RNA id: XM_036986869.1


Basic Information

Item Value
RNA id XM_036986869.1
length 2370
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110530919
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40132191 ~ 40164976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTCAGACAACGACCAATAGAGAATTATATCCTGAAAGGTTTATACAATTAATTTCATTGATTAAATATTTAGATCACTCATCTATTGAAAACATAGGAGTGACTTCTGTCATCATAATATTTAACTAAACCATGACGTTTATTATATGTTTGTTCACGTTAATATTACAGAGTGAATACTTTACTTTTAGGACATTTCCGGTAGTGTAGTGCTTTCACAACTTCCAAGATGGCGGCCACCTTCGTTTCGTACTGGAGCGATTCAGATAATGAGACCAAATCTCATGTTAATCCCGAAAAGGTTGACCCCGATGCTCTGGCACATCTTCAACCGTTGAAATCTGGCAAAacaatgtcactgtctgtcctcaatTCAGCTCCTGAGGTCGCCGTAAAGGAGGCTGTGGAGACTGGCGTACATCTGGACCCCTCTCTCAAAGAGGTCACCTACAACCCCACATATGAAACCATGTTTGCGCCAGAGTTTGGTCCTGTCAACCCATATAAAAGTAAACGGATGGCTGCACCCAGGAATATGCTGTCTGGCTATGCAGAGCCTGCTCACGTCAATAACTTTATGTTTGAACAGCAGAGGAGGACCTTCTCCACCTTTGGCTATGCTCTGGATCCGTTTGTGGATACAAGCCAAAACTCCTCCAGTAGCTACATCGGTGCAGTGGACGAGGCAGAGAAAAAGAAAGGATTGACTGTGTTTGAGGTTGGCCCAAAGAAGACTGACAAGAGGAAAAAGGTGCAAGGAGGTGAAGCGAATGACATTGACATTGACAATTACCTCGGGCCCTGGGCGAAATACGTGGATGAAAAGGACGGTGCCAAACCATCAGAGGTGGAACAGAAGGAGCTGGACGAGATCACAGCCAAGAGGCAGAAGAAGGGAAGGAACGGGGAAGAGGCTCCGGCGGCGGAGAAGACCATTCTCCATGTCAAAGATGCGTACGACTACCAGGGGAGGTCATACCTCCACGTACCCCAAGACGTGGGCATCAACCGGCGTACTGCAGACATCCCAGACAAGTGTTACCTGCCCAAGAAACAGATCCACGTCTGGTCTGGACACACCaagggggTCAGTGCTATCCGTCTGTTTCCTGTGTCAGGTCACCTGCTGCTCTCCTGCTCTATGGACTGTAAGGTCAAGAACTCTGTTGCGGCGGACCGCCACAGTAAAGCAGTGCGGGATATCTGCTTTAACAACACTGGGTCTCAGTACATGAGTGCAGCCTACGACCGCTACCTCAAACTCTGGGACACCGAGACAGGCCAGTGTATCTCCCGCTTCACCAACAGAAAGGTGCCATACTGCGTCAAGTTCAACCCAGATGAAGACAAGCAGAATCTGTTTGTGGCTGGCATGTCTGATAAGATGATTGTTCAGTGGGACGTGAGGACAGGAGAGGTGGTTCAGGAGTATGACCGTCACCTGGGAGCGGTCAACACCATCACATTTGTGGATGAGAACCGCCGTTTCGTCAGCACATCTGACGACAAGTCCCTCCGCGTGTGGGAGTGGGACATTCCCGTGGactTTAAGTACATCGCAGAACCCAGTATGCACTCAATGCCTGCTGTAACACTCTCACCCAATGGTAAGTGGCTGGCCTGCCAGTCCATGGACAACCAAATCCTGATCTTTGGAGCCCAGAACCGTTTCCGTCTGAAcaagaagaagatcttcaaggGCCACATGGTGGCTGGCAATGCCTGCCAGGTGGACTTCTCCCCAGACATGAGCTATGTGGTGTCTGGCGATGCGGATGGGAAGCTTAATATCTGGGACTGGAAGACCACCAAGCTCTATCACCGGATCAAGGCCCACGACAAGGTGTGCATCAGCGCCCTGTTGCTGGGACAGACAGATCAAACTCTGGGACTAGAAACGTGGGGGTGCAGAGGGACTCCCTCTCATAATTTAATGGCAGCTGGTATCCAGTCCTGTTTTAACTCAGTGTATATTTCTACACCATCTGAAGAGGGGACACTGGTGGATTGAACTTTGAACTGGTGATGTTGACAAGCAGCTGTATAcatttgaagttggaagtttacatagacttaggttggagtcattaacttgtttttcaaccactccacaaatgtcttgttaacaaactatagttttggcaagtcggttaagacctctactttgtgcatgacacaagtaatttttccaacaattgtttacaagcAGATTATTTCGCTTATAATTCCACTGGGGCCGaagtttaaaagcacagtcaacttagtgtatgtaaacagctTGAAAAGTTCCAGAaagtgtcatggctttagaagcttctgataggctaattgacataatttgagtcaattgggggtgtacctgtgtaCG

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU804249 lncRNA downstream 28031 40102600 ~ 40104160 (-) True G707234
TU804179 lncRNA downstream 107555 40024389 ~ 40024636 (-) True G707168
TU804140 lncRNA downstream 210195 39920496 ~ 39921996 (-) True G707129
TU804151 lncRNA downstream 224503 39907405 ~ 39907688 (-) True G707140
TU804148 lncRNA downstream 229090 39902621 ~ 39903101 (-) True G707137
TU804332 lncRNA upstream 99561 40264537 ~ 40269554 (-) True G707316
TU804379 lncRNA upstream 175470 40340446 ~ 40340669 (-) True G707362
TU804383 lncRNA upstream 181870 40346846 ~ 40347214 (-) True G707366
TU804391 lncRNA upstream 192373 40357349 ~ 40357567 (-) True G707374
TU804430 lncRNA upstream 259178 40424154 ~ 40424902 (-) True G707408
XM_036985462.1 mRNA downstream 115024 39959369 ~ 40017167 (-) False slc22a16
XR_002474630.2 mRNA downstream 1078792 39050749 ~ 39053399 (-) True LOC110531091
XR_005052874.1 mRNA downstream 1308146 38822142 ~ 38824045 (-) False LOC118965515
LOC110530913 mRNA downstream 1330239 38787513 ~ 38801952 (-) True LOC110530913
trnal-uaa-3 mRNA downstream 1691911 38440198 ~ 38440280 (-) True trnal-uaa-3
XM_021612562.2 mRNA upstream 473295 40638271 ~ 40668799 (-) False armc2
XM_036985472.1 mRNA upstream 473295 40638271 ~ 40668799 (-) False armc2
XM_036985471.1 mRNA upstream 473295 40638271 ~ 40669501 (-) True armc2
XM_021612572.2 mRNA upstream 559421 40724397 ~ 40779631 (-) True LOC110529912
XR_005052876.1 mRNA upstream 614875 40779851 ~ 40800037 (-) False LOC118965517
TU804129 other downstream 172578 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 905878 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 1818388 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 2093845 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 2640034 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 2554795 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 3005784 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 4373817 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 5292801 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 6146154 46311130 ~ 46325681 (-) True crfb16

Expression Profile

XM_036986869.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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XM_036986869.1 Expression in each Bioproject

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XM_036986869.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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