RNA id: XM_021612610.2


Basic Information

Item Value
RNA id XM_021612610.2
length 4992
RNA type mRNA
GC content 0.44
exon number 9
gene id retreg1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45509081 ~ 45601564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACATCACTTTATTTTTGGTAGCActatgctgttgttgttgttgtcagctAACCAGCATAAACTATATGGGAAGGGTTTATCAGAACGACTTGACTGAACCGAATACATTAGTCTCCACACTTGACTCAGATGCGCGACATACGTCATCCATTTGGGCACCAGGCGAGTCCATATAGCCTCTCCCACGTCAGAATCGACACGAGGATGCTGCGGTAGTGGCGGGGCCGGAGGTTGCAGCCGTGAGTCTGGCCAGGGCTAGACACTCAGGTGGGGCGATGGCGGCGGCTGGGCACGAGGAAGAGCAGGCTGTTATAGCGGACTGTCGCATTTCAAACGTGATCAACTGGAATAAACCTTTTAGGACCACGACACTCTTTGCTGCCACCACTGCTGTGTACTGGTTTGTGGCCCTCAATTCCTATAGAGCGTACTGTCTTCTTGCCCTTTCCTTGGCTCTGATGGGGACAGTGCTGCTTGTTAAAGATGTGGCTCTCTCCAGATGTGTCTCTTTCTCTAAAGGGGCCCACTTATGGAGCAGTATGACTGTAAGCTGGGAGATCATTGATGCGGGCCAGGACAGCAGATCTGGAGCTGGGCTACAGGTCACAGACTCCTGGACGAGCTTCAAGCTCTTTCTGCAGGAGACCTCCTCCTTCAAGCAGCAGAATCCAGGCAAGTTTTGCTTGCTGGTCTGCAGTTTGTGCACCTTTTTGGCTGTCTTAGGACGCTACATTCCAGGTGTTCTCATCTTATATGTTTTAGTGCTGGGCGTCTTCCTGTGGCCACTGATGACAGCGCATGACTTTGGGTTGTGGATGAAGCCAGTTCTGCAGAAGCTGGACTTCGGACTGGAAAGATTCCTTCAGAAAATCAGAGAGAATCATGaAAAGAGACTCCTTCTGGCACAAGCTGACCGGGAGAGTATTGAAGCCGATCTGTCCTCCCTTTTCCCCAAGTTGGACTCCACAGTTTGTAAGGAGATGTCGATATCAGATACAGAGGCCTCTGATGTGACGTGGACAGACAACGGAACATTTAACCTGTCTGAGGGACATACGCCCCAGACTGAGAACTCAGATGACCTAGACAGAGAAGAACTATTCATAGGGGGCCTCCCGGAATTCCCCTCCTTGGACAACGGCACCAATGGGGAGGACGATGACGACCTGAGCATCGGCCTACCCACCCCCCCTTCCCAACCCCAGCACAGCAGAGCCAAGGGGGGGTCCGTGCCCCCCCTCCAGGGGGACCCTTCCACCCAGGCCATGGAgtttgtccacaagatggcaggcAATGTCATTGCAGCCGCCGCCACCGCTGTCATTCAGGAGAGGCTGGAGGCCGCCATCGGTAACACCATACCCACAGACCCCCACCCCAGGTCCCTGCTGTTCCCCAACCCCACGACACTGCTGCCCCTGGACCTGGCAGAGGAGTCATCATCGGACAGCGATGTGGAGGAATTTGAGCTGCTGGACCAGTCCGAGCTGGAGCAGCTGGAAGGGGAGCTGGGCCTTGGGGCGAGCGCAGCAGTGGCGGCCAAAGAGCCCAAAAAATCATTGTCTTCTTCCAGTGGCTTCTTTTCAAAACTCCTGGGCCGCCATTgattagagcaggggtgtcaggAGGATGTGGTGCAGGTCTAGTAGGGGGTTAGAGGGTAGAGGGCacgtggagacagagagaggccttGTTTGTGGGGTGGGGAGGTTAGGGGTGCAGAGACTGGGGGTTTTGCGAAACAATATGGTGTTGCATTCTTTTTCCAGTTGTACTAATAATGAATATTCCTGCATTACATGATCAATATGTTCGAGAGCGAGAGGAAGGGAGTGTTCAGCAAGCATGATGCTATATGGAGATTGGAGATGTGGAGTTGTCAGAGATCTGTGTCCGTGTTGGTGTGGTGAGATTGTGACTTTTATTTAACGATTTTCACATCATCAACCTGTAGTAAAGTTATGGGtaggaatggaatggaatgtggTGGTGTTTCTGATTTGCTGCCAAAAGGACTAAATTTGTGTTTTGTTGGTTAATTTCTTCAACAGATGATCAGGTCTATATAATTATCGAACATACATTAGTAATGGAAAGGAAACACAGACTTTTTGTTTAAGTATTAAAATACTAATTTTAGTAATACAATTGTAGGCAGAAGTTGAtgcagagtacagtatatgataGTTCTCCCCAAGTTCTGCAAAGTGTCTAAGAGATCCTGTAACTCATAGCCTCCCCAATCCCCCTTACATAACTTTCCCTAgcaacaacattttaataaatctaACCTCCCCTCTGACAGCAGGAACCATCTTATCAGCAAGTAAAATCTCAGAAGTGGGTTTGACCAAAACTTGACCTTTCATCACAAGTATAGAGTCATAACAATGTGAACGAGTGTAAGCATCTTCTAACAAGGGActggtttcatcaggtctgtggcagccttgtgttctcagaaaaccagAATCACGGTGGGATCCAGATAGGAGTCTGAACGTAGACACCTTCTGATAGTGTCTGAAGGGCACAACACTCAAAACAGGTGTTAACACACACAGAGGTCTCCTGAGGAGACCTTACAATTTATCATAACATCATTTAATGAAACCCTATAAAAGGTATGAGGCCTTGGTTTAACCTTCTTTAGTTTCAAGATTCCTACACTGGCCGATTGGGCCCATTCAACTCCATCACCCATTAATCTACAGTACAGCTTAATTCGACCAGACCTACGACAACAATGACAATCATCTGTGCTAACAATGGAACCAATTGTTCAAACGCATACTGTTTGTGCATATTGGTTCTTACTGCAGCACAAGTAAGGTAACAAATCCTGTAGTTAACTGGAACATGCAACGATGGGATGACAGATAATAGTAAAattatattttgtatattttctttttgtttttctaaTTTTGTATATTGTTCATGAAGCCATAATATAGGTGAGGGACTTCACATTTTACGACATGCAATAGGTCTCACGATATTATGCATGGTAATCTTTTGACCTTTAACGGATGTTCGGTAACACTTTTCTAAAAGAGATATTCCTCTCAAATCTAACATACAACCTTATATTTTGAGTGGAACATCCTTTTAAAGTTCATTGTCTGGGATGCTGACATATGACTGACACAAGAATGTTGTAATTTCTCTTTGAAAATTTTGTGACAAACCATTTATAAGTTCATTGGGCACTGACTTTTTTTCCTGTCAATGTTTCCTTGTCTGGTGACTTTGTCAGGACAAAGTAATTGAACTGAAATAGCACTTGATTCATTCTGCTTGTGAATGTTTCATCAGTTGTCACAAACTAGTGTTATGTCAGTGTTATGGCAGAATCCATGTCAGTCAGGTAGCAGTATTATAATGCTGTTATAGCTCTCTACACTTCAAGCAAAGTGTTGCTCCACATTTTATTTGTACTTGTACCTTATTATTTGACAATGCACTTGGGACATAATCACTTAGTAGTGACAGTTTTAAACTTCATGCAAACAGAATGCAAGATCTCTTTCGTTGGACATGAAAGATTCACCATAACAGCTTGCACGGTACATTATTGAGGTTGTCTGTCGATCGCAAAGAGGTAAAAAATTCACCCCAAAATGTTTAGGTGGGGATATGCAGCTGCAAGTTGCCATTGTTACTGTGTAATTTGTTTGAAGTTAATGTTCGCCTTCTTGAGTAAAGTTGAAGGGCTAACTGAGCTCAATATGTCATAAGGAATTGACCAGGCCCACAAATTGGGGAAAACAAACATTATTTCCTATTGACCCCCATTGTAAAAGAGCCAACTTCGTCATAGATTTTTTGTTGTGCCGAAAAGCTGTAACCAGGTCAAAAATCCGGACCTACGGTTCGCAATGCTCCCATGTAGGAAAATAGAGCCTGGGAGAAGAGCCCTTTGGCTTCAGGCTATTCGGCATCGGAGAGTGGGAAATTGTGGGGACCCGGTGTCAAAGTAGGCTACACGTAGctatgtgtgtggaaaacatttaaTGACAGATAAAGACATTTAACTTGATTAGTATAGTCTGTTTGTAgctacttgtagctgtatagtccaTTTGTTTGCGTTTTTGGTATTGGCTAGCTTAATGTTTCGgtcgtagctagctagcactcactcTCACGTGGCTGCTAGCACCATAATGAAAAGGGGCATGAAGGAATTCCTTTAATATGCTCTTCTAAGTAGTGAGAATGCTCGGGAGCAGGCAATGTTAAAAATGAATCTTTAGACAtacttttcttaaatgtagttttgtaattgactGAAACAAGCAGACAACAAGAGAAAGGTCAAGTTGTTGCTGTGAGCCAatggggtaacctaggtaaccacagTTTTTTTTTGCCAACGGGCAGGCAGGGCCTGCTGCGTTCTATCTAATACCGActgggactatccaaataaaataataaaagttATCAGACCAGGCTTGTTTTTCCGATGATTGACAAGGGTAGGAGGTACATCCTGggggaaaatatatttcatattgcGCAACACTTAATTCATTATTGAATATGCCAATAATAAACCCCTGTGCTAAAAACAAGATTGACAACGTGTAATAACCATTAGTTCTTGATTCTCCATCATTATAGCCTGCCTTTTTCTAAATATATGCTATTACTGTCAAGACAAATATATGCATTTTACACCACAGAAAATGAACATATAGCATATAATCAGGAGTTTAAACAAGCCATTTATTGATTAACAATAGCCATGAGTTATTATGCATTCTGTTCGCTATCATGTCAAATCATGGCAGTATGTGATTGCCTTACAGTGACAAATCCACTGAACTGTGTCTTCTTTAAACTGCTCAATAGTTTCTTCACATTAGAAAGATCATCTTACACACTTGTGAGTTGTTAGTTATTTGTCTGAAGTGAAGCATAAGCAAAATGTAGTTGTATGTAAATGATCAAGAATATTATTAATAAAGTGTGAAAATGTAA

