RNA id: XM_021612616.2



Basic Information


Item Value
RNA id XM_021612616.2
length 1377
RNA type mRNA
GC content 0.42
exon number 8
gene id nol7
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45678859 ~ 45684992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cTTGTTTATTATGTGAGAATTTTTGGGGtgagtgtttatttatttattttttcaaacaAAGTAGaagggagttgtactccagtctagtaggtggcggtaatgcataAAATGTTGGTTGAAAAAGAAGTTCAACCTCACCGAAGAAGTGGATTGATGACGTATCGACCTAAAATGGCGAAAAAACTGCTTAGGAAATCTCCTTCGTCCTCAAATAAATTCAATAGTGCAAACATGACGGATGATTTTCAATTACATCTCGACTCAAGCGACGACGACGCTCCAGAAGAGGTGACCTTCGAAGAGTCAAAGGCTTCTGCTCTACGGAGCATGAAAAATGCGTTGGAGACATCCAAAAGAGAAAAGGATTTGCTCAAAGAAAAGCGAAGGAAAAGACAGGAACTGTTTCAAGAACAGAAGAAAAGAAGACTTCTCCCTGCACATATTCTGGAAGAAATTGACACAGCTCCAGCAAAAAAACAGAAGCTACCTGGAGATCAAGCTGAAAGCAACCATGAAGAGGCAAGCTGTTCATGGGAGGAGGGGCGCGAAGGATCGAAAGAAGGGTATGAGAAAGAGACGAAGAAAGGATTCAAAGGAAATATCCGGAGTCTGAAGGGTAACTACAGCGTAATGAGGGTGGCGGACCAATCTTCAACCAACTCCCAACAGCAGACAGCCATGGATTTTATACAGGCCAGACTGTATGGCCCGGGAAGTCAGAGGACGACAAACAATGAACTTCTCTCCCTTGAAAATAAGAGAGGCCCAAATAAAAGTGCGGCCATGCAGTTTGTGAATAAGAAATGGGGCACAGAGAAGAAAGCAAAGGCGGAGAAGTTGAAGAAGCAATGGATTCAGAAACAGAAGGTTCCCTCAAGCTGAGCAAATAGGGAAAATATGGGGTGGACACCAATCGGGTAATCGCCCTTTCACTCTGCCCTGATCTGAAGGTGCTGGATAAGTTGAATAATTATGGTTATAGATCAAACTAGCTTTCTGATTTGGGTCAAAGTGCTTTCACCTATCCAGGCCATTGAGGAGCTGGATCAAGCATCTccgagtagaagtgctgatcatGTAATTTGTCACAAAAATGTAAATgccacatgtaaagtgttggtcccatgtttcatgagctgaaataaaatatcccagaaattcaCACAAAAAGCTTCTCATTGTGtgcacatccctgttagtgagcatatctgacaggtgtggcatatcaagaagctgattaaacagcatgataattactaGGGCTGTCCCAGACTAAAGAAAATCTTGGTCAACCGAGTCATCCTGTTCTGTCAATGTTTAAATGTATTGTTCCACAGTCACACACCCtgtgtttgaataaaatcaactacACATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU810340 lncRNA downstream 216238 45459133 ~ 45462621 (-) False G712815
TU810339 lncRNA downstream 217876 45460080 ~ 45460983 (-) True G712815
TU810336 lncRNA downstream 222332 45455909 ~ 45456527 (-) True G712812
TU810334 lncRNA downstream 225543 45453032 ~ 45453316 (-) True G712810
TU810333 lncRNA downstream 226425 45452208 ~ 45452434 (-) True G712809
TU810481 lncRNA upstream 22910 45707902 ~ 45711563 (-) True G712949
TU810501 lncRNA upstream 27103 45712095 ~ 45712403 (-) True G712967
TU810502 lncRNA upstream 27624 45712616 ~ 45712839 (-) True G712968
TU810503 lncRNA upstream 28554 45713546 ~ 45713820 (-) True G712969
TU810506 lncRNA upstream 32673 45717665 ~ 45717876 (-) True G712972
XM_021612610.2 mRNA downstream 77295 45509081 ~ 45601564 (-) True retreg1
XM_021612611.2 mRNA downstream 132742 45509081 ~ 45546117 (-) False retreg1
XM_021612609.2 mRNA downstream 183758 45485018 ~ 45495101 (-) False znf622
XM_036985484.1 mRNA downstream 183758 45485018 ~ 45495101 (-) True znf622
XM_021612608.2 mRNA downstream 183759 45485018 ~ 45495100 (-) False znf622
XM_021612624.2 mRNA upstream 108256 45793248 ~ 45924729 (-) False amph
XM_021612626.2 mRNA upstream 108256 45793248 ~ 45924729 (-) False amph
XM_021612621.2 mRNA upstream 108256 45793248 ~ 45924730 (-) False amph
XM_021612622.2 mRNA upstream 108256 45793248 ~ 45924730 (-) False amph
XM_021612623.2 mRNA upstream 108256 45793248 ~ 45924730 (-) False amph
TU810338 other downstream 220611 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1139355 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 2507777 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 2958160 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 5719246 39956961 ~ 39959613 (-) True slc22a16
TU811283 other upstream 626138 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 1366475 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 1493432 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 2603950 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2857299 48542291 ~ 48616523 (-) True dlg1l

Expression Profile


XM_021612616.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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XM_021612616.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021612616.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.