Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021612583.2 |
| length | 2194 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 12 |
| gene id | puf60a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 42431791 ~ 42526586 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| K12838 | PUF60; poly(U)-binding-splicing factor PUF60 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU806377 | lncRNA | downstream | 1615 | 42429418 ~ 42430176 (-) | True | G709096 |
| TU806114 | lncRNA | downstream | 105161 | 42326342 ~ 42326630 (-) | True | G708852 |
| TU806088 | lncRNA | downstream | 121146 | 42254573 ~ 42310645 (-) | True | G708827 |
| TU806496 | lncRNA | upstream | 53689 | 42580275 ~ 42627363 (-) | True | G709197 |
| TU806565 | lncRNA | upstream | 184957 | 42711543 ~ 42711868 (-) | True | G709263 |
| TU806593 | lncRNA | upstream | 204312 | 42730898 ~ 42741496 (-) | True | G709282 |
| TU806644 | lncRNA | upstream | 529032 | 43055618 ~ 43060881 (-) | True | G709322 |
| TU806653 | lncRNA | upstream | 543849 | 43070435 ~ 43070702 (-) | True | G709329 |
| XM_036985478.1 | mRNA | downstream | 11704 | 42340682 ~ 42420087 (-) | False | klhl18 |
| XM_036985479.1 | mRNA | downstream | 11704 | 42340682 ~ 42420087 (-) | True | klhl18 |
| XM_036985477.1 | mRNA | downstream | 11705 | 42340682 ~ 42420086 (-) | False | klhl18 |
| XR_005053021.1 | mRNA | downstream | 702804 | 41725521 ~ 41728987 (-) | False | LOC118965611 |
| XM_036985475.1 | mRNA | downstream | 1462313 | 40958142 ~ 40969478 (-) | True | LOC110529916 |
| XM_021612591.2 | mRNA | upstream | 1073168 | 43599754 ~ 43602305 (-) | False | mycb |
| XM_021612593.2 | mRNA | upstream | 1073168 | 43599754 ~ 43602305 (-) | True | mycb |
| XR_005053023.1 | mRNA | upstream | 1232743 | 43759329 ~ 43763318 (-) | True | LOC118965613 |
| XM_021612600.2 | mRNA | upstream | 1658407 | 44184993 ~ 44436559 (-) | False | efr3a |
| XM_021612601.2 | mRNA | upstream | 1658407 | 44184993 ~ 44436559 (-) | False | efr3a |
| TU804129 | other | downstream | 2472178 | 39956961 ~ 39959613 (-) | True | slc22a16 |
| TU803684 | other | downstream | 3205478 | 39219644 ~ 39226313 (-) | True | G706683 |
| TU801790 | other | downstream | 4117988 | 38313489 ~ 38313803 (-) | True | G704874 |
| TU801610 | other | downstream | 4393445 | 38037725 ~ 38038346 (-) | True | G704702 |
| TU800488 | other | downstream | 4939634 | 37489227 ~ 37492157 (-) | True | LOC110530908 |
| TU806574 | other | upstream | 193185 | 42719771 ~ 42720699 (-) | True | G709272 |
| TU806781 | other | upstream | 644174 | 43170760 ~ 43171082 (-) | True | G709454 |
| TU808567 | other | upstream | 2012207 | 44538793 ~ 44539504 (-) | True | G711133 |
| TU810338 | other | upstream | 2931191 | 45457777 ~ 45458248 (-) | True | G712814 |
| TU811283 | other | upstream | 3784544 | 46311130 ~ 46325681 (-) | True | crfb16 |
