RNA id: XM_021612657.2



Basic Information


Item Value
RNA id XM_021612657.2
length 2242
RNA type mRNA
GC content 0.49
exon number 8
gene id si:ch1073-184j22.1
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46527650 ~ 46556891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGAAAATGattcagagagggagggaatgaaagAGACCACAAACAAAGAACGGAGACAGGGAAAGAACACAGGGAGGTGGGagcgagataaagagagacagaatgacTCTGGGCAGACAAGAGGAACAGGGCTGCAGCTGGAAAGAGTGACAGCTCAAGATCAAGAGGCtgatagagtgaaggaggagcccactaaggagggagggaggaggaggagtcttcAACAATACGAAGATAAAAAAAAATCGCTTTGGAGAGAGAAAGATCTACAAACAGAACCCGTCCAAACACAGCCATTACACTGGCGCAGCGTGTTGAGCCCAAGGAATATGGATTGAAGTCAAGACAAGTTGGAAATTTATCTGGGAACAGGACACCCTAATTAAACCAACAACCAAAGGAACAACTTCTATtgcgaagagagggagagaaagacagacagtgagagggagcaagagaagagagagcacaGGGCAGTGAACGAGTAAGGGAAAAAGAGTGGCTAGACAGAGGAGGGCAAAAGAAGAGAATTAATACCACCCACTGTGCCAATACCACACACAGAGTAAAATTGttacgcacatacacacattcaaAGACAGAAAACCTGCCTGtgccacacacacagtatttatGTCTCACACATTGGCTATACCACACACACCAAATTTCTCAAACAAGTTTGCATGCAACATATGCAGTAAGTATTCGACACGCTGAAATCAAAACGTTTATATCAACAGAAACGGAGAGAAACAAAGAAGAtaaagaggcatggagagacattAAAGCGTCATATGGGTTGGTATTACTACGCACAGAGTGACATAGACAGACAAAACGCAACATAGTGGCATCACGGGGCCTCCACAGGAGCAGGAACTCTTTGAAAACTAACCTGAGGAACTATACTGCCAACTTAACCCCCAAAAATAATTACCACAGAACTGAAGGCCGGTGATTCTTCTAAACTTTGACTACAATCCTATTACGATTAACCAGCAGCAAACCAGAGCAACTGTATTGAGGATCTATCATCTCCGTAGTATGGGTGCCTAAGACAGGCGAGCTGAAGAGCTGTGTCCCTGGAAGGAGCACCACCAGCCCTCCAGCCCTTCCCCACCATGCTGCCCCATACGGCCCAGGGCAGGGGCACCTTAAGCAGGGTACGAGGGCTCCTGCTGCTGCCCCTCCTAATGGTGCTGCTGGTGACTTTTTGTGCTGCACAGAGCGAAAAGAGTCAGGAGAACCAGGGAGAGAATAACACTGGCAGTACGGAGAGCCCGGAGACTGTCTCCTCAGATGTGGCCATCGTCAGTCCTCGTAACTCCTGGCTCGTCTTCAGACACAACTCCAACAAAGGAGAGAACAAGAAGACCAAGCCCCCAAAGAGGGCATCTAAGcaTGGTCTACCGGGCCCCCCCGGACCACCAGGCCCTCAAGGGCCACCCGGCCCCCCCGCCCCCCTGTTACCTCAGCAGGAAGAGCTGATGCAGGAGTTCCAGCTACGACTGAGAGaGATGGCTGGTGGACCCTGTCTGCTCTGTGAGCGACCTCCCCGTGTGGCCACCGCCTTCCACTGCCGCCTGCACCACCCACTCACCGTGCCACGCCGCAGTCTGCTAGAGCTGCAGCCATTCAGCAGTGTCTCGGACACTGAGCAGAGCCTCCAGAGGGGCCAGGGCTTCAACTCTAGCAGTGGCCGCTACACGGCTCCCGTCTCCGGGTTCTACCAACTCACCGCCAGCCTTCTCATAGagcCCAATGAGAGGTCACAAGCCAGGATGAAGGATAGTGTGAAGGCTTCCATCTGCATTGAGTCCCTATGCCAGAGCAATGTGTCTCTGGATTCGGTGACAGGGGTGGGTAGTTCAGGAGTCTTCAGCATCTTACTGACAGGAACCCTTTACATACAGGCGGGGGAGTATGTGTCCATTTTCGTCGACAACGGAACAGGCTCAGCACTCACAGTCCTCCAGGATACTTTGTTTTCCGGGATACTCCTGGGAGTGTGAACACAGTAAAAcaaatgatacacacacacacccatagactgAAATGAACAAACATATTAAaccacgtacagtaccagtcagaagtttggacacacctaatcattcaagggttttcccttatttttttatattttctacattgtagaataataattaagacatcaaaactgtgaaatagcacacatggaatcatgtagcaaccaaaaaagtgtttaaagcaaattaaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU811396 lncRNA downstream 967 46524775 ~ 46526683 (-) True G713804
TU811386 lncRNA downstream 35947 46491362 ~ 46491703 (-) True G713794
TU811378 lncRNA downstream 44833 46482596 ~ 46482817 (-) True G713786
TU811371 lncRNA downstream 55969 46471478 ~ 46471681 (-) True G713779
TU811370 lncRNA downstream 56365 46471083 ~ 46471285 (-) True G713778
TU811443 lncRNA upstream 17895 46574786 ~ 46575007 (-) True G713848
TU811446 lncRNA upstream 20400 46577291 ~ 46577500 (-) True G713851
TU811467 lncRNA upstream 37502 46594393 ~ 46595176 (-) True G713869
TU811470 lncRNA upstream 39588 46596479 ~ 46607316 (-) True G713870
TU811484 lncRNA upstream 69718 46626609 ~ 46627141 (-) True G713884
XM_021612654.2 mRNA downstream 63958 46462625 ~ 46463692 (-) True sft2d3
XM_021612647.2 mRNA downstream 110071 46407733 ~ 46417579 (-) True dusp28
XM_036985501.1 mRNA downstream 132532 46388942 ~ 46395118 (-) False LOC110529956
XM_036985502.1 mRNA downstream 132532 46388942 ~ 46395118 (-) True LOC110529956
XM_021612641.2 mRNA downstream 201965 46309732 ~ 46325685 (-) False crfb16
XM_036985506.1 mRNA upstream 94937 46651828 ~ 46760034 (-) False pex5lb
XM_021612661.2 mRNA upstream 94937 46651828 ~ 46803168 (-) False pex5lb
XM_036985507.1 mRNA upstream 94937 46651828 ~ 46803168 (-) False pex5lb
XM_036985508.1 mRNA upstream 94937 46651828 ~ 46803168 (-) False pex5lb
XM_036985505.1 mRNA upstream 94937 46651828 ~ 46803169 (-) True pex5lb
TU811283 other downstream 201969 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1069402 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 1988146 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3356568 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3806951 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 494576 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 621533 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1732051 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1985400 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 2203021 48759912 ~ 48761163 (-) True G716463

Expression Profile


XM_021612657.2 Expression in all Baseline Samples

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XM_021612657.2 Expression in each Bioproject

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XM_021612657.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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