RNA id: XM_036985471.1


Basic Information

Item Value
RNA id XM_036985471.1
length 5747
RNA type mRNA
GC content 0.47
exon number 18
gene id armc2
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40638271 ~ 40669501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAAAGAGGAGATGGTTGATTCATAGCGGCCGACACATTAATACTGATTTTTTATTTAGCCAGAGGGTGTATTTGTATAATTTATGGATCCCTGCCAAAgcagcacctactcttcctggggtccagcaaaattaaggcagtttaatCAGGAATCAGGGCAGCCTGTTCAGTTGAAAGCCTGCTCATTCTCTTAACAACAACTCAATGGATGGTTATTGTTATAAATCAATTCCTCATTCTGAATACTAACCAGAATGTAATGTCGGTGGGATGTGGAAAATGTAGTTGGCTATTGGTTTAAACAGTTTACATCTGGGTTTAAAGCATTTAAAGCAATGGGAAGGACATATAAAAAAGATAACAATGTGACAAACACAATGTCCATTTTAAAGATAGCTTAAATACAGAGCACCGTTTCATTTAATGACAGATGAGGAAAACTGACATTTCGGCAAAAGTTCTCTAATCTAGAAACCAATTCAACACACAAAATTGGTTATCATCCCTGGTTACAGGTAAAAATGATTATTCAGTGATGTATGACATGATAGCCTATGTGATGGTGTGATGCAACTGACTTGTTAAAATGTCATGCTTTTTTTTGTCAGTTTAGTGAAAAATGCAAATGTTGTACCGAAAAAACGGTGGAGATGTTGAGGGACTCACCTCGACTAATGCTGGACACAAACTGACGTAATACACCCAGGCAAAACCCACTTCAGTGATGAAATCATTCTCATAAAGTAATTCTCCTGACCTCATCCCTGGTCCTGCTGGCAACAACCATCACAAAATGTCTTCTTTGGAGAGGAAGCGTGAGAAACACAGCCCTTTCACCCTGAACCCTGACCCTCGGAGGAAGACCAGCGCAGAGATCGTCACCGAGGCTAGGCACTCTCTGAGGACCCTGCGCACCCAGCGACCTTTTACCCCTCGAGACAACCACAGACAGCTGTTTGGAGAGACCTCTCGAACCCAAGACAGTCGACCTCCCTCTACATTCAGcCTCTACGCTCGGAACTTTGAAGCGCCAGACTCCAGACCGGGTTCTGGAACTCGCCTGTCACCTCTGGAACATAAGCCCAGGTTGCCAGTGGCCCAGGATGAGGACCCAGATCCCGTCAGCCCCATGGCCCTCCCCAAACCCCCCTCTGACCCCCTGGAGCTGAAGAGGGGGGCGGTGGGGGCGAGGGCACGCCTTTTTAGAGCTGGCTCTCTGACAGCACTCCCACCTGTGGCACGGCCAACAGAAgTAAGGGAGAGTGTAAATTCAGTCTCCAGCCCAGAGCAGAGAGAGCTGTCAGCTAAGGGAAGAGGCAGGAGAGCCCTTTATGTTGAGCCTACTGatcgagagaggagagacaaggatAGTGGAGGACCCTCGAAACCTGCCCCACCCAGGACCAACAGTGTAAGTGGACTCAGGTTCCATGGTGGTGTTGACTCATCTATTAGACCAGGCAAAGGAACAGGAGCAGGAGCTGGGGCCGGAACAGAGTTAGGAACAGAGTTAGGCAACGGAGAcagaccagccagccaggaggcTGAGGACGAATCAGTGGTGTGGAATGTTAAGATTTTCCCTCTGTTGCAAGAGCTGGAGTCCATCGTTGCAGGTGGATCCGAGGATGCCGTGGAGCGGCTGTGTGACGCTTGTGACTGTCTCCATGGCGCCCTGGCAGAACAAGGCATGCTGGGCCGGCGTTGCAGGAAGAGAGCGTGGCTTCTTAGGGCGCTGTTCTGCCTCATCGACCTCAATTCCGCCCAACTCAACCTGCAGCTCGCCAAACTCACCCTTGAGCTGAACGTCAGTGGAAAAAACCTGCTGAACATCTGTAAACTCATCTTCAAGATCAGCCGCAGTGAGAGCAACGATATCCTCTTCCAGAACAACTCCATCATAGATTCGCTGCTGTGTGTGCTGCGCtgtgaggatgtgtgtgtgtctggggaggCTGTGTTGTACTGTGTGGGCACTCTGAAGTTCCTCTCAGGGAACTCTGCCCTCCTCAGGCTCCTGTTGGCCAAGGACTGTGTGGGTGTGGCCACCTTGCTCATACAGAAGCTCCACCCACTGTCCCAACCTGACCACACTCAGTTCACCATCGGAGGACACATCCATGTACAGTTGACAGCAACCCTGAGGAACCTGGCTGACCTCCCCGAGTCCCGCCCCCTTTTCGTCTCCCACGGCACCCTGGCAGAACTGTGCCTGGTGCTGCGCCATCACCACGGAGACCAGGACATCTGCACCAACATTGCCAGGGtgttcagtaAACTGTCCTCCTACTCTGAGTGCTGCCTGGTTCTGGCCCAGACCCCGGGCTGCTACACACTATTTATAGAACTGTTGAGCAAACACCAGTGGAAACAGGACCTGGTGGTGCGTCTGCTCTTCACTCTAGGTAACCTAACGTCTCGGAGCAGTGAGGCCAGAAAGCACCTCTTCACGGCTGAGGGATGTATGTCCGTGCTCCTGGGGCTCTACCACACCTACCACGGGAGGTGGGACCCACCGCCCGCACACACACCCCGCACACCTCCAGCCAGGGACACCTGTAACCCCTGCACCCCTTTCTTGGGATGGTGGGAGAACAAGGATGTGCTGGTGAAGCTGGTCAGGGTACTGGCTAATATGTCCATCCACCCTGCAGTGGGACCGACCCTGGCAGCTAACACAGACCTAATACACTACCTGCTGAACACACTGGagctcaGGTCCATGCAGGAAAGTGAGGAGCTTCTGGTGAACGTGGCTGCCACCATCAACAACCTGTCCTTTTACCAGGAAGACAGCTCAGTGGTCAGAGACAGAGGACTCACTGTCGCCAAGTtgttgtTGAAGCTGCTCCTCAGCTCCAGTATTGATGGGATGCTGGAGGCCACGCGTGTGTTTGGCAACCTCACCCAGTCCAGGGAGGTTTGTGACTTCATCATACAAAACAACGtGCACCAGTTTATGGTGACTCTGTTGGACTCTAAGAGCCCAGAGGTATGTTTCTCAGCCTGTGGGGTCCTCACTAACCTGGCCCTGAACCCCCCCAGCAGAACCACCCTCACACAGGAGGGAGCACACACCAAgCTGGCAGACTGTCTGAGGGACTTTGGGCCAGTGGACTGGCAGCTGGCTGGCCTGGTGTGTCAGACCCTGTGGAACCTCACtgaggagggggggatggagacAGGCGCCCCATCCACAATGAACAACCAGGAAAGAGAGGCACTGCTAGAGGTCCTAACACCATACCTAAACGAGGAGGACGCGCTGCAGTGGACCTCTGGTGACGACATGAGGGACTTCCACCGATTATGCTGGGAGTTGGAGTTCCTGCCTGTGGCTAAGAGGCTGAGGGACAGGATCCAGACTCAGACTGACTAACATGACTATCTTCTTACTCTGGTTGTCACGAATGGCGCCctgttacctatatagtgcactgattttgaccagggtccatactctggtctaaagtagtacactatataacgaataaggtgccatttgagatgcaccaTGTCTCACTCCCTAGTGTGACCTCTTTGCAATGTCCTCTTTCTCCTTGTTGTGCCTTGCTATACTGACACCTCTCTAAAGTCACTCTATGCTACTACCACTCTTCAGCTACTACCCCTCTCACTAATTCTATGAATAAGTATTTAGTTATAGGCTATAGGTCTAGATTTTTTCCTGGTTAAGTCACATAATCATGAAAAACTCCAGGCCCATACCTATGACCTACTGAATGTCTACCTGACATATGACAAACTGTTTACACTTTAAATAACAGAAATTATCATTTTTTAGGTTGTCTTATGTATACTGTAAAATGGTTGTGATTTTGTCATAAGCTACTTTTGTTAACATACGAGTAGAATTGTAGTTTGTCTCTGTGGTGATAAAGTAAATGTTTCTCCTTATGGCTGGTTAAGACATTGTTAGGCCTAGATTTaatcagatcaagcgttaaccgGCCATATCCGACACCCACGTAGCTGATGTTTTTGCGGTGTCGGAGGTGAAACTGTGTTGGAGTTGTCAAATCTGTGAGCAGCTGCTCCTGATCAATGTTGCGAAGCCACACCcgttagaagttcagaacaaGAAAGTATAGGCTATATAGAACTAATGACGcataaattgattaaattaaaagAGGATTTATATCCCACATTCCAGTTTTTGAACTTTATATttacaaggctgcatgggatttctcttaaGTCGACTCCGTGTAGCTAATGGCAAAGTCCACTTCAGGTATAATTCCAGGAgacgcttgtggatttgacagctctaacgcagttTCACCTCCGACACTgccaaaacaaccgctatgcTCTCGTGTCtcccatttttttaaatgttgcattaccgcacTTTGAAATTAACAGCTCTCAGTTGAATAAAATAATGAGGATGTCAGCTAAAGTGGATCTGATCGAATAGAGCCCTAAATCTATGAACCgctgtacacaaacaacaaaacagaaaAGTATTGTAAACATGCTCCTCAAAGCCTTTATTGTTACACAAATATGGACCAGGCAGTGCTGCTGCAAAGTGACAGCGTTTTCAAATCACAttaaggaagaaaaaaaacagcacTTCTGTAAAAACAAACCTCAGTTCCCCACTTCCTTGTCCTACTATACAAAATTAAAGCGTTCAGTCACATCACACAAGACAACCCAATAACATTTCATCAGGCATATTCaatgacaaacattgttctccaCATGATAGATGTTTGTCTGGGTTGATAtgaaacagctagctagctggctgatCATGGTGTTAAGAGCATCATTTGTTTAGTCTCATCCTTTTTCAGATTGTCATAGGGAAATGAGTCAGTCAAAAATAGAGACAGTTCAGTAGAGACATACTGCTGGTGATTGAATGGACCAAGTCACCCTCTGTCCTTAATGGGGAAAAAAATCCCAAAGATTTAAGTCTATAGCCAGTCATGCCAGGGAGTTTTTCCAGTGAGGACAGAAATGAGCAGAACAAAGCTCAAAGGGTGATCCTAGAGGGAATGTCCCCTCATCTCATTGCACATTACAGACAAGTTCAAATGTTTTAGCACAACAGTTGTGGGACTCCAACTCTGACTCGACCACACATGGACAAGGAAGGACCATTTGTGGTTCTGTTTGGGTCGTAACATTAACACAAGCAAACCACAGTTCAGTGTAGTGTGAATGGGAGGACCGACTcaacacaggaaacaaacacagCTAGGATTTGGACTCATATACACCTAATTCTTACGCTGTTGTGCGAAACAGTTCATTGTGTGGGAGCCACTATTGCATTAAAGTGTGCAAAATGTATCTAATAGCCAAATGTTTTCCTATATCATTGGAAACTAATTGATGGGAGAGCAGATGCATTATCTGCAAGCTGAACAATGGACATGTGCTGTGACTACAATTTGGTGGGTTTGTTGCATGAATGAGTCCAAATGTACCTGTGTTACGTAATGAGTGAACATTTTGATGCAGCAAAAACAGTTTTAGGGAGAAAACTagaaaataaaattatatttaattTCTAATAAAAAGTGTCTGACAGTCAAGTATGAAACCTCGACTTCCTACCACAACCACCTCCAAATAATGTACCATTCCATAATCATCTTATCAAAACGATCAACTGTCTCAACCCACCCTCAGAAGAATGCAGTACTTTACTTGTTTTCAGTCAACAGAAATAAAAACAGTGGATGGGTCTGCCAtcgtcttt

