RNA id: XM_021612574.2


Basic Information

Item Value
RNA id XM_021612574.2
length 1614
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110529915
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 40912943 ~ 40955393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGCGAGTTATTAAGCCAATAAAAAGTTTTTACATGTAAAATGTGTTCCGTAAAGTGTATTTTGGTATACGTATGTCGCGATTTTGTTTAGTTTGTTGGGAATCAAATGCAATACTTTACACAGCGCATTTAACTCTGATTGGTCAATATTTCAGATGTGCACTTATCAGCCAAGAAAATGCAAATACGCTAAGACAGAGGTAGTAAACAAAACACAAGGATGGTGCCAAGCGTCAGCTGCACCTCAGCTGATCGGAAGTGGAGCGCGCAACCACAAACCATTGAGGCTAATTTAGCTAGCGAGTGAGGGAGAAATGGCTGATACCATAGCTGATACAAGGAGGCTATTCTCCAAGCCTCAGAACTTGAATGACGCGTATGGACCACCTAGTAACTTTCTAGAGATAGACATGAGCAACCCGGAGACGGTCGGTGTCGGCAGGACCAGGTTTACCACGTATGAAATCAGACTAAAGACCAACTTGCCCATCTTCAAGTTGAAGGAGTCTCGAGTGCGGAGACGGTATAGCGACTTTCAGTGGCTCAGaggggagctagagagagacagcaagGTGGTGGTACCCCCTCTCCCAGGGAAGGCTCTTTCCAGACAGCTGCCGTTCCGAGGGGACGATGGGATATTTGACGATTCTTTCATCGAGGAGCGGAGAGCTGGGCTGGAGCAGTTCCTCAACAAGTTTCCAGAATCCTTTCCTCTTCATCAAATTCTCTGCCTCCTGCTTCAGATGTAACATGGGGACTTTATGAATTTAAAGACAGagtgGCTGGTCACCCCTTGGCCCAGAACAAGCGCTGTCTGCACATGTTTCTACAGGACGAGTCTGTGGACAAGACCTATACCCCCTCCAAAATACGACAAGCCTAAGAGAAGCGGGCCACCACGCGGCCCAGCCCCGGTCTATACTCGGCCAGGCCCCGCTCCACAACCCAAAGCTCTCTGTTCTGCTAACGGTCCTGCTCTGCTCCGACCACAAACACTTGTATAATCTTCATTCTTCTTTTGTTTGCAATCACTTTCTTTCTTTGTCTTTTATCTCCGTGTTGATTAGTGATCTCATGTAGTGCTCGTTTTCAACTCTCGATTGGATCAAACTAGGAAATGGTCTACATGTAAAAACTGTTTGAAAATAATATATCATTGTTTTTGTTGTCTCAATGCCACTACCTTGAGTATTTTACAGTATGTTATCTATATTTATCAGTCTTGGATATTCATTTTTAAAGAAATATAAAAAATACCTTTCCATGTATGCAAACCTCATGTTAAAACCCCATACATTACACAGTGTTGTTTTTACTCAATGTCCAATTGGAATGATTGTCCTTGGCACACTTTGTCCCTGACTCTGAAAATCACCCTTTGTGGACGATCCATCACTACCATGAACtgaagcgtgtgtgtgtctgtgtactacCAGCCAGCACTTCCACTGTTCGTTAGCctgtaaattattttataatgAGAAAAAATGCACCAGAGAGGGGAACCCCACAGCATTTCTACCAACTGACCATGTGTTTATGAAATGTGTATACTGCTGTGCCATTTTGTTATTTTGAAAATTTTCCAATAAAATAGGTCAAACGCACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU804970 lncRNA upstream 1958 40875215 ~ 40910989 (+) True G707922
TU804969 lncRNA upstream 63847 40848484 ~ 40849100 (+) True G707921
TU804968 lncRNA upstream 64939 40847474 ~ 40848008 (+) True G707920
TU804967 lncRNA upstream 67272 40845444 ~ 40845675 (+) True G707919
TU804947 lncRNA upstream 83312 40829372 ~ 40829635 (+) True G707899
TU805020 lncRNA downstream 3684 40959077 ~ 40959283 (+) True G707966
TU805022 lncRNA downstream 4502 40959895 ~ 40960132 (+) True G707968
TU805205 lncRNA downstream 296575 41251968 ~ 41252195 (+) True G708130
TU805212 lncRNA downstream 302788 41258181 ~ 41258463 (+) True G708137
TU805216 lncRNA downstream 317111 41272504 ~ 41272737 (+) True G708141
XM_021612564.2 mRNA upstream 273427 40633228 ~ 40639520 (+) False LOC110529910
XM_021612565.2 mRNA upstream 273427 40633235 ~ 40639520 (+) True LOC110529910
XR_005052875.1 mRNA upstream 396162 40498040 ~ 40516785 (+) False cd164
XM_021612578.2 mRNA downstream 96770 41052163 ~ 41056862 (+) False LOC110529917
XM_021612579.2 mRNA downstream 97123 41052516 ~ 41056862 (+) True LOC110529917
XM_021612580.2 mRNA downstream 205550 41160943 ~ 41283719 (+) False LOC110529918
XR_005053022.1 mRNA downstream 1010522 41965915 ~ 41972820 (+) True LOC118965612
XM_021612586.2 mRNA downstream 1579868 42535261 ~ 42549691 (+) False tmub1
TU803204 other upstream 589174 40321573 ~ 40323773 (+) True LOC110530920
TU803205 other upstream 591655 40166208 ~ 40321292 (+) False LOC110530920
TU803252 other upstream 810656 40097906 ~ 40102291 (+) True G706274
TU802817 other upstream 1509651 39402948 ~ 39403296 (+) True G705853
TU802471 other upstream 1911069 39000496 ~ 39001878 (+) True adgb
TU805103 other downstream 131305 41086698 ~ 41167970 (+) True G708034
TU805139 other downstream 325445 41280838 ~ 41281481 (+) True LOC110529918
TU805563 other downstream 424632 41380025 ~ 41384183 (+) True G708448
TU806817 other downstream 2241167 43196560 ~ 43197642 (+) True G709490
TU808451 other downstream 3493191 44448584 ~ 44448973 (+) True G711021

Expression Profile