RNA id: XM_021612670.2


Basic Information

Item Value
RNA id XM_021612670.2
length 2266
RNA type mRNA
GC content 0.50
exon number 12
gene id dnajc1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47027194 ~ 47035362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCGGAAAAGGTAAAGAGCAGaggattgtgggaaatgtagCAAATTGTTAGCATATGCAGCAGCCAGTTGTAAGGGTAGTAGCTAGACACGTTAGCTGTATCACAGCagaatttatttatatatatttcgcGGTGCAATATTACCGCCAACATTGTCAAAGCCTCATAATGACCCCAGCTTCATTGGGCCTCTCGTTTATTCTTGCCGTCAGTATTTTTATTGCAAACCCAAGTCCCTCTCATGCTTGGGATTCAGACCTTGAGCTGTTCGACCTGGTGGAGGAAATTCAACAAAACTTTTACGAATTCCTGTCTGTTGAACAGGATGCCTCGTCAGTGGACATCAGAAAGGCCTATCGCAGGCTGTCGCTCACTTTGCATCCCGACAAGAACAAAGACGAGAATGCTGAAACCCAATTCAGACAGTTGGTGGCCATCTATGAAGTACTgaaagatgaagagaggagagagagGTATAATGATGTCCTGGTCAACGGGCTACCGGACTGGAGGCAGCCAGTGTTTTACTACAGGCGGGTGAGGAAGATGAGCAATGGGGAGCTGGGCTTCCTGCTCTTCCTCATCCTCACTGTGTGCCACTACGCAGTCATCTGGTCCATCTACCTGGAGAAGCAGCTGGATGAACTTCTGAGCAAGAAGaaaaaggagaagaaaaaaaagatgaGTAGCAAGAGTGCTGAAGAATCGCGGTTTGTTGGACAGGATAAAATTGAGAAGTCACATGACAAACCTCATTGGCAGGATATCCTGCCACTCAAGCTGAGCATCTGGCTGTATCTCTCTGTCAAGTCCCTGCCCCATGTCATCCAGGATGCCAAACAGTATTACGAAGATTATAAGGAGATGAaaatcagagagaaagaggaagcgGAAGCCATGGCACTGGAAGAACAGGAAGCTACAACAATAAAAGAGAAACGACCCAAAGTGAAGAAGCCGAAGTTTGAGTTCCCCGTTTACGAGCCTTCACTCAAGGTCGCAGACAGCGCATACTCACCAGTATACGACCAGGGAACGTCCATCGAGGAGATCGAAGACCAGATGGATGACTGGCTAGAGGATAAGAAGTCTCAGAAGAAAAAGGCACCTGAGTGGTCAGAAGAGGACATCACTCTTCTGACAAGGAGTATGGCCAAGTTCCCTGGGGGAACACCTGGTCGCTGGGAGAAGATCGCACACGAACTAGGAAGATCGGTGACAGATGTTACTGCAAAAGTCAAACAAGTTAAAGACGGTCAAACCAACACATCAGGGCTGGTGAAGCTCTCGGAGCTCAAGGCTCAGGGCAGCGCAGCACTCTCAGGAAAGGGATCCAAAGCTGGGGCCGGAGCTGTACCCGACAGTGTCATGACCCAGCGAGAACACCCGCAACCCCAGCCTCTGGCAGCAGCCACAGCAGAGTGGATGGAGCCCAGTGGAGGAGGGGATGAAGGAGAGGGCATCCaagcaggaggtgtcaggaggagaggcagaaagactgggggtggaggggtggggggcGAGGAGAAAGCCAAGGGGCGCAGACAGAGGGACTTCGACCCCACAGTTGCCATCGAGGACAGCGAAGAGGAGCAGAGTCCGCCCACCTCCTCGGTCCCACAACCCTCCAAGGAGAAGGCTGCGGCGACTGACGACATCTGGACCCAGAACCAGCAGAAGCTTCTGGAGCTGGCCCTGCAGCAGTACCCGCGAGGCACCACGGAACGCTGGGACAGGATTGCCAAGGTGGTGCCCGGGAAGAGCAAGGAGGAGTGTATGATACGTTACAAACTTTTGGCTGAGCTGGTGCTGAAAAGGAAGCAGGCCAAGAGCTGACTCCGCCAAGGACGGCCATCTTGAAATCACTTTCTGGCTCCTAGTCCCTTTTCCTAGCTACTATCCACTTCAATGTGATCTGAAAAGCCTGGATAGATGAAGGCAATATAGTGAAAAAATCCACATTGCATATTGTTGGGACATATTGCTTTTACCTGTCCAGTTCCTTCAGATCTGTGaacaggacagggagaggagcagggggaagGGCCATCCTCTCatgtctgtcatgtgccttagcTCCACCCAAAGCATGCCATCCAGCCTCTGAACTGCTATGTGAGGATTCAAAGCACCAACAAAAAACGTCTATACCTTTTTTTGTACTTCAATATGTTTTGACTTCTGCTTTGCGCTGTCATTTGAAATCACACATGTACTGAATATAACTTCTTTGAGATGAGGAAATaaactgttttatttattta

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K09521 DNAJC1; DnaJ homolog subfamily C member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811880 lncRNA downstream 11383 47015599 ~ 47015811 (-) True G714271
TU811871 lncRNA downstream 16925 47003967 ~ 47010269 (-) True G714262
TU811875 lncRNA downstream 25509 47001045 ~ 47001685 (-) True G714266
TU811874 lncRNA downstream 26495 47000483 ~ 47000699 (-) True G714265
TU811872 lncRNA downstream 28550 46998395 ~ 46998644 (-) True G714263
TU811886 lncRNA upstream 665 47036027 ~ 47036317 (-) True G714276
TU811893 lncRNA upstream 9342 47044704 ~ 47045355 (-) False G714279
TU811892 lncRNA upstream 9400 47044762 ~ 47045496 (-) True G714279
TU811904 lncRNA upstream 34214 47069576 ~ 47069788 (-) True G714290
TU811910 lncRNA upstream 40498 47075860 ~ 47076089 (-) True G714296
XM_021612671.2 mRNA downstream 119 47015885 ~ 47027075 (-) False nebl
XR_002474465.2 mRNA downstream 119 47017536 ~ 47027075 (-) True nebl
XM_036985505.1 mRNA downstream 224025 46651828 ~ 46803169 (-) True pex5lb
XM_021612661.2 mRNA downstream 224026 46651828 ~ 46803168 (-) False pex5lb
XM_036985507.1 mRNA downstream 224026 46651828 ~ 46803168 (-) False pex5lb
XM_021612673.2 mRNA upstream 15711 47051073 ~ 47057707 (-) False LOC110529973
XM_021612672.2 mRNA upstream 15711 47051073 ~ 47067973 (-) False LOC110529973
XM_021612689.2 mRNA upstream 194725 47230087 ~ 47260839 (-) False LOC110529976
XM_021612686.2 mRNA upstream 194725 47230087 ~ 47260840 (-) False LOC110529976
XM_021612688.2 mRNA upstream 194725 47230087 ~ 47260840 (-) False LOC110529976
TU811283 other downstream 701513 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1568946 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2487690 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3856112 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 4306495 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 16105 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 143062 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1253580 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1506929 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1724550 48759912 ~ 48761163 (-) True G716463

Expression Profile