Function

GO: NA

KEGG:

id description
K24123 ARMC2; armadillo repeat-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU804847 lncRNA downstream 2204 40635454 ~ 40636067 (-) True G707801
TU804549 lncRNA downstream 115750 40522284 ~ 40522521 (-) True G707520
TU804512 lncRNA downstream 121520 40512114 ~ 40516751 (-) True G707485
TU804534 lncRNA downstream 138781 40498050 ~ 40499490 (-) True G707505
TU804524 lncRNA downstream 152891 40485050 ~ 40485380 (-) True G707497
TU804891 lncRNA upstream 27887 40697388 ~ 40697588 (-) True G707843
TU804895 lncRNA upstream 34709 40704210 ~ 40704727 (-) True G707847
TU804897 lncRNA upstream 38541 40708042 ~ 40708401 (-) True G707849
TU804865 lncRNA upstream 46914 40716415 ~ 40717888 (-) False G707817
TU804864 lncRNA upstream 46972 40716473 ~ 40717888 (-) True G707817
XM_036986869.1 mRNA downstream 473295 40132191 ~ 40164976 (-) True LOC110530919
XM_036985463.1 mRNA downstream 493078 40143911 ~ 40145193 (-) False LOC118965516
XM_036985464.1 mRNA downstream 493078 40144232 ~ 40145193 (-) True LOC118965516
XM_036985462.1 mRNA downstream 621104 39959369 ~ 40017167 (-) False slc22a16
XR_002474630.2 mRNA downstream 1584872 39050749 ~ 39053399 (-) True LOC110531091
XM_021612572.2 mRNA upstream 54896 40724397 ~ 40779631 (-) True LOC110529912
XR_005052876.1 mRNA upstream 110350 40779851 ~ 40800037 (-) False LOC118965517
XR_005052877.1 mRNA upstream 110350 40779851 ~ 40800037 (-) False LOC118965517
XR_005052878.1 mRNA upstream 110350 40779851 ~ 40800037 (-) True LOC118965517
XM_021612576.2 mRNA upstream 288641 40958142 ~ 40969474 (-) False LOC110529916
TU804129 other downstream 678658 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 1411958 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 2324468 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 2599925 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 3146114 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 2050270 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 2501259 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 3869292 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 4788276 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 5641629 46311130 ~ 46325681 (-) True crfb16

Expression Profile