RNA id: XM_021612637.2


Basic Information

Item Value
RNA id XM_021612637.2
length 3388
RNA type mRNA
GC content 0.44
exon number 10
gene id tmeff1a
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46163653 ~ 46241437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGACTATTCTCTCAAAATCTCTTTGTTGTAGCTGCTGTGGCTGTTTCGCATCCGGCGCCTTTTCTCTTTAATTCCCGGTTATTGAAACCAGATTTGGTTTTATGAACGGAAACGTACCGGGAGTGTAGGACAGCTTACATTGATTCAAAGGAAGATTCAAGCGAGGTGTTGTTTTGAAAGGAGGGATTTGCCTCGGTGTTAAATCCGGGGCGTCAGATAAATCATAAAACGACCCAGAGCGTGTTGGAAGGACGGACTACGAGGATGCTGTTGCTGCTTCTGTTGTCGTCTTGGGGAATTTCGTCAGCCACCGAGGTTTCATAGATGACCACCTCGTTTATTTGGAGTAAAGAGCCTTCAGAATTGTGTGCTCTGCATCTAAGAATACCGCTATATTATTTTTGCATCGCGTCCCGTTGTCATTGTGCGTGTTCCTTCGTGCATGCATCCTTGCTTCTATGCTGTGTTCTTTCATTCAACACAATTTACCCATCAATATTTTCGTCAAGTTGTCGAACTGACTTAATTTTGGATACATTCTGTGACAGTAGCCTTGTTTGGTTATCGTCTCCATCCTTTTCATCATGGTTGGAAGCTTGCGACCTGGTAGGTTGCCCGGACCTTTGGCTGGTTATTCCTTGGCGTTCCTCTGCTTCGTGGCTATCGCTTCATTGCCTGGATCATTGGCATCCTACCTACAAAGTGGCGAATGCAAAGGGAAAGGAAAAGACTGCACAGATCTGTCGGAGAAGAAGAGCGACCTACGAGTGTGTGACGACTCCAGCTGCCGTTTTGGAGGTGTCTGCAGAGATGACGGAGCCACGCTGAAGTGTGTGTGCCAGTTTCAGTGCCACAAAAACTACATCCCTGTGTGTGGCTCCAATGGCGATACCTACCAGAATGAATGCTACCGAAGACAGGCCTCCTGCAAACAGCAGAGGCTCATATCACGCTCATCTGATGGGCCATGCTCTGCAGATACTGGCTCCGGCTCTGGAGACGGAGAATACGAAGGCTCAGGCACAGACGCGGGGAAGAAGTTCACTAAGTGCGGCACGTGCAAGTATGGAGCGGAATGCGACGAGGACTCTGAGGACGTCTGGTGCATATGTAACATTGACTGCAGTGGACACAACGAGAACCCTGTGTGTGCCACGGACGGAAACTCCTACAACAACCCCTGTCTGGTCCGAGAAGCCTCGTGCATGAAGCAGGAGCAGATCGACGTCAAGCATCTTGGGAGATGCCCAGATAAAGAGAAAATGGGGAAGAAAGATGACGGCAGTTCGTACAATCTTTTAGACACCGCAGACCCAGGGGATGGCTTCTACGCCGGGATGCACATCCCCTGTGCGGAGAGCTACGCTGGCTTCTGTGTACACGGGAAATGCGAGATCAAGTACAACATGGCCACCTGCAGGTGTGACTCGGGCTACAAGGGGGCACAGTGCGAGGAGCCCCAGGACTTCAACGTCCTGTATGTGGTGCCCAGCGGCCAGAAGCTCCACTACGTCCTCATCGCCGCCATCATTGGCGCCGTACAGATCGCCGTCATCGTTGCCGTGGTGATGTGCATCATGAGGAAATGCCCGAAAAACAACCGTGGCCGTCGACAAAAGCAAAACCTCGGACACTTCTCATCAGACACTAACTCCAGGATGGTATAGCTCgtgttttttaatatttttttcttacaaCGTGGAACACAATTTTTTTTATGTAAAGATGTgtcattttattattttattcttCCAAAAATATAGAAGAATGAGGATATTTATTTCAGGGACCTTACTTTTCTGTTTCTCTGGTGGATATGTAGCGTATATTGCAGCgctattttttacattttccagCCACATACTGGTAGGAGGAACCGTCGACCATGCCGCTCGTCGCTTACCCTTATATCGGCATTTTTGTTTAGTTCTTTTTTTATTCCTGTTTGTTTACTTTTTGCTTTTTTCGAAAATACGGTACCTTCGGCGAACTGGAAAATGAATCCCAAGGAAACATATACAGCGTCTGCCTATATGGAATGTGCTACGTATTGGAAACAATTATCtccaagactctctctctctctgtctttttacAAATGATGTGCAGCTGATCACCAAAATGACGTTTTTATTTATTGGGTGAGGGGTCAGCCAGCAAGGTGGATAATATGTTTACACTTATTCTTTGATATGTAATTACAATTTTAAAGAATACACTGTGTTTTAACTAGCTAATcatttattttgtcattttattcatggtgacattttttacgtttacattattattatgagGATTCTTTTTCTAATTCTAGTTACTGTACGGTATATTGCATGACTTGTGAAACTGTGTTCTGTGGTGTAGTTTTAACTTAAAGAAAAGATGACAAGTCCTCAAAGCTTTCATCTCAGCAGCTCTACCAGTCCGATTATGCCAGCACATTATGATAGGCCTCCATGTAAAATAGAATGGATGGTAGATTGATTGATTtgtcagtgggggaaaaaaggaaTGTGTAATGTTTAAAATAATTCTCCTGTCAGTCTTCTCAAACCAATCATACTGGGTTACATCAAAGTATCTATGACTGGAGTTTGACTTTGATGGCGGAGACATGAAAGTGGATTGTAATGCGTTGGGGcagcatttttgggggggggtcttTTAACTGTCTTACAATCACAGGATTGTAATGAAAGAGCTGTTGACTTTGGGGGAGCAGTGGTATTTAGTTTAATGATACAAAATGAAGGACTACACATTGAGATAATAAAAACTTAAAAACGTATTGGTTGCCGAAATGGATGTAATCAAGGGTTTTCTTTGAATGTGAGGATGTAATGCTGTTGTTGTTTCTCCACAAAACGTTACTTACATTTGCTCCTCAGCAAGACATTCCAAATACAGAGAAAATGTTGAATGGACGAATGAATAGGATGAAAAAGAACACTTCCGAGGTCCAAAGTGTAATGCTTAACCGCCAGTTTAAGtagttatttatttcatcactgGGGCCTTTATGTAAATGTCTTTAGTCTGCCTACATCTGGTCGTAGGTCTTTGAGCAAAGTGTTTCTACTTGTTCTTTACCATCTCAGCCGTGACTATAAATGTGACTAGAATGTGTTTGACATGTCGTTGATCTTCTGCATGTAGGACTTCATAGGCAATTTTTGTCCCCAAAAAATAAAATGGAAATGTTTTTTAATGTGTCATGGTTTGGAATGCATCAATAGGAATAATAGGAATGAATGTCCTGTTTTAGTACACTGTCATCCCTCAACAGAGAGGGAAGGGTAACCACACCACTCGTGTTCTGTTTGACGCTTGatgcgctgcaagtcccgcctttcccacctcattggtttttaggagaaTTTAC

