985462.1


Basic Information

Item Value
RNA id XM_036985462.1
length 2869
RNA type mRNA
GC content 0.51
exon number 8
gene id slc22a16
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 39956961 ~ 40017167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCCCTATTTGCGCGCCCCTCCTACTCCGTGTTCAAGTGAAAGCCAACATTTACAAATTGTCAGTGGCGAGCCAGACCTGTCAACGAGTTATGAGCGTGGAGCGTATATTCGATGAGTTTGGACACTTCAAAAGGTTCCAGGCATGTCTGTACTTTGCTGCTGTCTTCCAAGCCATAGCCTGTGGAATCCACTACCTGGCCTCCGTGTTCCTCGTGGAGAGGCCAAACTTTGTCTGTGCTCCGCCAGGTAACATCACTGACGTCCTGTATGGGAACCACACTGGTGCTTCCCTGGAGGAGGTGCTACCATTCTTCAAACCGGCGAACGGGCCCATGGTGGTCCGAACGGCTGTGGGCCAACAGTGGGAGCTTAGCACCTGCCAGCGCACTCAGCGGATGAACCCCACAGATTTTACCTACGAGCAGGTCGTCAACAGGACGACGGAAAAGTGTGACGGGAACTACCATTACGTGTACGACCACAGTGAGGTGTATCAGAGCATCGTGACGGACTGGGACCTGGTGTGTGACAGGGAATGGCTGGCCAAGCTGTGTCAGCCCACGTTTATGATGGGGGTGCTGATCGGAGCACTGGTGTTTGGGGACATCGCTGATAGggttggCAGACAGAGGATCCTAATGATCACCAGCCTCTGCCAGTTTGTGTTTGGTGTAAGCGTGGCATTCATGGGAAACTACTACCTATTTATGGTCATCCGCTTCCTGCTCGCCATGGTGTCCAGCGGTTACCTTGTGGTGGTGTTTGTGTACGTGACCGAGTTCACCGGCAACAAGGTACGCACGTGGACCTCCATGCACGTGCACGCCGCCTTTGCCGCAGGCGTCATGATGGTGGCGATCACGGGCTACCTAGTGCGTACCTGGTGGATCTACCAGATCATCCTCTCCACCTGCACCTCGccctttctcttcttctgctgGAAGTTTCCAGAGACACCCTTCTACCTGATGGCTAAGGGGAGGCTCCAGGAGACCCAGGTCCTGTTGGATTCCATAGCCCGCTTCAACGGCCTGGAGCCTGGCCGTCTGAGGGCCGAGGACCTCCTGGAACCCAAGGAGGCTCTGCTGGAGAAAGAGATGGTACCGGGAAGAGCCCAGCCAGCGGAGCCCGAGAGAAAGCTGAGCATCCTGGACCTGTTTGGGACATGGAGGATGACCTGGAGGACAGTGACAGTGTGGGCAGTGTGGTTCATTGGCAGCCTGGGCTACTACGTCTTCTCCCTGGGCTCCGTCAACCTGGGTGGCAACCAGTACATCAACCTCTTCCTGGCTgGTGCAGTGGAGTTCCCTTCCTACCTGATTGGCTGTTATGCGATGGACCGGGTGGGCAGGAAGAGAACATGTGCCCCAGCTCTGCTGCTGGCTGGAACGGCCTGCATGCTCATCATTGTGGTGCCAAATGACATTGAGGTGTTAGTCATCATCCTCAGTATGACAGGGAAGTTTGCCATTGCCATAGCCTTTGGTCTCATCTACCTCTACACCTGTGAGCTCTACCCAACTATCATCAGGTCCCTGGCGGTGGGCAGTGGCAGTATGATGTGTCGTGTGGGCAGCATCGTGGCTCCTTTCTGTGTCTACCTAGCTGACATCTGGCAATACCTACCACAGCTGATTGTGGGGATCCTTGCGTTTATAATAGGTGTTCTGACCCTGTTGTTACCAGAGACCCTGGGTGAGCCCTTGACCAGCACCATGGAGGAGGCTGAGGCTCTAGGCAGGAAGAGTAGCCCTGATCAGGGAAAGAAAGACCctgaggagggggtggagatgaACTAGATCCAGAGCAACTAGTTGGACGGCAAGCCCTGAGGGATACACCTCACCACCAACCAGAGAGAAGGAGGTGgccagggatagagagggagtaggaagtggaggagagagagaaggagagagactacTGGAAGCGATACCAAGAAACCAACAAAATAAACAACCGCAAAAACAAACAACATCGAATTTGGAACCTTAGTAGAACTTTTTGtaataaagtgtttttttttacatttgttctGCAAAGTGGCCAATTTCAGAGCTGGTATGCTCTGGTTGAGCCAACCAACCGCAGCCAACCTCTGAGTTCCTTGGCTGCAGCtgttcagacagagacagagggaagtgAAGTGAAGGCCCTTTATTCACCACATCTCAGTCTCCTGATGAGAGCCACATGAAACTGAGCCTCATGTTCGATATTCACGTCACGTGTGCCTTCCAATCACAGCCACTAATGAATGTGTGTGCGAGAGattgagagtgagaaagaaagagtgtgCAGGTTCTATGAaggaagtgtgtgtgcatgcatgtgtgcgtgcatgcccgtgtgtgtgcgtttgaaatttgacgtttcaCTGACTGAGACTGTGATTTAGTTACCTCTATTCAGCCCGATGATCATCTAGTGCAGCTGATTTTGGCTATGTGTTACTAACAATGCTATTGTTATGTCATTTAAAGTGTACTTTGTTTATCTGAAGTCCAccgacacacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagaaaagtgCATAGTGTTTGTGTTTTCTATAAGTACTTTATACTGAATCTATCTCAGGGCATCCACCATAAGATATCACCGTGATAatatacagtgtatttggaaactagtctccttctccttttccacattttgtgacgttacagccttattctaaaatggattaaataaaataaaaatccttatcaatctacacacaatactccataatga

