RNA id: XM_021612606.2


Basic Information

Item Value
RNA id XM_021612606.2
length 2338
RNA type mRNA
GC content 0.48
exon number 2
gene id basp1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45122083 ~ 45173741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCGCCAGAATGGAGTGAaccgtgtgcgtgcgtgtgcgtgtacgcGTGCGTGGCGCCAGAGAAATCCAGAGTGAGCCACGCAGAACACTACCATAATAGGCACAAGCTACCACGCGCACAGGCGAAGCCGCTTGATAAACTACACTTACTGAAAGGAGGGCTTTGTAACTTCACTGTCAACGAGACTAAAATGGGAGGCAAGCTCAGCAAAAAGAAGAAGGGATACAATGTAAACGATGAGAAGGCCAAGGACAAGGATGCCAAACCAGAGGGCGCAACAGCCGAGGAGAGCGAACCTCAGAACGACAAAAAGGACGAGGCCCCTGCTCCCGCCGAGACCACCGAGATAGCTAACGACACAAAGGATGTGCCCGCAGCCGATACCACGACGACCAAGGAGGAAGGAAAGGGCGCCTCCCCTCCCGCCAAGGAGCCGGAAAAACCTGCAGCAGAGCCCAAAGCGGAGGTGTCTAAGGCTGCGGAAGTCACCGACCCTGCCCCCATAGCCAAGGAGAAACCAGCCGCCCCTGCGAAAGAGCCAGCCCCCTCCACTAAGGAAGCCGCCCAAGCTCCAGAAGTCAAGGCCCAGGCGCCTGCACCACCCGCAGCCCAGGCTGAAAGCAAAGACGAGGCCGACGCTAAAAAGACTGAGGCCCCCGCAGTACCAGCGGCTAAAGCCGAGGCGGCCCCTGTTGCCGCTGCCCCCCAGGCCAAGCCCACAGAAGCAGCAGCGGCGGTCCCGGCCAAGGAGGCCCCGGCTGCTCGTTCAACAGCAGCACCACTGGCTGCCACTGAGCCCGCTGCACTGGTCAAGGCCAATGCCACAGAGGCCCCAGTTCCAAGCAAGGATCAAACCGTGGAAGTTCAAGATTAATGGACACCTCTTTTAAGAAAATACACTACattaaacaacaaaaatgaagTAAAATAgagaaaaaatgtaataaaatagcCCACCCATATtaatattaaaataataataataataatgatttgtTGGAGGAGGATTGTGACAACAACCTTGAGAAGgatgatgctgctgctgccgATGATTATTATTGTTATGGTTATTCTATTTTTTTTCTGCTGTAGTATTTGAACTTTAATAAAAGTCTGTCAGCCATATGCCCCTCCATTCCACAGCATCCTTCCTCCATCCATTTCTGGGATTCAGCATTCTCCgccttcatctctctgtcttctcagaGACCTCTGTAGTCTGGGACCATACACGTACATTTCCCCTAGACAGTGTGCTGCCGATGTCTGAAAATGAGGGGGGGAAAAGGGGGTTGAATCTATTTACCAGCTGGACATGCACTCTGTCTGTCCCATCCTCGACTTCCCCAAACTCAAACCATCCCCCATTCCCCAAACTCGCTCCTCTCCAGAGTGCCGTGTTCTCTGCTACCGTACCTGGCACGTCTGTTTTTAGCGCCAAGTGAGTTCCCTTTGCTGTTCCCATAGTCGGCaacttattttgtatttttgggtTGTTCGTGCTGTATATGGTCACTCAGTTTCTTGCCGCCTGTTTCCCAACAGGTTCATGCCACCTCGTGCAGACACTGTCAGAGTTGAGAGGAGGTACTTTGGAAATTCTGAGACTTTCCTAGAGGTACAATATGTCGATGCATTCTTAGGGATATGAAAATGccctaaagttttttttttttgtgtgtttatttttttttacaacattcTTATACCTTAGTTTTTCTAAGAAAAACATTAGTTGTAGATGATCAGGCCAGTTTGAAGCATTTCTTAAATGTTTCTAGAAATCCTGAAAAGCTTTGTAGATTGTTCTCGACGTTCCAGCTCTTAATTCCCAGACATTGGCAATTCTCAGTTCCTTTGGGTCACTCTGACTGCAGCatagactccccccccccccccccactgtgtctTATTTCAATTGAAAATAAGACATCTACTGTGTTTCAATCAATGTAACTCAATGGCTCTCAGCCTATATCACAAAGGTGCAATACATTTACACCCTAAAAAGGGATTGTGCCCAGCTGACAACAGTAGTAGTGTTGTCTGGGGATGAGGGTTCTAAATTAATGATACTACATGAGGCATCTACAGCCTACTCAAGCTGCCATGGTCCCTGTAACCATGGCTACCATGTGACATGTTCGAGTAGTAAGATGGAAGAAACCTGCACAAGGAAGGGAGCCTCTAATCTTGTCATCTCCACCACCATGCATTTTTACTCTTTCTGCTCATATGTTACATATATGAAAATATATGTaggtgtacagtaccagtcaaaggtttgaacacacctactcattaaagttttttaaattttttttttactattttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU809935 lncRNA downstream 142675 44978973 ~ 44979408 (-) True G712421
TU809713 lncRNA downstream 528088 44589551 ~ 44593995 (-) True G712213
TU809711 lncRNA downstream 528689 44588373 ~ 44593394 (-) False G712212
TU809712 lncRNA downstream 528689 44588373 ~ 44593394 (-) True G712212
TU809709 lncRNA downstream 532307 44585333 ~ 44589776 (-) True G712210
TU810142 lncRNA upstream 50478 45224219 ~ 45224544 (-) True G712622
TU810311 lncRNA upstream 247430 45421171 ~ 45421678 (-) True G712787
TU810312 lncRNA upstream 248208 45421949 ~ 45422344 (-) True G712788
TU810313 lncRNA upstream 250639 45424380 ~ 45424611 (-) True G712789
TU810318 lncRNA upstream 257032 45430773 ~ 45430996 (-) True G712794
XR_002474328.2 mRNA downstream 137815 44980969 ~ 44984268 (-) True LOC110529115
XM_021612600.2 mRNA downstream 685524 44184993 ~ 44436559 (-) False efr3a
XM_021612601.2 mRNA downstream 685524 44184993 ~ 44436559 (-) False efr3a
XM_021612602.2 mRNA downstream 685524 44184993 ~ 44436559 (-) True efr3a
XR_002474453.2 mRNA downstream 727444 44390878 ~ 44394639 (-) True LOC110529930
XM_021612608.2 mRNA upstream 311277 45485018 ~ 45495100 (-) False znf622
XM_021612609.2 mRNA upstream 311277 45485018 ~ 45495101 (-) False znf622
XM_036985484.1 mRNA upstream 311277 45485018 ~ 45495101 (-) True znf622
XM_021612611.2 mRNA upstream 335340 45509081 ~ 45546117 (-) False retreg1
XM_021612610.2 mRNA upstream 335340 45509081 ~ 45601564 (-) True retreg1
TU808567 other downstream 582579 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 1951001 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 2401384 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 5162470 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 5895770 39219644 ~ 39226313 (-) True G706683
TU810338 other upstream 284036 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 1137389 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 1877726 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 2004683 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 3115201 48288942 ~ 48289581 (-) True G715865

Expression Profile