Function

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU810340 lncRNA downstream 46460 45459133 ~ 45462621 (-) False G712815
TU810339 lncRNA downstream 48098 45460080 ~ 45460983 (-) True G712815
TU810336 lncRNA downstream 52554 45455909 ~ 45456527 (-) True G712812
TU810334 lncRNA downstream 55765 45453032 ~ 45453316 (-) True G712810
TU810333 lncRNA downstream 56647 45452208 ~ 45452434 (-) True G712809
TU810482 lncRNA upstream 55612 45657176 ~ 45711563 (-) False G712949
TU810481 lncRNA upstream 106338 45707902 ~ 45711563 (-) True G712949
TU810501 lncRNA upstream 110531 45712095 ~ 45712403 (-) True G712967
TU810502 lncRNA upstream 111052 45712616 ~ 45712839 (-) True G712968
TU810503 lncRNA upstream 111982 45713546 ~ 45713820 (-) True G712969
XM_021612609.2 mRNA downstream 13980 45485018 ~ 45495101 (-) False znf622
XM_036985484.1 mRNA downstream 13980 45485018 ~ 45495101 (-) True znf622
XM_021612608.2 mRNA downstream 13981 45485018 ~ 45495100 (-) False znf622
XM_021612606.2 mRNA downstream 335340 45122083 ~ 45173741 (-) True basp1
XR_002474328.2 mRNA downstream 524813 44980969 ~ 44984268 (-) True LOC110529115
XM_021612616.2 mRNA upstream 77295 45678859 ~ 45684992 (-) True nol7
XM_021612624.2 mRNA upstream 191684 45793248 ~ 45924729 (-) False amph
XM_021612626.2 mRNA upstream 191684 45793248 ~ 45924729 (-) False amph
XM_021612621.2 mRNA upstream 191684 45793248 ~ 45924730 (-) False amph
XM_021612622.2 mRNA upstream 191684 45793248 ~ 45924730 (-) False amph
TU810338 other downstream 50833 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 969577 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 2337999 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 2788382 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 5549468 39956961 ~ 39959613 (-) True slc22a16
TU811283 other upstream 709566 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 1449903 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 1576860 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 2687378 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2940727 48542291 ~ 48616523 (-) True dlg1l

Expression Profile