RNA id: XM_021612591.2


Basic Information

Item Value
RNA id XM_021612591.2
length 1655
RNA type mRNA
GC content 0.47
exon number 3
gene id mycb
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 43599754 ~ 43602305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGGGAGCAGCTGTTGTTAATCTTGCAGTCAGTAGGGTGGTGATAGACACACGCAGCACTGGGCTCAAAGGACTTTACAACAACGGTGTTGACTTCGGCTCTTTTATTTCGCCTGCTTTCTCAACGAACAAGTATTTTGTTTGTGCTGTCACTGCTACGGCAGTCACAATGCCGCTGAATTCAAACATGGCCAGTAAAAACTATGACTACGACTATGACTCGGTCCAGCCCTACTTTTACTTCGACATTGAGGAGGATAATTTCTATCACCGGCAACACAGCCAACTCCAACCCCCTGCTCCAAGCGAGGATATATGGAAGAAATTCGAACTGCTGCCGACACCACCGCTTTCTCCCAGCCGGCGACCCTCTCTATCAAGCCTCTTCCCTTCGACTGCAGACCAGCTGGAGATGGTCACGGAATTTCTCGGGGATGACGTGGTGAACCATAGTTTCATTTGTGACGCGGACTACTCCCAGTCTTTTCTCAAATCTATCATTATCCGGGACTGTATGTGGAGCAGTTTTTCGGCTGCTGCTAAACTGGAGAAAGTAGTGTCCGAGAGACTAGCAACGCTGCAAGCGAGAAGGGACTCTAGCGTGGCCGGGGAAGCTAGCGCAGTAACCAGCACGAATCTAAACTTGAATTACCTGCAAGACCTGAATAACTCCGCATCGGAATGCATTGACCCTTCTGTGGTGTTCCCTTACCCGGTTGCCGAGAACCCTAAACACACAAAAACGACTACAGCGTGTGCCATGGCATTGCCTTTGGATACCCCACCGAACAGTGGTAGCAGCAGCGATAGCGATTCAGaggaagaggaggaagaagagattgACGTGGTGACAGTGGAAAAGAGAAAGTCTGTAAGGAGGTCAGACTTGCACATGTCTAGTAGCACACACCTCTGCCCCCTTGTCCTGAAAAGGTGTCACGTCAACATCCACCAACACAACTACGCCGCTCACCCGTCGACAAGGAGCGAGCAGCCCATCAAGAGGATTAAGTTTGAGAGCAGTGGGAGAGTACTCAAGCAAATCAGCAACAACCGCAAGTGCTCGAGTCCCAGAACGTCAGACTCTGAGGATAATGACAAACGGAGGACTCACAATGTGCTGGAGAGGCAAAGGCGAAACGAGCTCAAGTTGAGCTTTTTCGCATTACGGGATGAGATCCCGGACGTGGCGAACAATGAGAAGGCAGCCAAAGTTGTCATACTCAAAAAGGCGACAGAGTGCATTTTCAGTATGCAAACGGACGAGCAGAAACTGTTATTGTTGAAAGAGCAGTTGAGGAAAAAGAGTGAACAGTTGAAAAGCAGACTAGAGCAGCTGAGGAACTCTCAGCAAGTTTAATTTATGAAAGGATGCCATCTTTTTATGCCTAAAGTAACTTGTAGAGTGGTGGTGCATGCAAATGCAAAAATGACTTATCACAGGTATCGGCCAGACACCTGGGCAGGAATCAGAATTATTTTCTTTCACTGCCTCACTTGAACTTTATAGGGGTTATCAATTTCTTATTTAAGTGTTTCATTTTTATTGATAAGAGGTTCTGCACAGTTGTCTACCTTAACTTAATGCTTTTGTATGTTTTGTACATAATTCTCAAATGTATTGATctcacaaatacatttttataaatcATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU807896 lncRNA downstream 9870 43589655 ~ 43589884 (-) True G710490
TU807894 lncRNA downstream 11492 43587684 ~ 43588262 (-) True G710488
TU807209 lncRNA downstream 78957 43520425 ~ 43520797 (-) True G709835
TU807033 lncRNA downstream 218578 43380559 ~ 43381176 (-) True G709667
TU807029 lncRNA downstream 222090 43374947 ~ 43377664 (-) True G709663
TU808198 lncRNA upstream 441341 44043646 ~ 44043959 (-) True G710781
TU808202 lncRNA upstream 450725 44053030 ~ 44056352 (-) True G710785
TU808219 lncRNA upstream 465634 44067939 ~ 44068194 (-) True G710800
TU808214 lncRNA upstream 466558 44068863 ~ 44069201 (-) True G710795
TU808212 lncRNA upstream 468388 44070693 ~ 44071246 (-) True G710793
XM_021612583.2 mRNA downstream 1073168 42431791 ~ 42526586 (-) True puf60a
XM_021612585.2 mRNA downstream 1073227 42431791 ~ 42526527 (-) False puf60a
XM_021612584.2 mRNA downstream 1074085 42431791 ~ 42525669 (-) False puf60a
XM_036985478.1 mRNA downstream 1179667 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA downstream 1179667 42340682 ~ 42420087 (-) True klhl18
XR_005053023.1 mRNA upstream 157024 43759329 ~ 43763318 (-) True LOC118965613
XM_021612600.2 mRNA upstream 582688 44184993 ~ 44436559 (-) False efr3a
XM_021612601.2 mRNA upstream 582688 44184993 ~ 44436559 (-) False efr3a
XM_021612602.2 mRNA upstream 582688 44184993 ~ 44436559 (-) True efr3a
XR_002474453.2 mRNA upstream 788573 44390878 ~ 44394639 (-) True LOC110529930
TU806781 other downstream 428672 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 879055 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 3640141 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 4373441 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 5285951 38313489 ~ 38313803 (-) True G704874
TU808567 other upstream 936488 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 1855472 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 2708825 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 3449162 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 3576119 47178424 ~ 47178736 (-) True G714425

Expression Profile