RNA id: XR_002474329.2



Basic Information


Item Value
RNA id XR_002474329.2
length 735
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110529117
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47655052 ~ 47656068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ataggctgtcattctaaataagaatgtgttcttaactgacttgcctaattaaataaaggttgaaaaaaatctaaatgtcatgttttttctttgtcatgtcTCTGGAAGAACAATCCGCATAACGCCTGTGTACTGGATCTGATGGTTAGTCAGCTGAGATGGCAGATTTTGAAGATTCAGCTGCAAATCTGCATTGGACTGAAAGAGTGGAATAAGCCGTCGGACACCCCAGACAAGAAAGAACGGGGCATCAAAAAGTGAAGGCGGTCTTGCCAGAGACAGGATGTGGTCAGTCGGTCAAAAGAAATCTGCTGAGGTGATGCAGCAACTTGCGAAGGCAACTGAAGACATGATGTCTGATGTGGAGACAGACCCAGAGGATACTGATGCATTTTTCATAACCTCCCCACCATGCCTCTCCCCTGAGTTTGAGGACCTGATTGTGTCAGCAGACCGGATAAAAGGCCAAGCGTGCTTATGGGGAGAAAAGGCTCCTTCAGAACAAAAACCAGAGCAACCATCCACGTCCaccgcagccctatccagaacaTCTGATTGTGCAATAGACCACAGACAATCACCTGCAAAGGTCCTCTGCACCCACATTACTAAGAAATTGGCATAGTTCAAGCATACCatcacagttgtgaagagggcacgacagcacCTCTTTTccgtcaggaggctgaaaagatttgccatgggccctcagatcctcaaagttcgacagctgca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU812533 lncRNA downstream 121705 47532999 ~ 47533347 (-) True G714876
TU812512 lncRNA downstream 133012 47521780 ~ 47522040 (-) True G714855
TU812480 lncRNA downstream 188902 47465825 ~ 47466150 (-) True G714823
TU812473 lncRNA downstream 203204 47451457 ~ 47451848 (-) True G714816
TU812411 lncRNA downstream 266565 47352193 ~ 47388487 (-) True G714764
TU812708 lncRNA upstream 11901 47667969 ~ 47673891 (-) True G715048
TU812739 lncRNA upstream 41519 47697587 ~ 47697872 (-) True G715079
TU812746 lncRNA upstream 48151 47704219 ~ 47704470 (-) True G715083
TU812750 lncRNA upstream 51285 47707353 ~ 47707584 (-) True G715087
TU812751 lncRNA upstream 51579 47707647 ~ 47707953 (-) True G715088
XM_021612696.2 mRNA downstream 215110 47397783 ~ 47439942 (-) False LOC110529981
XM_021612697.2 mRNA downstream 215110 47397783 ~ 47439942 (-) False LOC110529981
XR_005052883.1 mRNA downstream 215110 47397783 ~ 47439942 (-) False LOC110529981
XR_005052884.1 mRNA downstream 215110 47397783 ~ 47439942 (-) False LOC110529981
XR_005052885.1 mRNA downstream 215110 47397783 ~ 47439942 (-) False LOC110529981
XM_021612703.2 mRNA upstream 70722 47726790 ~ 47894176 (-) False LOC110529987
XM_021612708.2 mRNA upstream 673616 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 699936 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 699936 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 699936 48356004 ~ 48486048 (-) False dlg1l
TU812043 other downstream 476316 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 597392 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1329371 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2196804 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3115548 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 632874 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 886223 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1103844 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1126053 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1132453 48788521 ~ 48788962 (-) True G716488

Expression Profile


XR_002474329.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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XR_002474329.2 Expression in each Bioproject

Bar chart with 7 bars.
XR_002474329.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.