RNA id: XM_021612703.2


Basic Information

Item Value
RNA id XM_021612703.2
length 7458
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110529987
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47726790 ~ 47894176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCATGTTTGATGACTGTTAGTTATATTTTTCTCTAACACTTCCCACAGCATGCGGAGCCATCATCGGTCTGCGTCCCGCTGCAGCTGTGACTTCTCAATGGAGCTCATTGTAGCGACAACACGTAGTTGGAGCTAAGGAGCTGAGCAGCGCAGTTATTGCAATCACGTTGAGCGCGCTGCTGTCTGTTGCAGTGGCATCGTCctgactgtgtgagagaggaaGACATCAAACGACCGTAGTGTTAAGGCTCCAATTATTCATTGTGCTCAGAAGACCATTCTGCTGCAGTAGCCGTTTTCTGACTCCTTGACAACCAACAATAACTATCCTACGTCTGTCTGCTGAAGGATATACTTGCTCATTAAACAAACAACACCTGCCCTGGGGTGTTGCTTCTGTTGAACCCCAAAATCCACCCTGTGGATGGTTGACAACATTTCTTATTGAGTCTTTCGCAGTTCATTTTCACCCAAAAAATGTGTATCGTAATGATGAGACTGAACTGTTCCCCCATGTGGAGTGTGGTTAGCCTTTTGACTTTGTTGCTATTACCACTTTGGGAGATGGGCTGCTCTGGCCTGAGCTTTAACTCAGTGCCCCTGCCGCCGGTCGGGACATACCAAAGAAGCTGCGAAGGAGGGGCACACCACAGGCAGAGGCGCAGTTGGGTGTGGAATCAGTTCTTCGTGCTGGAGGAGTACACAGGGGACGAGCCACTCTACGTGGGCAAGCTGCACTCGGATGTGGATAAGGGTGAAGGGCAGGTGAAGTACGTGCTCAATGGCCAGGGAGCTACCTCCATATTCACCATTGACGAGAACACTGGTGATATCCATGCCACCAAGCGTCTGGATCGCGAGGAGCAGGCTTACTACACACTCCGGGCTCAGGCCAGGAATCGCGAAAACAACCTGCCCGTGGAGCCTGAGTCCGAGTTTGTCATCAAGGTCCAGGATATTAATGACAATGAGCCCAAGTTCCTGAATGGGCCCTACTCAGCCAGGGTCCCCGAGATGTCCCCAGTGGGCACATCTGTGGTGACGGTGGTGGCAACAGATGCAGATGACCCCACAtatggaaacagtgccagggtgATCTACAGTATCCTCGAGGGCCAGCCCTACTTCTCTGTGGAACCAAAGACCGGCGTGGTCAAGACAGCTCTGCCCAATATGGACCGTGAGGCACGGGACCAGTATCTGTTGGTCATCCAGGCCAAGGACATGGTGGGCCAGATGGGAGGACTCTCTGGGACCACCTCCGTCATGGTGACTCTCACTGACGTCAACGACAACCCACCACACTTCTCTCGCAaaAGTTATCAATTCAGCATGTCTGAGTCCCTGCCAGTGGCCTCAGTGGTAGCCAAGATAAAGACGCTAGACTCGGATGTGGGGCCCAATGCTGAGATGGAGTACAggattgtggatggggatggccTCGGGTTGTTCCGAATCACCCccgacagagacacacaggaagGCCACATCACTCTGCAAAAGGGCCTGGACTTTGAGACCAAGTCGAGCTACACCCTACGTGTCGAGGTGTCCAATAGAAACATCGACCTGCGATTCCTCTCCCTTGGCCCATTTAGCGACACAGCTACAGTGCGCCTCATCGTGGAGAACGTGGACGAGCCGCCTGTCTTCTCCTTGCCGCTCAGCAAGATGTTAATATCGGAGGCAGCAAAGGTGGGCACCACCATCGGGACGGTGTCCGCACATGACCCCGATTCCACCAACAGTCCCATCAGGTACTCAATAGACCGCAACACCGACTTGGAGCGCTTCTTCAACATTGACGCCACCACCGGTGTCATCAGCACTGCCAAGCCGCTGGACAGAGAAGTCAACGCCATACATAACATCACCATCTTCGCCATGGAGAGCTTGCACCCATTACAAGTGGGAAAGTGCATAATTCTGATCACAGTGATGGACATCAATGACAATGCACCCGTCTTCGCCATCGAGTACGAGACCTACCTTTGTGAGAGTGCCAGACCTGGACAGGTCATTGAGACCATCAGCGCAATGGACAGAGACGAACCTCAGAGTGGACACCGCTTCTTCTTCTCCCTCACTGCAGAGGCTGCTGGGAACCTCAACTTCACCCTGAGAGACAACAAAGACAACACCGCCTCTGTGCTGACCATGCGAGGGGGTTTCCAGCGTCACGACCAGACTATGTACCGCCTCCCTGTCCTCATCATGGATGGCGGGAGCCCTGCCCTCAGCAGCACCAACACCCTGTCCATCCGGGTGTGCGACTGTGACCCCGATGGAGCTCCCCAGTCATGTGGGAGTGAAGCCTCCATGCTCTCAGCAGGCCTCAGCACTGGGGCCCTCATCGCCATCCTGGCTTGCATCCTCACACTTCTAGTGCTTGTCCTGTTGATCGTCACCATGCGACGGAGGAAGAAAGAGCCCCTGATCCTGGACGAGGAGCGTGACGTGCGCGAGAACATTGTGCGCTACGACGACGAGGGCGGCGGTGAGGAGGACACAGAGGCCTTCGACATGGTCGCTCTCCGCAACCTGAAACTGGTCCGTGAGAGCGGTGGCAAGACCCGCCGTGATGTCACCCCGGAAGTGCCCAGCCTCTTCTTGTCTTCCCGGCCACCACCAGACAATGGCATCTTCCGCGACTTTATCTGGGACCGGCTGAAGGAGGCCGACGCAGACGCGTCGGCACCACCCTACGACTCGCTGCAGACATATGCCTTCGAGGGTAGTGGCTCAGTCGCAGAGTCCCTCAGCTCACTGGATTCCCTGAGCACGGACTCTGAGCAGAACTACGACTACCTCAGCGACTGGGGGCCGCGATTCAAGAAGCTGGCAGACCTCTACGGCCACAGCGATGACGGTAACCTCTTTGCCTCTTAGCCCTCGGTTGAGCCTGCTAAAATGTTGGCACGGACAATCTAACAAATGAGGGAAGGAAACTGAAGAATATAAAGAAGGATACAAGAAAGCAAATGTGAGATGACGAGAAGAAAATGCTGTACTCGGAGGATATTTGATTGGTGTATATAAATGCatcaatgacggtgagaataacCAATAGGATGTTGGTTTTCCAttcaaaatgttttttgggggactgGCAGTATTTTTCAAAGAATGAACTTTGCGAGAATTTGTTAACTAGATTTAATATGATGGAAATTATGCAAAGCTTAAGACGTTGGGATGGGCTCCAGACCCTTAGAAGGACCTCAACGCACAAATGTCCAGACTTTCTCAAGTCACGTGACATTCAAATGTGACGAAAAGTGAACCAATATCTATGCTCCAGTGTTATTACAACAGTGACATTATCAAGTACTCCCTCATGTCGTGTTCAAATGAAAACAGTGCCACCTTGAACTGGCCCTGTAGTCTGTCACAGGGTTCACTGTGATCTGCAATATTTGTTTCAAATGTATATTTATAGAACAGATTCTCAATTTAACTCCATGTGGATTTTACAGCAGTTTTTTTAACAAACAATGGATTTGATCAATTCAGGCTTACCGTGGTTCATGTTCAGTAGGGATCACTGTAGCAAACTACTTTAAAGCAGAAAACAGAaatgagtgtttcttattggaccagAAGTCTCTGCCCCCTTTCTTCAATTTGGTGCCTAACGAACACGGCAATGATCTCTCAACCATTTAGAGTATCAGAAACAATGCATTCCTATAAATGTATGTAGACACCTGCCAGGGATGTCCCTTGTCACACTGAATGCTTTAAGGGTCACAGTGCCGCTGAAGGGTTTATGAAGTCTCCCTCCATTGATGCAAGGGAACAAACACCTCTCACTTACATTGCTCCGTTAAAACCTTGTCACACAGCAGCATAATACTGGTTTCTAAGAGCAGCAGCGTAACATTGTTCTAAATTGAATGCAGAGTATTGGTATCTCCAACATTCAAAGCTGTTGTGATGTTTTTTGTATCCTATGAGGTGTTCTAGCTGCCATGTTGGTTTAAactgtgtttgttttttaaaatggaaACATAGCTATAGCAGCATGGGAAAAAACAGTTAACAATGTGTTGAAGAACATTACAGCAAAGCTTCGGGCATTTGTAAAAACACCAAGCCAAGGAGAATGTCAATTGCTATTTCACATACAGTGAGTAGAAATATAAATGTATGAAGTCAGATTAGTTTGAAATATAAACTTATCTTGCAAAATAAGAAATATGCATACATCATGCTGCTTAAAACATATTTTGTGAGAGGGAAATGCAAGGAAAGGCAGCTGGGAAAGTTTTGATTGAGAGCTctttaggtttaggtttatttgaacatatTGGTATATATGCAGAAACATACATACAATGCAAtgtcaatacaatataaaacacatGTAAAAGATACATGACAGCCCTTCTGAAGCTGATGACCATATCCTTGGTTTTCTTTTCGTTCACATACAGGCAGTTGGTTTTCCCCATTGGGCCACTGCATATACTGCTACATGTGTTTGGCCAGGTAGCTTGCCAGGGAGCAAAATCTGTGAATGTGAGGATGGATGCTCTTTGGGAGGCTAGAGTCTATGGTGATCATGCATAGCACAAACAGTAGATGAGAGAGCACTCCACCCTGGGGCACTCCAGCTGGGACTGGCTGTGAGTTAGAAAGGCATGTTCTCGACCTCACCGTCTGCTTGCGGTTGTCCAGTTCGCTCTTGATAGAGATCCATAGTGAGCGGGTCAGCCCATGCTCCACTAGAGTGAGTAGGAGATGGCTATGGTTTAGGGTGTCAAATGCTCTGGAAAAGTTAATGAAAGTTGCATAAACATCCTGCTTTGGCACTTCATTTGATGTGTTGTGCCAGAGCAGCCACTGTTGACCTGTGCTTCACAAAGCCATGTTGTGAGGAGTTGATGTTCGGAGCAGTCTCCTTCTACAGCATGTTGTGTTCAACCACTCATAGATTTTTCCCATGGAGCTGAGGAGAGAGATTTTCCTGTAGTCTTGGAGGAAGATGGGGTTGCTCTTTTTAGGCACAGCACAGATGATGGACTTTATCCATTGAGAGGGGGAAGTAGCTGTGTTCCAGAGATGTTGAAGATATCGCACAGTACTGGTGCAAGCTCCATACAGTCGGGCCTGCAGACTTCTGCCCATTCAGCCGCTTCAGAGGGGTTTTGATCTGGCCAATGTTGAAGCTGGGGGGACAGACGTTTGTAAGCTTGTTTTCAACAGCCTCAATTTCAGGGATCATGCATGTTGTACCTTCCCATAAAGAGGAAAGTGGGCCTTGAGAATGTCACATTCCCTCTGAGAATGCTGTTGATTGAGGGCTGAAAGGTTTTCTCTGGTCTCACTTGCACCAATAAGGCTTTTCAATGATTTGTATTAGCCAGCAAAGTTAGACGACTTCAGCTGTTGGACTTCTGCTTGGAAGTACTCTTTCTTGGCATTTTTCACTAGAGCTGCAACATTCTGCTGAAGCGTCTTGTATTCTGCTTTGTCTTGACTGAGCTGAGGCTGAGTCTGTATGTGTGGCCATCCATTGCTTGTCTCTGGTGGTAAGTTAACTTTTTTGATGGAGAGATTACTATTGAGAGTAATATTTTAGGAGAGAGTTAAGTTCATCTGTCTGCTCTTGGCAGTGTTTTGCTGTTTAGACTGATGTGAAACTATCTATATTTAGTGCCATGGAGAGAGCACTTAGGTTGTCAGAGGCACGGTGTTGTTTGTAGATGTACTGAGCTGGTGATTTAGGCCATTCACCTGCTGACCACAATATGGTCTGGTGATCCGACTCACCTCAGTGGTAGATGCTTGGCTTTGGAGTATAGGCCTTTCATGATGGTAAATATAGAGTTTAGCTGATCAGCTCCACATGTAGAGTTTGTTACCACTTGGTTAGGGCCATACCTAGAACAAAGAAAACCATGCTTGAATCTGTTTGTGTCACCCAGAATCACCTGGGAGGGTGTATTTGCGTTGCACATGGTCCAAGCACCGCCCTTGAGACGTCGCCTCTTTAGAAGTTGGGGGTGGGATGTAAATTATATCTGTTATAATACAGTTCAGGCCACGGTGAGGCGTGAGAGTTTCGTCCACAGCCAAAGGCACTCACAACGATTGTCCTCAAGTTCACGTAGTCGTTTGTGCCTGATGTTACTGTCAATGTATAGGGTGATCCCTCCTCCAGAGCTGCAcagctgtttatttattttgtttgatGACGGTTCATACAGTTGATGCTCATTAGTAGGAGAAAACGTTGTACAATAAATGGAAGCAAGACAGTCCTACATATCCTTTTCATGCTATTGTGCTGACTCAAACCATACAATGCTATTCTAACTTAAATCCAACAGGTCTAATGATGTACAATGCAGTTCAAAGGCATTTTTCAAGACTTCACATAAACATCTGCTAAGACCCCCTCATAATCTCTTACATTTTATCTCACAACAATCTTGAGTTATTATCAAATATTTTGAGGCCATAGAAAAATTGTCGAGTTGATTATAAACTTATAATATATGTTGaataatattattatatataataaTTCATTATACTTTTGGCATGAAGTGTTATTTGGGGTGTTTTCACACTTGGTCCCTTTCAGCCAAATCTTTTTAATTCAGTGTGGTTCACTTAATTTTTTGTGCAGTGTGAATTCTCCAAAGGTACTCAGACCCCTCACAAGAGCCCCCCGAAGCTAACCGAACTGAGTTTGTTTCGCTTGAATTTCGCGGTCTGGTTTCTTTTTTTAGGGCAATGTGAACACAAAGCTCTCCATGTTCACTTGTAAATATTTCCACACCACACACTAGGCTACTGCAACACCATTTTCCCTACCATAAACCTTCACGTTAGTGCCACAAAAGAGAGAATATCATGATGTGcaggtgtgctgtttttggaTATTGATTAGCGATTGTCAAGGATGAACATATCTGTGAAGTTTTGTACCAACACGATGTTCAGATTATTGCCATATGTGATCTATAGGCTAAGAAAGCTTCATACACTGTTTATTCGATTGTGGGGTTTGAATAGTGTGAGACGACAACAATATTTGGTGAGAATCACAACATATGGTACAAAATCAATACTAGCTCCTAAAGGGAAAGTACATTGGGTGTACACCACATATTGTTTCAGTCCCGCTTCAAATTATGTTCAGCCTATAAAGActtcataatgccttcataaACACTAAATAAATGTGTTACAAATCATCTATAACCAACCGTATGTCATGCTTTATAGAAtgttcataaatgtggcataactgtgtgatATAACATGTTGAATATTATTATAAACATGTGCTTTGTAAAGGGCTCTGAAGGGTGGCACACACTCTAAAGTGAAGTCGTGTAAGTCCCATTACACCCATTTCGTTCCCAGACACTTCCCTTttttcacatgtgccgaatacaacaggtgtaggtagaccttacagtgaaatgcttacttacaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812778 lncRNA downstream 1455 47725034 ~ 47725335 (-) True G715115
TU812774 lncRNA downstream 3993 47722559 ~ 47722797 (-) True G715111
TU812773 lncRNA downstream 4478 47722069 ~ 47722312 (-) True G715110
TU812770 lncRNA downstream 5616 47720814 ~ 47721174 (-) True G715107
TU812768 lncRNA downstream 6557 47719750 ~ 47720233 (-) True G715105
TU813106 lncRNA upstream 65034 47959210 ~ 47959437 (-) True G715432
TU813112 lncRNA upstream 71228 47965404 ~ 47965620 (-) True G715438
TU813121 lncRNA upstream 80556 47974732 ~ 47974964 (-) True G715447
TU813141 lncRNA upstream 94850 47989026 ~ 47989364 (-) True G715467
TU813238 lncRNA upstream 162992 48057168 ~ 48057388 (-) True G715563
XR_002474329.2 mRNA downstream 70722 47655052 ~ 47656068 (-) True LOC110529117
XR_005052883.1 mRNA downstream 286848 47397783 ~ 47439942 (-) False LOC110529981
XM_021612708.2 mRNA upstream 435508 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 461828 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 461828 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 461828 48356004 ~ 48486048 (-) False dlg1l
XM_021612729.2 mRNA upstream 461828 48356004 ~ 48515295 (-) False dlg1l
TU812043 other downstream 548054 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 669130 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1401109 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2268542 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3187286 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 394766 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 648115 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 865736 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 887945 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 894345 48788521 ~ 48788962 (-) True G716488

Expression Profile