RNA id: TU812943


Basic Information

Item Value
RNA id TU812943
length 454
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC110529987
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47726790 ~ 47894176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAAACCTTGTCACACAGCAGCATAATACTGGTTTCTAAGAGCAGCAGCGTAACATTGTTCTAAATTGAATGCAGAGTATTGGTATCTCCAACATTCAAAGCTGTTGTGATGTTTTTTGTATCCTATGAGGTGTTCTAGCTGCCATGTTGGTTTAAactgtgtttgttttttaaaatggaaACATAGCTATAGCAGCATGGGAAAAAACAGTTAACAATGTGTTGAAGAACATTACAGCAAAGCTTCGGGCATTTGTAAAAACACCAAGCCAAGGAGAATGTCAATTGCTATTTCACATACAGTGAGTAGAAATATAAATGTATGAAGTCAGATTAGTTTGAAATATAAACTTATCTTGCAAAATAAGAAATATGCATACATCATGCTGCTTAAAACATATTTTGTGAGAGGGAAATGCAAGGAAAGGCAGCTGGGAAAGTTTTGATTGAGAG

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812942 lncRNA downstream 1611 47727071 ~ 47728355 (-) False LOC110529987
TU812778 lncRNA downstream 4631 47725034 ~ 47725335 (-) True G715115
TU812774 lncRNA downstream 7169 47722559 ~ 47722797 (-) True G715111
TU812773 lncRNA downstream 7654 47722069 ~ 47722312 (-) True G715110
TU812770 lncRNA downstream 8792 47720814 ~ 47721174 (-) True G715107
TU812960 lncRNA upstream 20661 47751080 ~ 47751725 (-) False G715292
TU812959 lncRNA upstream 20784 47751203 ~ 47751725 (-) True G715292
TU813001 lncRNA upstream 84906 47815325 ~ 47815939 (-) True G715330
TU813006 lncRNA upstream 92679 47823098 ~ 47823383 (-) True G715335
TU813012 lncRNA upstream 98761 47829180 ~ 47871114 (-) True G715340
XR_002474329.2 mRNA downstream 73898 47655052 ~ 47656068 (-) True LOC110529117
XR_005052884.1 mRNA downstream 290024 47397783 ~ 47439942 (-) False LOC110529981
XM_021612708.2 mRNA upstream 599265 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 625585 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 625585 48356004 ~ 48429216 (-) False dlg1l
XM_021612717.2 mRNA upstream 625585 48356004 ~ 48486048 (-) False dlg1l
XM_021612729.2 mRNA upstream 625585 48356004 ~ 48515295 (-) False dlg1l
TU812043 other downstream 551230 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 672306 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1404285 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2271718 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 3190462 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 558523 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 811872 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1029493 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1051702 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1058102 48788521 ~ 48788962 (-) True G716488

Expression Profile