RNA id: XM_021612625.2


Basic Information

Item Value
RNA id XM_021612625.2
length 3539
RNA type mRNA
GC content 0.50
exon number 24
gene id amph
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45793248 ~ 45924730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCCTAGTCCGTCATCATTTCTCTGTCCTAGGTGCTAAACTGAAGCGACGCTCATCCCGTTGCAGTATCAGCAGCCATGGCCGAAATAAAGACGGGGATTTTCGCCAAAAACGTCCAGAAACGGCTAAGCAGGGCGCAGGAAAAGgtactgCAGAAACTGGGAAAGGCGGATGAGACGAAAGATGACCATTTTGATCAAGCCGTCCAGAACTTCAAGCGACAGGAGACGGAGGGCTCCCGGCTGCAGAGGGAGATGAAGGCATATCTGGCGGCAGTGAAAGCAATGCAACAGGCCTCCATGAACCTGACAGAGTCCCTACATGAAGTCTACGAGCCGGACTGGCACGGGAAGGACGATGTCTTGAGCATCGGGAAGAACTGTGATGTCTTATGGGAGGACTTCCATCAGAAGCTGGTTGATTCATCACTTATCACACTGGACACGTACCTGCAACAGTTCCCCGACCTCAAGATCCGTGTGGCGAAAAGAAGCAGAAAGCTAATTGACTACGATAGTGCACGGCACCATCTCGAGACCATTCAGGCGGTGGTCAATAGAAGTGATCGGAAGGTCTCCAAGGCAGAGGACGAGTTGAAAAAAGCCCAGAAGGTGTTTGATGAGCTCAATGTTGATCTGCAGGACGAGCTACCAACTCTCTGGGACAGCCGAGTTGGTTTTTACGTGAACACATTCAAGAACGTGACGAACCTGGAGGCCAAATTCCACCGGGAAATCTCTGTGCTCTGTAAGCAGCTGTATGAAGTGATGACCAAGCTGGGAGAGCAACACTCTGACAAAATGTTCACCATACAGGGAGCGCCCAGTGATTCAGGACCTTTGCGACTCTCTCGGGCCCCCTCGCCACCGGACAGCGACAGTGACGAGAGCCCAGTGGACACTCCTAACCACATGCTGGCACCTGCCTCTCCCGGCCCGCCCCGGCCCAAATCTCCTTCAGGCCAGTTCAAAAAGGGACCACCAGTGCCCCCGCCACCCAAGACCCCGACCAAGGAGCTGCACCAGGAGCAGATAATCGACTTGTTTGGGGGCCAGTTCTTACCCGCGGCTACGCCCTCGCAGCCAAATGAAAGACCCGGAGAATCTCTCCTGGATCTGGACTTTGATCCATTCAAGCCTGACGGCAACACCACTATCGGACAGGCTGCACCACCCATAACACAGCAACTACCCTGGGATTTGTGGACAgGAAATGCTGAACCTGCGCAGCCTGCGGGAGACCCCAGCTTCGCCACCGACTGGGCTGCTGACTTCGGCTCGGCCCCGGCAAAAGGAGACTCTGTCCCGTCTGCCACCGAGGCGGCAGCCGGCGAGGTTCCAGCGACCACAAGGCAGGACGAGGCCCAAGGCTGGCCTGCAGCGGACGGCTGGGGCggggaggcaggggaggcagcagcagcagagcagCCACAGGGGGCCGAAACGGCCGCAGCTGGAGACGAGGTGACCAACAATGCATTTAACGGATTTCCCCAGATGGAAGCAACAGCCCCAACATTTGTTGCAGATTTTGATAAGCTGAATGAAAGCAATGCCACCATGGCCCCTGAAGCTGCTGCGCCCCCAGCTGAGACTGCTGTGGCCCCGGAGGCAACAGCTGAGACTGCTGTGGCCCCGGAGGTCCTTGGGACTGAGGCCTCAGATGCCACAGAGGCAGCGGCCGAGGCAGGGCAAATCCAGGAGCCTGCTTCCCCgactagtgaggctgaggcaGCCGAGAGTGCCACCAGCCCTGGAGAGGAGAATCCTGATTTCACTGTGGGGTCTCCAGTGACATCTGCAGAACCTGAGGGGGCTTCACCAACTGAGATCCTCCCAGTTGAAGAGGCTGAAAAAGCATACCCCAGCGAAACAGCTCCCCCGGAATCCGTTCCGACCCCGGAGGAAATGAAGGAGTCCCCTGTCGAGGAGACTCCGGAGAAGATGCCTATTCCCTCAGTGGTGATTGAGCCAGCCTCCAGCAACGAAGGTGACGATGACCGCGACATTATTGACATTTCCCCAACGACCATCAGCGACAACGGAGTGACAGCGGACACCCAGACGGCCAAAGACATCACCACCTCCGACGGCCCACCAGGACTCCCTCCTGGCTTCCTTTACAAGGTGGAGACTCTGCATGACTTTGAAGCTGCAAACTCAGACGAGCTGGAGCTGAAGAAAGGTGACGTGGTTCTGGTTGTTCCCACGGCTACAGCAGAAGATCAGGATGCGGGTTGGCTTACAGGTATCAAGGAAAGCGAATGGTCGCATCTTGGGGCCAGTGCCCACAAAGGACTCTTCCCAGAAAACTTCACACAGCGCTTGGAGTAACCATCTGAGCCCGGAGAAAAGAGTTGTGGAGGAGGTGAAGGGGCCTGTGTTCTCCAGACAATGTCTAGCCGAGCGTCTGCTAACCCGTCTGTGACCTTGTTTGCAAGACAGACCAAGGTCGTCACTGATAGAGGAAAGGACACAAACAATCAACAAAAAACAAACCAAGTGTGGATAAACACTAGTACCTGCTCGGAGCATAACGAAAAATAACATGAGCATGATGCGATAGTATGGTCTaccctttttttgtttgttaaccTTTAAGCAGCAGCGAATTGATGTGTGCTTTGTTGGAAGTGTGGTGACCTCCACATGTAAATCCCTTGATCTCCACATGTAAATCCATATCTGTTTCAAGGATAAACTAAAATGAGAAATACctcctgaagaaaaaaaaaagttaccTTATCTTCTCTGCACCAAGTGTATTGTATTGATTTTGTTGCTCTGCAGTGGAATTTCTAAGAATCTGTAGTGCTATGATCTAACTGTTCTTGAGTGTTACTTTAAATGTTTTCTTTCTGACATTTCAGCCATAAATGTTACCTTGCATCACTTGTTAGTGTTCTCTTGTAGTGTCATGGCTGTATGTGTGCGGCTGTAGTGATTATTTTTTTGGAGTACTCAGTGTTGACATTGTTCATTGACAAGACATGCTGTGCTCTTGCCGAAACAACATAATTGACGTTGAAATTCTGAGCATTGGAATGGGACGTCCAATGAGTTTCCAGCATGAAAAATGATGTTTGTGATGAAGCTGAGATCCGGGAACTGGCAGATGCAGCTTTctcaaagtaaaataaaaaaataacactgTAGCTCCCTACATAAAACGTTAATGTGTATATCCTTATACCTTATATCTGCAATTACATATATACAAGAAACCAAGTCAACCAGTGGAAAGACATATGAAGTTATTTATTTGTGAATGAAATGTTAtgataaattgtatttatttaactttatATTTTTAAAGTTTAAGATCACTGGGAAGGTGCTGGGAGAGAAATCAGATATGCAATTTATGTAATTGGTTTATATACTGTAGGGTCACAATAGTCCAACTGTTCAGTATAGCAATGAATATGACGTCACTCCTGTTTTCGTACAGTTAGCCCTCACTGTATAACCTTTTTTTGTGATATACATATCTGTGATTATTTATCTAAAGGTGAATAAAGAATAGTTGATATGTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU810554 lncRNA downstream 8184 45784786 ~ 45785064 (-) True G713011
TU810545 lncRNA downstream 20869 45772129 ~ 45772379 (-) True G713002
TU810541 lncRNA downstream 26160 45763667 ~ 45767088 (-) True G712998
TU810507 lncRNA downstream 74749 45718282 ~ 45718499 (-) True G712973
TU810506 lncRNA downstream 75372 45717665 ~ 45717876 (-) True G712972
TU810663 lncRNA upstream 30141 45954871 ~ 45955074 (-) True G713114
TU810691 lncRNA upstream 66213 45990943 ~ 45991219 (-) True G713141
TU810692 lncRNA upstream 67085 45991815 ~ 45992105 (-) True G713142
TU810700 lncRNA upstream 77429 46002159 ~ 46002461 (-) True G713150
TU810714 lncRNA upstream 112516 46037246 ~ 46037460 (-) True G713164
XM_021612616.2 mRNA downstream 108256 45678859 ~ 45684992 (-) True nol7
XM_021612610.2 mRNA downstream 191684 45509081 ~ 45601564 (-) True retreg1
XM_021612611.2 mRNA downstream 247131 45509081 ~ 45546117 (-) False retreg1
XM_021612609.2 mRNA downstream 298147 45485018 ~ 45495101 (-) False znf622
XM_021612631.2 mRNA upstream 81681 46006411 ~ 46033000 (-) True tmem71
XM_021612634.2 mRNA upstream 137013 46061743 ~ 46074046 (-) False ift57
XM_036985498.1 mRNA upstream 137751 46062481 ~ 46074020 (-) True ift57
XM_021612635.2 mRNA upstream 198014 46122744 ~ 46133988 (-) True cavin4a
XM_021612636.2 mRNA upstream 238923 46163653 ~ 46241435 (-) False tmeff1a
TU810338 other downstream 335000 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1253744 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 2622166 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3072549 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 5833635 39956961 ~ 39959613 (-) True slc22a16
TU811283 other upstream 386400 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 1126737 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 1253694 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 2364212 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2617561 48542291 ~ 48616523 (-) True dlg1l

Expression Profile