RNA id: XR_005052876.1


Basic Information

Item Value
RNA id XR_005052876.1
length 2244
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC118965517
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40779851 ~ 40800037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACATTATTAGGGGCTAAACAGCAGCGCTAACAcagctcctccctctcctttcagATCTGTACAAAAACGGACTTCAGAGGGACACCTTCCTACCTTTCATCGACGCGTTGAAGGTGAAGACTAAGTCATCCCTTCTTCGCTCCTCTGTGTCTTTTTTAAAAATGGGTTTTCTACCTGAGAAGCACACAGTGTCACACACGGTGTCACAAAGCTGTCTTCGGTCATACCTGGTGATGGTGAAAGACTCAaacggacacagagagagcgagggtGAGGGTGGTGCTGTTGGCTGAGGCTTCTCTGGAGGGAGGAAGGACGACCGCAAACGCCAGCTACTCGACATCCTGGTTCTGAGCGGGGTGGACCACGGCCCAACCACAGCAAGATCACAACATGACCACAAACACATTCCTTGATATAAACATCTCTGTTATTGTGTTGTTAACCCCTCTGTTTGTGGCTGTTTGTGTTAAACCCTCTTGGTGGTCATGTTTGTGTCAACCCGATTGTTTTTGGTAATGTTTGTGTCAACCCGATTTGTTTTTGGTAATGGTTTAGCCCACTGTTTGAGGTTTTGGTAATGGTTAACCccactgtttgaggttgtggttcTGTTAATGACTCTGTTCTGTGGTCCTGTTTGTAGGATGTGGGGGACTGCCTGTCTCTGTTCACAGCAGAGGAGGAGATCTTTACGTTTCAGAGGACCATCTCAGTCCAGACTGACCGAGATGCAGACGGAGATGTACTGGACCCAAAGGGACCGATTTCACACAGCACACACAAAATGTGTTGGATGCCTCCGGGTTCATTCAAATGGCAGGCATGGCTTGAACGAGCTGAAGAGAGAAACTGACTGAAATGCTGGGCTGACTTTATACATTTCTACCAGAAGATGGCAGCAAATGATGGCCTACAGAAGCATTCATTCATCCACCCCCTgtgtccctttcctctctctgatGCCCAAAGACATTGTACCAAGTTGGGTCAGAGCCCTTCTCGCAAGCAAGGGGGAGGCCGATGACATAAGAGCATCAGACTAACTCCTTGAATGGCAtactccttgaagtttgcagttgtctaaaaaacactattttgcttaaaatgtatttttcttacCCTTAAGTGGatgtacattactgtatttatacttgggatattgtttttcaacaggaaaggTTCAAATATAGCTGGAGTGTGTCTTTAACCCTCCACTGCAGTAGCTAACTGCAGGCACCAAACTGCTGTATCAGCCATTCCTCTTTATATACATAGCTGGGACAGGAGGAACAAAGAGGAGCATGTTTACATGTGAGCGTGCGTGCATTCGTTCTTGTGTTAATTTtgtatacagaacaaaaatataaacgcaacatgcaacaatttgaaaGATTTTATTGAGTTCATAGAAGGAAGTCAGTCATTTGAAATAGTCAGTATACATGCATGTGTATGTACTTCGTTTGTTATAATTATAAATGAAATAGTGTTGATGTTTTCCATGTAAAATTCAAAGCCATAACACAACCAATGCCTtgcagaatgtgtgtgttttgtctgatTTAGTATATAGGATTGTTATCCATTCCTAATCAATGCCATCCGTTCCAAGAATGAATTGATGAATACCGCGCACAGGTGGAATTCGCGCATTCCTGTACATAAATCGAGAGAGCGTGTCCCCCCTGCAAGGTGGACGCGCACTTTACACAACATCTTCTCTGGAACAAAGACGTATGGAGGCTGACTGATGCTGGTGTTTTGGTACGGTTTTGGTACGGTcttggaggtgggaggggaggggaggggcaaCCACTCCGAAGTATCACATACAGGACAGATAACCATAGCATTTATTCCCTTATCTCTTCATTATGAATGACGTCATGTGTTTGAAGAGGTCGATCTGGTTTGAAGGGGGCGTGTTCTGCGCGTGCTGTCCACATTGATTGACACCCATGCTCACGGATTAAAGGTTTAAAGATACTGTCATTAAAAGAAAAATGACTTAACTTGACTTAAAGACTTCACTATTTCATTATAATATTTGGTAGAATGCATGTCATTTAAGTTATGAATAAAGTATAGGCTAATATCCAACACAAGGAAAACAAACACCTACTTGCATATACCTAAATTGTTAcatatgtgtaggcctatgtcaGTTGTTACATTCTAACAGTGCACCACAGCGGAAGTGGAAATAATGCTACATATGTCAACCATACCTTTAACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU804865 lncRNA downstream 61963 40716415 ~ 40717888 (-) False G707817
TU804864 lncRNA downstream 61963 40716473 ~ 40717888 (-) True G707817
TU804897 lncRNA downstream 71450 40708042 ~ 40708401 (-) True G707849
TU804895 lncRNA downstream 75124 40704210 ~ 40704727 (-) True G707847
TU804891 lncRNA downstream 82263 40697388 ~ 40697588 (-) True G707843
TU804932 lncRNA upstream 12751 40812788 ~ 40819330 (-) True G707884
TU804953 lncRNA upstream 31930 40831967 ~ 40832338 (-) True G707905
TU804955 lncRNA upstream 35862 40835899 ~ 40836131 (-) True G707907
TU804965 lncRNA upstream 44255 40844292 ~ 40844519 (-) True G707917
TU805236 lncRNA upstream 75179 40875216 ~ 40910989 (-) True G708154
XM_021612572.2 mRNA downstream 220 40724397 ~ 40779631 (-) True LOC110529912
XM_036985471.1 mRNA downstream 110350 40638271 ~ 40669501 (-) True armc2
XM_021612562.2 mRNA downstream 111052 40638271 ~ 40668799 (-) False armc2
XM_036985472.1 mRNA downstream 111052 40638271 ~ 40668799 (-) False armc2
XM_036985463.1 mRNA downstream 634658 40143911 ~ 40145193 (-) False LOC118965516
XM_021612576.2 mRNA upstream 158105 40958142 ~ 40969474 (-) False LOC110529916
XM_036985475.1 mRNA upstream 158105 40958142 ~ 40969478 (-) True LOC110529916
XR_005053021.1 mRNA upstream 925484 41725521 ~ 41728987 (-) False LOC118965611
XM_036985477.1 mRNA upstream 1540645 42340682 ~ 42420086 (-) False klhl18
XM_036985478.1 mRNA upstream 1540645 42340682 ~ 42420087 (-) False klhl18
TU804129 other downstream 820238 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 1553538 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 2466048 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 2741505 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 3287694 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 1919734 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 2370723 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 3738756 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 4657740 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 5511093 46311130 ~ 46325681 (-) True crfb16

Expression Profile