RNA id: XM_036985469.1


Basic Information

Item Value
RNA id XM_036985469.1
length 3694
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110530920
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40166174 ~ 40323818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGTGAGGTGGCTCTCAAACAATAGAAAGTGGTACGTACCATCACAGTCTTTGCGATAGGTACATTTCCCCACGAAGTCAAGATTAGATTTTCTACTTTGCATTGATAAAATAGTTTCCTCGCCAGTGAATTAATCTTAAAATCGATTGTTGTAGTATCTGTTGCATTAGATTGTGCCCCCTGGAGCCCTTCTGGGAGGGAATAGTGCCTTGTTCCTTCGCTGCTGAACGTGAATCATTTCTCCCCGGCTATGATAACCAAAGCATGGAAGTGGGTTGGATTGGATCTGTCAACTGATAGAAACAGCGgcttgtactgtactgtagtagggaTGGCAAGAATATAGGAGGAATTGAACAGACATTTGAGGACCGGTCCTTGCCATTCTGCCGCCCAAGGTGAGACCAAAAGATGCCGCCCCCGCAAAACTAGAATAGTCACAGTGTGGTAGCCGAGGTCCAGGTATCCCAGGATGCCGTTGGTGAAGAGGAGTATCGAGCCCAGGCACCTGTGCCACACGGTGCTGCCGCGGGGCATTAAGAACGAGCTGGAGTGTGTGACCAATGTGTCCCTAGCTAATGTCATCCGACAGCTCAGCAGCCTCAGTAAGTACGCAGAGGATCTTTTTGGGGAGCTGTTCAACGAGGCCCACTCCTTCTCCTTCCGGGTCAACTCCCTCCAGGAGCGTGTCGACCGCCTCTCTATCAGCGTCACTCAGCTAGATCCTAAGGAGGAGGAGCTATCTCTCCAGGACATTACTATGAGGAAGGCATTTAGGAGCTCCACCATCCAGGACCAGCAGCTGTTTTCCCGCCAGTCGCTGCCCATCCCCCTGCAGGAGACGTTTGACCTCTGCGAGCAGCCACCACCCCTCAACATCCTCACACCCTACAGGGATGATGGTAAGGAGGGGCTGAAGTTCTACACAAACCCCTCCTACTTCTTTGACCTGTGGAGAGAGAAGATGCTGCAGGACACGGAGGACAAaaggaaagagaagaggaaaCAGAAGGTAAGGGGAAACGACCGTACTCTGGAGACTGAGAAGGTACCCCGGGCTCCTCACGACCGGAAGAAGGAGTGGCAGAAACTGGCGCTGGGGGCGGAGCTAGCTGAGGACAACTCTGAGGAGGCCTTGAAAGAAAGAGAGGCTAACGGCTCTGCCACCTACCACGACAGGTCTGGagctccTATGTACTTGGAAGGGATGGACGGGCCGTTCTCCCTAGCAGCGCTGCCCTACAGTCAAATGAACGAGCTACTGAACCGTCCTGGGGACAGAATGTACACGCGACCCCACGACCCCCCACCACTGCCCCCAATGCACCCTCTGGGAGACATCAAACCCCCCTCCATGATCAGctccaGTTCAGGTTTTTCAGACAGCAGACCCCAGTCTCCAGCACAGATGCATGGCTTCAATTCCaacacccctccccctccacctccccccttgcctcctccacctccccccttGCCTTCCATGTCCAGCTCTGGCCCACGGGGCACccctcctccccctatccctcctCTACCAGTCCAGCAGCAGACCCCAGccatcccccctccccccgcCCCCCTCCAGATTGCCCCTGGCGTCCTCCACCCTGCCCCTCCTCCCGTggctcctcccctccacctctcctccccggCACGCCTCCAACAGATCCTGGACAAGGGCCCACCCCCTCACCAATCAGATGGCACTGTACTGCCcccgccccctcctcctcctctgcccctCCCAGGAGCACGGATCTCCTCCCCCTGCCCGCCAGGCCCGCCCCCCGTGCCTTCCTTCCTGTCAGGTGCCGTGGGGTCCCCAGCCTCTCACTCCAGTGGAAAGAAACATTCTGCCAGCCTGCCACCCATCAGTGACGCACGCAGCGTCTTATTGGAGGCCATCCGCAAAGGTATCCAGCTCAGGAAggtggaggagcagagggagcagGAGGCGGCCAAACACGCGCGTGTGGGGAACGACGTGGCCACCATCCTGTCCCGACGCATCGCCGTCGAGTACTCCGACTCGGAGGATGAGTCGGAGTTCGACGAGGGAGACTGGATGGAGTGAAcgagatggatggagaggagaagagaaggggacagagggcAAAATTGTCACTCAACTGTACCCCCTTTCGAGACGTCAGAAGTTTGTCCTTACAACGCTGCTCTCCTCTGTCAGTCCTGTTTTACTTCCCTTTCATACACtactctacacccctctctctccctctctctctctctctctgtcaattacCGTTCTTCTATGTGTGTTCGGATGAAAAGCTCCACGTCAGTTGTATGTTCCATGTGTTCTGGTCGGGTTATGTTTTTGTACTCATTTTTCTACACTACTGCACATCGGTCAGTTGCTGTCATGTTATGTTCCTTCTTTATCCTCCAATATTATGAAATCCTCCTTGTGTACAGTTGTTTCCAAATGAAACCTTTTAAAGAAaaaacttttttgtttgttttcctgTTTGTTTCTCGCTGTTCAGTATTAGCGTAACAAAGTGGCATGACACTTCTGTCCTTAGTTCTGTCCTGCCTCCTGGTGGGCCAAAGTGGAGATGAATGGATTCTGTATTTTATTATCTCTTCTTGGAGTTTCTTTTCTAACAGAAAAACACATGCAGTTTTTAAATGGGCCAGTTGTTGCCAATATGAACTACTTGAAGGATGGTAGCCATCCTGAATACCAGTCGGCTGTGGTTATTTGCTGATGTGATTTATTGGAGTtgttctgtgttttatatcatcCGGATTTGACTTATCACCTAAGAACAAGGAAAATATTGTGATGATGATATGTTATGTGATGATTGTTGTCTGATTCTGATGATGAAGATAAAGAAGAATTATGGTGAGATATTAGAATAATCAGAACCACTTAACAGTAGTGTCCCACTGGGAACACACAGGtttaatcaacgttgtttccacttaatttcaatgaaattatgttgaaccaacgtggaatagatgttgagtTGACGTCTTTGCTCAGTGGGGTCTGAGCAATAGGAACCACTTTTAGAAGGCAGATTATTTCCTGGGTTCCCTCTCTGTGTGTCAACTAACGAGAAGCTTTACCTCGTTTGACTCTAGAACACTAaataagggctctattcaatctgtatcgctgaagtgTTACAGATTGTGCAATACACATTTTAAgataatttccgattgagccgacaggTGCTGCATTTACTGTGAATGCGGTCTCCGTTAACTTGGGAaaattgcctttacatttcaatcacgctgtaatgCTGATCTTCAGCGATACacattgaatagagccctaacagTTACTATGAAGAATTTAAATGAATTAACGCCATTAGTCTACCCGTGTTTCTGCTGCCAAGGGGGTGGGGCCATGATGAGAAAGAAGGATTCATCTGCCTTCACGGCTCCCTTTGAAGATGCCTGCAGTCCTTTTCTTTCTTTTGTTCTTTCTTCTACTTGccttattgtttgtacagacatATCGTTGAGTTGATGAATGTATTGTGCTGTTACTACTTTTTGCCTGTTCTGGTATGAATTAACTGTTTCTATGTttggggagtgggagagaggaaaaTGAACCCTGGGTTCAAACAATATGCTGTATAACATGTAACTGTTGACTGTAACAATTTGCTTGAGTTAATAAAAGCTAATGTTATGTttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803203 lncRNA upstream 133961 40031934 ~ 40032216 (+) True G706227
TU803196 lncRNA upstream 139685 40026231 ~ 40026492 (+) True G706220
TU803193 lncRNA upstream 143405 40022565 ~ 40022772 (+) True G706217
TU803145 lncRNA upstream 166659 39933708 ~ 39999518 (+) True G706169
TU803425 lncRNA downstream 12890 40336708 ~ 40336919 (+) True G706441
TU803427 lncRNA downstream 19075 40342893 ~ 40343101 (+) True G706443
TU803432 lncRNA downstream 24450 40348268 ~ 40348486 (+) True G706448
TU803436 lncRNA downstream 29447 40353265 ~ 40353500 (+) True G706452
TU803456 lncRNA downstream 102597 40426415 ~ 40426652 (+) True G706471
XM_021612557.2 mRNA upstream 37651 40033932 ~ 40128526 (+) True LOC110529903
XM_021612555.2 mRNA upstream 212668 39800464 ~ 39953509 (+) False usta
XM_036985461.1 mRNA upstream 369958 39645969 ~ 39796219 (+) False LOC110529898
XM_021612561.2 mRNA downstream 97481 40421299 ~ 40424106 (+) True LOC110529908
XM_021612567.2 mRNA downstream 174222 40498040 ~ 40516785 (+) False cd164
XM_021612569.2 mRNA downstream 174222 40498040 ~ 40516785 (+) False cd164
XR_005052875.1 mRNA downstream 174222 40498040 ~ 40516785 (+) False cd164
XM_021612566.2 mRNA downstream 174223 40498041 ~ 40516785 (+) False cd164
TU803252 other upstream 63886 40097906 ~ 40102291 (+) True G706274
TU802817 other upstream 762881 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 1164299 39000496 ~ 39001878 (+) True adgb
TU802209 other upstream 1409872 38755871 ~ 38756305 (+) True G705273
TU801178 other upstream 1936203 38226055 ~ 38229974 (+) True G704281
TU805103 other downstream 762880 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 957020 41280838 ~ 41281481 (+) True LOC110529918
TU805563 other downstream 1056207 41380025 ~ 41384183 (+) True G708448
TU806817 other downstream 2872742 43196560 ~ 43197642 (+) True G709490
TU808451 other downstream 4124766 44448584 ~ 44448973 (+) True G711021

Expression Profile