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU804140 lncRNA downstream 37373 39920496 ~ 39921996 (-) True G707129
TU804151 lncRNA downstream 51681 39907405 ~ 39907688 (-) True G707140
TU804148 lncRNA downstream 56268 39902621 ~ 39903101 (-) True G707137
TU804141 lncRNA downstream 64558 39894479 ~ 39894811 (-) True G707130
TU804128 lncRNA downstream 69186 39889955 ~ 39890183 (-) True G707119
TU804179 lncRNA upstream 7222 40024389 ~ 40024636 (-) True G707168
TU804249 lncRNA upstream 85433 40102600 ~ 40104160 (-) True G707234
TU804332 lncRNA upstream 247370 40264537 ~ 40269554 (-) True G707316
TU804379 lncRNA upstream 323279 40340446 ~ 40340669 (-) True G707362
TU804383 lncRNA upstream 329679 40346846 ~ 40347214 (-) True G707366
XR_002474630.2 mRNA downstream 905970 39050749 ~ 39053399 (-) True LOC110531091
XR_005052874.1 mRNA downstream 1135324 38822142 ~ 38824045 (-) False LOC118965515
LOC110530913 mRNA downstream 1157417 38787513 ~ 38801952 (-) True LOC110530913
trnal-uaa-3 mRNA downstream 1519089 38440198 ~ 38440280 (-) True trnal-uaa-3
XM_021612549.2 mRNA downstream 1572061 38330693 ~ 38387308 (-) True LOC110529893
XM_036986869.1 mRNA upstream 115024 40132191 ~ 40164976 (-) True LOC110530919
XM_036985463.1 mRNA upstream 126744 40143911 ~ 40145193 (-) False LOC118965516
XM_036985464.1 mRNA upstream 127065 40144232 ~ 40145193 (-) True LOC118965516
XM_021612562.2 mRNA upstream 621104 40638271 ~ 40668799 (-) False armc2
XM_036985472.1 mRNA upstream 621104 40638271 ~ 40668799 (-) False armc2
TU803684 other downstream 733056 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 1645566 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 1921023 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 2467212 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 2597776 37355096 ~ 37361593 (-) True LOC110529880
TU806574 other upstream 2702604 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 3153593 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 4521626 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 5440610 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 6293963 46311130 ~ 46325681 (-) True crfb16

Expression Profile

XM_036985462.1 Expression in all Baseline Samples

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XM_036985462.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036985462.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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