RNA id: XM_021612654.2


Basic Information

Item Value
RNA id XM_021612654.2
length 1068
RNA type mRNA
GC content 0.48
exon number 1
gene id sft2d3
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46462625 ~ 46463692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAAATTGACATGGATTCAAATTTAATATTTTTAATGAGTTATCCACAATGTAAACGTGACGTCATCATTTGTGCTGCAGGCAGAATACTCAGTCGCACATAAAGGAAATTTGTCAACATACAAGTCGACGAGAAGTTATGGCGGAATTGAATCGAAGTCTTCAAGAATATCTGGCCCAGTCTAAAGGTGGTGCCAAGACGATATCTCAGTCCAGCTCAAGTACGACCATAGATATCGAATCCACTTCAGTAGCTGGGAGCTGGTTCGGTAGCTGGTCGAGCCCGTTCTCTGGTTCCAGCAGTCGCGGCGGAGGTTCGACAGGCCAAGGGTTAGGCAGCGGCTATTCCTGGCCGTGGTCTACGGAGCCAGACCCATGTCTTCCGGGAATGAGTCGCTCGCAACGACTGGTCGCTTTCGGAGTGTGTATTGCGTTCTCAGCGTTGTGCTTTGGACTGTCCGCCCTGTACGCACCCTTGTTGCTGTTGTATGCGCGCAAATTTGCCCTTCTCTGGTCTCTCGGCTCTCTTTTCGCGATTCTGGGAGCAGCCATACTGCGGGGACCCAGCAAGCTTATAGCGAGGCCGACTCCCAGCGCGTTGGTGTATCTGTGCTCTATTGGAGGTACACTTTATGCAGCGCTCAGCCTTCACAGCACCATACTTACCGCCGTCGGAGCCATTGTCCAGGTTGCCGTAATCGTTGGGTACATCGTCTCTTTGCTGCCGGGCGGTAGCGCAGGAATTCGATTCATGGGAGGGATGGCAGTGTCTGCTATCAAAAGGACTGTCACGGGTAAAACGATGCCAATTTAACCACCACTTCAATTAATCCGAACGGACTTTTGCCCTCTTGTGAATAGGACTGAATGACTAGTTTAGAGTGCACTAGCAAAACAATGTCATAATGTGGCCCATGACAATGGTGTTAATTCCTTTTCTCTTGTAATTTACTTCTGATGGACCAACATGCCCAGTAATATATCAGAATAAGACTCAAATGGAACAGACCAGCAGAGAACTATGAAGCCTCATGTCTTTTTTTCAACTAATAAAATGTACAATCTTA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811358 lncRNA downstream 514 46460690 ~ 46462111 (-) True G713766
TU811275 lncRNA downstream 38096 46354659 ~ 46424529 (-) True G713694
TU811328 lncRNA downstream 55713 46399016 ~ 46406912 (-) False G713742
TU811330 lncRNA downstream 55713 46399016 ~ 46406912 (-) False G713742
TU811331 lncRNA downstream 55713 46399016 ~ 46406912 (-) False G713742
TU811363 lncRNA upstream 292 46463984 ~ 46464406 (-) True G713771
TU811364 lncRNA upstream 1076 46464768 ~ 46465308 (-) True G713772
TU811365 lncRNA upstream 1930 46465622 ~ 46466193 (-) True G713773
TU811366 lncRNA upstream 2924 46466616 ~ 46466827 (-) True G713774
TU811367 lncRNA upstream 3950 46467642 ~ 46468423 (-) True G713775
XM_021612647.2 mRNA downstream 45046 46407733 ~ 46417579 (-) True dusp28
XM_036985501.1 mRNA downstream 67507 46388942 ~ 46395118 (-) False LOC110529956
XM_036985502.1 mRNA downstream 67507 46388942 ~ 46395118 (-) True LOC110529956
XM_021612641.2 mRNA downstream 136940 46309732 ~ 46325685 (-) False crfb16
XM_036985500.1 mRNA downstream 136940 46309732 ~ 46325685 (-) False crfb16
XM_021612657.2 mRNA upstream 63958 46527650 ~ 46556891 (-) True si:ch1073-184j22.1
XM_036985506.1 mRNA upstream 188136 46651828 ~ 46760034 (-) False pex5lb
XM_021612661.2 mRNA upstream 188136 46651828 ~ 46803168 (-) False pex5lb
XM_036985507.1 mRNA upstream 188136 46651828 ~ 46803168 (-) False pex5lb
XM_036985508.1 mRNA upstream 188136 46651828 ~ 46803168 (-) False pex5lb
TU811283 other downstream 136944 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1004377 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1923121 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3291543 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3741926 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 587775 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 714732 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1825250 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 2078599 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 2296220 48759912 ~ 48761163 (-) True G716463

Expression Profile