RNA id: XM_036985500.1


Basic Information

Item Value
RNA id XM_036985500.1
length 2570
RNA type mRNA
GC content 0.44
exon number 7
gene id crfb16
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46309732 ~ 46325685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCAGCACATCACACCTttcctctctcaaacacacacacttttataaGCTTTACCTACATAACCACTCTCTCAGACGCACCATAAAATGCTATTGATATGTCtttcacataaaaacacacatttataACAAACCTATTTATGTATTCTCGCAAACACATTCTGAGGTCATATGACAAGCCTTTTACAGGAGACACAGTGGGACAGCAAAGGAAGTGTGGCAGAGGAACCATCACAAGGACAGAGAAGAGTGCTAGGATCACAGTCATAGGAGAGGTCCCACTCCGTCTGAGGAAAGTTTGAGTTACAGTTGGTATAACAGTCTGCAGTGATCATGTTACAGTCGCAACAAGAACGATCAATGGACAACGAGATGACTATATTGCAAACATAAAAGCAGTGATCACACTATTCCTGGGATTGTTTGTATTACGATCAAATTAGTGGTGAGAGACGGTCAACACAGTGATTGCACACTTGATCACAGCAGTGCTCCTACTCTTCTCCATACAGAGGGGCTATGAGACTGAGAATGAGCTTTTTTGACAGCCAGTTAATACTTGTCCTCAACATCGTCACAAACTATGCCTGGCTGCTGCCATCGCCGTGGGGAATTTCCATGGAGTCTGTAAATATGAGGCACTTGCTCAAGTGGCGGCGTCAACAGTCTCCTTGCAGTTCTGTCATCTACTCTGTGCAGTTCCAGGGGGAATTTGAGCTGAGGATCTTGAATGGAAGTTGGGAGGACGCGGTTGGTTGTCAGCGGGTCACACGGACGGAGTGCGACCTGACCTTTGACCTTGGTTCTGACTCAGACTACAACATCCGCGTGCGGGCAGAGTGCGGAAGGCGTGTGTCACCGTGGGCTGAGCTCGGGAGGCCATtcaacaggagagagaCAATCCTGACGGTGCCAGCTATAACTGTGACCACCATGGGTGATGCTCTTCAGGTGACTTTCAAAGGCCTTCCCCTGACCGTGGGAGTGACTGTGACTATCTGGAAGAGAGGCGAGTTGGTCAGGGGCAAGTCCTCCTTGCGTGTGATCACAGTGCAACAGAATCCGCTCCACATCGACGCCCTGCAGGAGGGAGCAGTGTACTGCGTCAAAGCCCAGGCCCATCTGGACACCcacagcaaaagcagcagcactGACACACAGTGTGTCTCCATCACAGTAACCCACTGTAGGCCAGAGGCCTGCTACGCCTATTTCCGCAAGGAGCCACAGCCCACTGCACTGCTCCTTGATTGGCCACTCACAAGAGTCAAGATCTATCCCCAAGATGAGCTTCGTGAGCCAATCCATGCCGTCCTTTTAAGTGAGCTGCAAAGAGAACTGAGAACTGAGCCATCCAGTCAATTGGATAAGTGGACACAATCTATATGTTCAGAAGGCACAGACAGACCATATCAAGTTTGATTGATACTGTAGGTTAATAAGAATGGTCAGAAGTGACGAGTCTGGATTGGAGAAGTCAGGAGGCCGGGAGTTGTTCGGAGGGAGACAGAAGGGtcttgtgtggctcagttggttagGGCAGTGATGCTTATAactccagggttgtgggtttgattcccatgagGGACCAGCATGAAAAGTGaatgcactcacttctgtaagtctgctaaatgacaaatgtcAATGTACAATTTAGTATTTGTGTTCTAGATAAGTCAGAGATGAATATGGGTGAGTCTCCAAATATAGGAACTTTATTTACATCATGATATGTTCTAATTCAATCTAAGACAATAACAAAGTCATTGTTTATATACTATTTCTATTAACAGCTGGCTATTCCAAACCATGACTCCGAAAATAAAGCAATGAATGATTTTAGTAATTTTTATTTCAGTAGAACATCTTGACTTGTTTTATCGAAAGATACTGATCTGATTAttagtttagtttatttttaaacttctttaaaaaaaaaatgatttcacTACCGTAATACACACACTAAAAGCCTGTAGAATGAATGTACCTTAAGCCACACCCCTACAAATATCACCAGGTGATGGGATTGCACCCCTCTACGTGGCCACATGGTGAATAGTCTGTTTGCAAAGATTTTGGAGAAAATTAGTGAGCAAGTTGGTAaatgtatgtattgtatgtatgtattttcAAGAAGAAGTGTCACTACCTATCTAATATATCAATAAATATGTAAAGTACGGTTTTGGgacaaaaatatacagtatgaTTGCTGGGATGTACATCTGTCCAAATGAAAGATCGCCCTCCATATGTTAGCTATGGGGATTCTTTATTAAAGTCCAAAATAAGTCTAAATTGTCACAACCCAAACAATTGACACCAGTAGTGATGCGTgcgtcagctgtttgttcacctgcaCCCGCCCACAAATGCTAATAACCCTTCTGCAACCGGCAGCCTATATGTGATAAATGTACCTTTTTAGATAGGCCTATGTTTCTGCTTATGTTAGAcatttttgtatgcattttgtgagtcaacttgtctatatgtagatacatgcagcttctcttctatCATTACTTGTTGctctagaagactaaataaacccttgctcaccgGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811246 lncRNA downstream 36960 46264380 ~ 46272772 (-) True G713667
TU810845 lncRNA downstream 63303 46246065 ~ 46246429 (-) True G713293
TU810839 lncRNA downstream 67675 46241856 ~ 46242057 (-) True G713287
TU810763 lncRNA downstream 172794 46136731 ~ 46136938 (-) True G713211
TU810754 lncRNA downstream 188001 46121282 ~ 46121731 (-) True G713202
TU811275 lncRNA upstream 28974 46354659 ~ 46424529 (-) True G713694
TU811319 lncRNA upstream 39740 46365425 ~ 46376646 (-) True G713736
TU811324 lncRNA upstream 55881 46381566 ~ 46387729 (-) True G713738
TU811328 lncRNA upstream 73331 46399016 ~ 46406912 (-) False G713742
TU811330 lncRNA upstream 73331 46399016 ~ 46406912 (-) False G713742
XM_021612637.2 mRNA downstream 68295 46163653 ~ 46241437 (-) True tmeff1a
XM_021612636.2 mRNA downstream 68297 46163653 ~ 46241435 (-) False tmeff1a
XM_021612635.2 mRNA downstream 175744 46122744 ~ 46133988 (-) True cavin4a
XM_021612634.2 mRNA downstream 235686 46061743 ~ 46074046 (-) False ift57
XM_036985501.1 mRNA upstream 63257 46388942 ~ 46395118 (-) False LOC110529956
XM_036985502.1 mRNA upstream 63257 46388942 ~ 46395118 (-) True LOC110529956
XM_021612647.2 mRNA upstream 82048 46407733 ~ 46417579 (-) True dusp28
XM_021612654.2 mRNA upstream 136940 46462625 ~ 46463692 (-) True sft2d3
XM_021612657.2 mRNA upstream 201965 46527650 ~ 46556891 (-) True si:ch1073-184j22.1
TU810338 other downstream 851484 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1770228 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3138650 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3589033 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 6350119 39956961 ~ 39959613 (-) True slc22a16
TU811888 other upstream 725782 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 852739 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1963257 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2216606 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 2434227 48759912 ~ 48761163 (-) True G716463

Expression Profile