RNA id: XM_021612692.2


Basic Information

Item Value
RNA id XM_021612692.2
length 2426
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110529977
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47283739 ~ 47295308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGTTATTAAAATGCGAAAGTTGGTCTTGAAAGACAACTCGGCGTTTCATTGGTTGGTGAGCCGGCATTGGGACACGCGACAACGAGCTCATTCTTTCTTGTGAGTTTCCAACATCGTCGCAGCCGCGGGTGAACAGGAAAAAGACCGTTTAATTTTGTCGAGGTCAGCAGCAGCCATGCCTTCAGACCTGGCCAAGAAGAAGGCGCAGAAGAAGAAGGAAGCCGCCAAATCCCGCCagaagacaaaaaaaactgaggatggagagggagagaaaccagagGAAGGCCAGGAGAATGGAGCCATAAGCAACGGTGTGGAAAGCCTGACCAAGGAGATGGATGAGTTTGAGCTGAAGAAGACTGAGGCGCGGGCGGTGACTGGCGTGCTGGCTTCGCACCCCAACAGCACAGATGTGCACGTCACCAGCATGTCGCTCACCTTCCATGGGCAGGAGCTGCTGCAGGACACCAGCTTGGAGCTCAACTCGGGCCGCCGCTACGGCCTCATTGGCCTCAATGGCACTGGTAAATCCATGTTGCTGGCAGCCATTGGCCACCGTGAGGTACCTATCCCAGAGCACATTGACATCTACCACCTGACCCGTGAGATGTCTCCCAGTGAGAAGACTGCCCTGCAGTGTGTCATGGAGGTGGATGCGGAAAGGATCCATCTGGAGAAGGAGGCAGAGCGCCTGGCATCCGAGGACTCCGAGTGTGAGAAGCTGATGGAGCTTTATGAGCGCCTGGAGGAGCTGGACGCAGATAAGGCTGAGGTGCGGGCCTCCCAGATCCTCCACGGCCTGGGCTTTACTGCCTCCATGCAGCAGAAGAAGCTTAAGGACTTCAGCGGAGGCTGGAGAATGCGCGTTGCTCTGGCCAGGGCCCTGTTCTTGAAGCCGTTCATGTTGCTGCTGGATGAGCCCACCAACCACTTGGACCTGGATGCCTGTGTGTGGCTGGAGGAAGAGCTTAGCCAATTCAAACGTATTCTGGTCCTGATCTCCCATTCGCAAGATTTCCTCAACGGCGTGTGCACCAACATCATGCACTTGCACGAACGCAAGCTGAAATACTACACGGGCAACTACGACCAGTACATTAAGACCAGGGAGGAGTTGGAAGAGAACCAGATGAAGCGGTTCAATTGGGAGCAGGACCAGATCAAACACATGAAGAACTACATAGCCCGGTTTGGGCACGGCTCAGCCAAGCTGGCTCGTCAAGCCCAGAGTAAAGAGAAGACTCTGCAGAAGATGGTGGCCTCGGGCCTGACTGAGAGTGTTAAGAATGACCAAACCCTGTCATTTTGTTTTCCTCCCTGTGGGAAGATTCCCCCTCCTGTCATCATGGTCCAAAATGTCAGCTTCAAGTACTCTGATGACCAGCCCCATATATACAAGAACCTTGAGTTCGGTATCGACCTCGACACCCGAGTGGCCCTTGTGGGGCCCAACGGGGCCGGGAAGTCCACCCTGCTTAAACTCCTCATGGGAGAGCTCCTCCCCACTGATGGTATGATCCGCAAGAACTCCCACGTCAAGATTGGCAGATATCACCAGCATCTAACAGAGCAGCTGGAACTTGACCTCTCCCCCCTGGATTACATGATGAAGTGTTACCCAGAGatcaaggagagggaggagatgaggaagatCATTGGCCGCTATGGGCTGACAGGCAAACAGCAGGTGAACCCCATTAGAAACTTGTCCGACGGGCAGAAGTGCCGGGTGTGCTTTGCCTGGCTGGCCGGGCAGAACGCCCACATGCTCTTCTTGGACGAGCCCACCAATCACTTAGATATCGAGACCATCGATGCCCTGGCCGACGCCATCAACGAGTACGAGGGCGGCATGATGCTGGTTAGCCATGACTTCAGGCTCATCCAGCAGGTGGCCCAGGAGATCTGGGTGTGCGAAAAGCAAACCATCACCAAATGGAACCGGGACATCTTGGCTTACAAAGACCATTTGAAAAAGAAGATCGACAAAAATTCTCATGGTGTATAGAAAATTGAAATACCTCCCCAGATTCAAGACTGCACTGTCCCAAGACTGTGGACTCCCATTTTTCCCATTCCCTCTTCACGTGGCTATATAACTCGACGCATGTTACTCCATTTCAAGATGCCCAATTCCTCCTGCTTTTAATGCCTCTTTATAGGCTGCTGGAAGGTTGTGGTGCGACCTAGTTGCCTTCCAttgctactcccttcacaggcATACTTATGGTATCTTGATTtctcaattaaaataaataatttatccATCAATGTGGTAGAGAACGTGTGCATTTTTCCACAGTTCAGATATAGTAGGACGTTAGCCGCCTGTACCAATTTATTTCCTTTTACTCTAAAATAGCTTTTTATTATTTAACTGTACCTGCAATAATGGGATTGTATGAATAAAGGAGCAAAATAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812329 lncRNA downstream 50251 47230125 ~ 47233488 (-) True LOC110529976
TU812331 lncRNA downstream 54446 47228767 ~ 47229293 (-) True G714689
TU812058 lncRNA downstream 75394 47207979 ~ 47208345 (-) True G714440
TU812053 lncRNA downstream 80858 47202652 ~ 47202881 (-) True G714435
TU812048 lncRNA downstream 85395 47197656 ~ 47198344 (-) True G714430
TU812411 lncRNA upstream 56890 47352193 ~ 47388487 (-) True G714764
TU812473 lncRNA upstream 156154 47451457 ~ 47451848 (-) True G714816
TU812480 lncRNA upstream 170522 47465825 ~ 47466150 (-) True G714823
TU812512 lncRNA upstream 226477 47521780 ~ 47522040 (-) True G714855
TU812533 lncRNA upstream 237696 47532999 ~ 47533347 (-) True G714876
XM_021612690.2 mRNA downstream 22887 47230087 ~ 47260852 (-) False LOC110529976
XM_021612685.2 mRNA downstream 22895 47230087 ~ 47260844 (-) False LOC110529976
XM_021612687.2 mRNA downstream 22895 47230087 ~ 47260844 (-) False LOC110529976
XM_036985515.1 mRNA downstream 22895 47230087 ~ 47260844 (-) False LOC110529976
XM_021612686.2 mRNA downstream 22899 47230087 ~ 47260840 (-) False LOC110529976
XM_036985517.1 mRNA upstream 2992 47298295 ~ 47303900 (-) False LOC110529978
XM_036985518.1 mRNA upstream 2992 47298295 ~ 47303919 (-) True LOC110529978
XM_021612696.2 mRNA upstream 102480 47397783 ~ 47439942 (-) False LOC110529981
XM_021612697.2 mRNA upstream 102480 47397783 ~ 47439942 (-) False LOC110529981
XR_005052883.1 mRNA upstream 102480 47397783 ~ 47439942 (-) False LOC110529981
TU812043 other downstream 105003 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 226079 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 958058 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1825491 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2744235 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 993639 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1246988 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1464609 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1486818 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1493218 48788521 ~ 48788962 (-) True G716488

Expression Profile