RNA id: XM_021612608.2


Basic Information

Item Value
RNA id XM_021612608.2
length 2930
RNA type mRNA
GC content 0.46
exon number 8
gene id znf622
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45485018 ~ 45495101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttattttgaaaatgtcCGAAATTCCATGACCTGGAAATACTTTTGAAGTGTCGCTGAAACCCACGTGTGGAGGAAGACAAGTTTGCAGTCGTTTGCATAAACACGTAGTTCGCTTCCAAATTTTCTTCAAGGAGGGCTTTGAATTGGTTGACTTTAGAATGAATATTCCCATTAACTACGACGACGAACCTGCCCCCACAAAAGTTCATGCCACAACCATGTCCTCGTATACCTGCATCAGCTGTCGTGTGGCCTTCGCAGATGGTGAGGTCCAGCGTGCCCACTACAAAACCGACTGGCACCGTTACAACCTGAAACGCAAAGTTGCCGACATGCCCCCTGTGACTGCAGAGAATTTCCAGGAGCGTGTGCTGGCGCAACGGGCCGCCACCGAACAACAGGTGACTGGCGCCACTGTCAGCGAGGGCTGCACCACGTGCAACAAGAAGTTTTCCAGCTCCAATGCCTACCAGAACCACCTGCAGTCCCACAAGCACCAGCAGGCAGAGAAGCAGGCCTTGCTGGCAGCCCAGAAGAAAGTGGAGATGATGAATGAGAAAAAcctggagaagggccttggggaCGACGGCAAGGTGGACCACAATGCCAAGAACGAAGCGCTACAGCAGGCCCTAAAGCCGCCGCAACGGCCCAATCCGGAAAAGGCCCAGGCTTCAGGAGTGGAGAGGCCAGCAGCGGATAAGGCCAAGCCGGAGAAACCGCCCAGGCTGCAATGGTTTGAGGGGCAAGcaaagaagatggagggagaggaattGGCCACAGCTGAGGAAGAAGAGTGGGAGGATGTGGATGGCGACAATGACATGGATGATGATGACTTCGAGGAAGATGCTGACGAAACCATGGAGCACGAGGAAGGGGATGGTGCTGCTTCGGCTTCCCCCCACCACGCCGTTCTACCAGGGGCCATCCCCCCCACGGACTGTTTGTTCTGCCCCCACCACTCTCACTCACTCCTCAAAAACCTGGCTCACATGACAAAAGTGCACAGCTTCTTCCTGCCCGACCTGGAATTTCTAATCAACCTCAAGGGACTAATTTGCTACCTGGGAGAGAAAGTGGGCGCTGGTAAGGTGTGTCTGTGGTGTAACGAGAAAGGTCGCTCCTTTTACTCCACTGAGGCAGTACAGGGCCACATGACTGACAAAAGCCACTGCAAGCTCTTCACCGACGGAGATGCATCGCTGGAGTTTGCCGACTTCTACGACTTCAGGACAAGTTATCCTGACCAGAAAGAGGGAGATGATGTTGAGATGGAGGATGAAGAGTTGCCGGACGGGAAGAACATAGACTACGATGATGATACGCTGGAGCTCACCCTTCCCTCAGGTGCTAAGATTGGCCACCGCTCTCTGATGCGATACTACAAGCAGCGTTTCGGCGCACCCAGGACTGTGGCGTTGGCCCACAACAGGAACGCAGTGGGTCGGGTACTCAGGCAGTACAAGGCCCTGGGCTGGGGTGGAGACATGGGTAAAAACTCTTTCCATCAGAACCAGAAGGACATGAAGTTTGTCCAGAAGATGAAGTCAAGGTGGATGCTGAAGATAGGCATGGGCAACAACTCTAACAAACAGACCCACTTCAGGCTCCAAGTCATGTTCTAGTCCCTTGACAGAAAATACAGCGTTAGATCCCCATATACCTGACTCTCATATCATTGGACAGTCCCTAAACCTTTTACGGCTAATGTCTTGCATCGTTCAAAGATGTCTATTGTAAACATTCAGCACTCGTTATATCTGCTGCATATTGCAAAGGACTtcaccatgacataattttcagagCCGTTAATATTTACTGGATATGTCATATTCTATTCATGATCCGAGGTCCTATACAAAATACTGAGTTACTGTTTTGTATTTTGACAAATGGCTGTATATTTCACATCATGAAATTCTGACTTGGATAATTTGTCTTAATTCATGCTGTCATTCCAGCAAGTAATTGTTTATAAAATACAATTGAGGTTGAGTAATAAACATTAAGGAATCGTTATGTTTCACATTTGACAAATTTAACTGATTCCATTGGTAAATATGACAATTTTATGCCCATTTGGTTATTGAGTTTATGGGTATTTATTTGTGCAAAGCACAAATAGAGGGATCAGTCACTTTGGACAGGTTTTTGCCAGCAAAATTAATCAAACATATTGTTGCAAATTCAGGAGGAAGCCATGACCGTGATTATAACCCAGGTCCAGTGACTGTCAAGCCAACCCCTTAACTGTTACGACAGGAGGTCTCAAACTCTTAACACCTAGCTACCTTGTTAAGGTCGCTACAACGTTTTTAGAAGTCAAAGGTATATTTCCCCAAAATTTGAAAATATAATTTGCTTCCTGAACTTGCAGTCTAAGGACAATGAGAAACTGCAATCCACACTGGTTGTGTTTAATACACAGAGCAAAAATAGAAAAGCAATGTACAGTGTTggtgctgaaataaaagatcccagaaatgttccatatacaaaaaaaatgtatttctcaaatgttgtgcacaaatttgtttatatccctgttggTGATGAGTTGTTGCCGCCTcaagtcattttagagaatttggcagtacatccacgGAGAcgtgctgatgtcaatgttgtgaacagagtgccccatgttgGCGGTCAGATTttggtatgagcaggcataagctacagacagcGAACACAGTTATATTTTAGCATTGGCAATTTCAATGTAAAGATACCGTGACACGATCCtgtgccatcacctcatgtttcagcataatgcaTGGCacaaaggatctgtacacaattggaagctgaaaatgtaactcagtgaaatctttTGAAATAGTTTCCTGTTAagttttatatttgtgttcagtgtataatGTTATTCCAATGCCCTAGAAAATAAAGGCTAATTTCCTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU810340 lncRNA downstream 22397 45459133 ~ 45462621 (-) False G712815
TU810339 lncRNA downstream 24035 45460080 ~ 45460983 (-) True G712815
TU810336 lncRNA downstream 28491 45455909 ~ 45456527 (-) True G712812
TU810334 lncRNA downstream 31702 45453032 ~ 45453316 (-) True G712810
TU810333 lncRNA downstream 32584 45452208 ~ 45452434 (-) True G712809
TU810482 lncRNA upstream 162076 45657176 ~ 45711563 (-) False G712949
TU810481 lncRNA upstream 212802 45707902 ~ 45711563 (-) True G712949
TU810501 lncRNA upstream 216995 45712095 ~ 45712403 (-) True G712967
TU810502 lncRNA upstream 217516 45712616 ~ 45712839 (-) True G712968
TU810503 lncRNA upstream 218446 45713546 ~ 45713820 (-) True G712969
XM_021612606.2 mRNA downstream 311277 45122083 ~ 45173741 (-) True basp1
XR_002474328.2 mRNA downstream 500750 44980969 ~ 44984268 (-) True LOC110529115
XM_021612600.2 mRNA downstream 1048459 44184993 ~ 44436559 (-) False efr3a
XM_021612611.2 mRNA upstream 13981 45509081 ~ 45546117 (-) False retreg1
XM_021612610.2 mRNA upstream 13981 45509081 ~ 45601564 (-) True retreg1
XM_021612616.2 mRNA upstream 183759 45678859 ~ 45684992 (-) True nol7
XM_021612624.2 mRNA upstream 298148 45793248 ~ 45924729 (-) False amph
XM_021612626.2 mRNA upstream 298148 45793248 ~ 45924729 (-) False amph
TU810338 other downstream 26770 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 945514 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 2313936 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 2764319 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 5525405 39956961 ~ 39959613 (-) True slc22a16
TU811283 other upstream 816030 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 1556367 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 1683324 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 2793842 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 3047191 48542291 ~ 48616523 (-) True dlg1l

Expression Profile

XM_021612608.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 50.
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XM_021612608.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021612608.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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