Function

GO: NA

KEGG:

id description
K23607 TMEFF1; tomoregulin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU810763 lncRNA downstream 26715 46136731 ~ 46136938 (-) True G713211
TU810754 lncRNA downstream 41922 46121282 ~ 46121731 (-) True G713202
TU810755 lncRNA downstream 42832 46120054 ~ 46120821 (-) True G713203
TU810753 lncRNA downstream 43839 46116676 ~ 46119814 (-) True G713201
TU810714 lncRNA downstream 126193 46037246 ~ 46037460 (-) True G713164
TU810839 lncRNA upstream 419 46241856 ~ 46242057 (-) True G713287
TU810845 lncRNA upstream 4628 46246065 ~ 46246429 (-) True G713293
TU811239 lncRNA upstream 13039 46254476 ~ 46339044 (-) True G713660
TU811246 lncRNA upstream 22943 46264380 ~ 46272772 (-) True G713667
TU811275 lncRNA upstream 113222 46354659 ~ 46424529 (-) True G713694
XM_021612635.2 mRNA downstream 29665 46122744 ~ 46133988 (-) True cavin4a
XM_021612634.2 mRNA downstream 89607 46061743 ~ 46074046 (-) False ift57
XM_036985498.1 mRNA downstream 89633 46062481 ~ 46074020 (-) True ift57
XM_021612631.2 mRNA downstream 130653 46006411 ~ 46033000 (-) True tmem71
XM_036985497.1 mRNA downstream 238923 45793248 ~ 45924730 (-) True amph
XM_021612641.2 mRNA upstream 68295 46309732 ~ 46325685 (-) False crfb16
XM_036985500.1 mRNA upstream 68295 46309732 ~ 46325685 (-) False crfb16
XM_036985501.1 mRNA upstream 147505 46388942 ~ 46395118 (-) False LOC110529956
XM_036985502.1 mRNA upstream 147505 46388942 ~ 46395118 (-) True LOC110529956
XM_021612647.2 mRNA upstream 166296 46407733 ~ 46417579 (-) True dusp28
TU810338 other downstream 705405 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1624149 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 2992571 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3442954 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 6204040 39956961 ~ 39959613 (-) True slc22a16
TU811283 other upstream 69693 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 810030 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 936987 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 2047505 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2300854 48542291 ~ 48616523 (-) True dlg1l

Expression Profile