RNA id: XM_021612729.2


Basic Information

Item Value
RNA id XM_021612729.2
length 5588
RNA type mRNA
GC content 0.48
exon number 21
gene id dlg1l
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48356004 ~ 48616588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTTAATGCTTTCTTGGATGAGACTCCTGAGAACTCCAGAGCATTCTGCTCCCCTTGTGGTGGAATGCTGGGCTCAATACTGCCAACCCAtttccctcccccctctaccCGGTCCATCACTGGAGCGTTAAGTCAGCGTTATCCGAATGTGAGCTTCCCCTGCTGACTAATTTTTAGAATGTGAACAGAAGGACGAAAACGACATCAAACACATCTGGATCTGACCAAGCACTAACCCGTTGAAATTGTGAGGGCGGGTGGGAGACTGAAGAGAGGGAGTGAATTGAAGAGAGAAGAAAGCTTGAGGGGAAGAAGTGGTTAATAAAGCAGTATTTCAGAGATGAAGATTTGGACACAGCTATCTTTctagctcactctctctctcactcacacacacacacacacacacacacccctttctctctcgccgTCTCCCATCCCCTGCACCAGTCTGACATTCTCTGTGCACCAGGACAGACACTCGTCTCCTCATCAGATGAACATGCtgctctctccttcaccacaggttAATCCGCCCCAAGAGGGTGATTTGGTTCTCCCGTCACGTCCAGAGCCTGCTTTCTAATTTGGACGACTGCGCAGACTTAAGTGCCCGTTAAAGAGCGAGTGAAAGCGATAAGCAGCCTCTAAGTTCCTCTGGACTCCCTCAGACCCTCTCATCTGTGGGGTAAAAAGGTGAAGTCCATTCGTCCGTCCTATTGCGACCTCGGTCAAGAATCCAACTCTTGCTTTCTCCAGCACCCACCGACGCTGCCTCTGCAGCCTCCGTTGTGTTtgtgagtgagagggggagggtaGGGCGGATGACACGAGCTAGAGTGAAGCTGGAGTGAAGCCCCCCCTCCCACCttcttcctgtcctgtcctctcccctccaaccaccaccacccctaagCCTGCAACAGCGTTAGCAGCGTCGACACAGCACCtacacacagcagcagcagcagtggcagcAAGCAACAGCATGCTCAACTCGGTGTGGTACGCCAAAAAGATGGGCCGCCGCATCATGGGCACCCTGCGGAGGACCAAGAGGCTACACCAGCGCCTGCTGGCGAACCCTCCCCCTGTCGTGGTTAATACAGACAGTTTGGACACGCCTCCATATgtAAACGGAACAGAAGCGGATTATGAATATGAGGAGATCACGCTCGAACGGGGTAACTCTGGGCTGGGTTTCAGTATCGCGGGGGGAACGGACAACCCCCACATCGGTGAAGACCCCAGCATCTTCATCACCAAGGTCATCCCTGGGGGGGCGGCGGCCCAGGACGGACGACTCCGGGTCAACGACGTCATCCTGCGGGTGAATGAGGCAGACGTGCGGGACGTGACCCACAGTCGGGCAGTGGAAGCTCTGAAGGATGCCGGGTCGCTGGTGCGCCTCTACGTCCGCCGGAGGAAGCCTGTCTCCGAGAAGGTGATGGAGATCAAGCTAGTGAAAGGACCCAAAGGTCTTGGTTTCAGTATAGCAGGGGGAGTGGGGAACCAGCACATCCCAGGGGACAACAGCATCTACGTCACCAAAATCATCGAAGGAGGAGCTGCGCACAAAGACGGGAGGCTACAGATAGGAGACAAACTTCTGGCTGTGAACAGTGCTTGCCTTGAGGAGGTGAGCCACGAACACGCTGTGACTGCCTTGAAAAACACCCCCGATGTGGTCTACTTGAAAGTAGCAAAACCCAACAGTGTCTTCATGAATGACAGTTTCGCCCCGCCTGACATCACCAACTGTGAGTTTCCACTTTcCTACTCCCAACACATGGAGAACCATATCAGCCCTCCCAGCTACCTGGGCCAGCCCCTTCCCCCTGAGGCCCCGTCAGGACACTACTCGCCAACCCCCAAGAGCATGCTGGGAGAAGAAGTCACCAGAGAGCCCAGGAAGGTGGTGCTCCACAGAGGGGCGACGGGCTTGGGCTTCAACATAGTGGGTGGAGAGGACGGAGAGGGCATCTTCATCTCCTTCATCCTGGCAGGGGGACCTGCAGATCTGTGTGGCGAGCTAAGGAAAGGAGACCGCCTCGTCTCTGTGAACGGGGTGGACCTCCGCAGCGCCACTCACGAGCAGGCGGCTGCGGCACTGAAAAATGCTGGGCAGACTGTAACCATCGTGGCCCACTACAGACCAGAGGAGTACAGTCGATTTGAAGCCAAGATCCACGACCTGCGAGAACAGATGATGAACAGCAGCATCAGCTCGGGGTCGGGCTCGCTGCGGACCAGCCAGAAGAGGTCACTCTACGTTAGAGTCCTATTCGACTATGACAAGACAAAAGACTCAGGTCTCCCCTCTCAGGGGCTCAACTTTAAATTCGGGGACATCCTGCATGTGGTGAACGCCTCAGACGACGAGTGGTGGCAGGCTCGGCAGGTGACCCCGGAGGGCGAGGCAGAGGAAGTGGGTGTCATCCCCAGCAAGAGAAGggtggagaagaaagagagggcaCGGCTAAAGACGGTCAAGTTTAACTCCAAGTCGCGAGACAGAGGGCAGTCACTCAATGACAAGCGTAAAAAGAACCTATTTTCCCGAAAGTTCCCTTTCTACAACAAGGATGCAAGCGAGCAGGAAACAAGCGATGTTGACCAACACATCACTTCCAATGCCAGTGATAGTGAAAGTAGTTACCGTGGTCAAGAGGATTACGTGCTGTCGTACgagccagtcagtcaacaggaAGTGAACTACACCCGTCCAGTGATTATTCTCGGTCCCATGAAGGATCGGATAAATGACGACCTGATATCGGAGTTCCCCGACAAATTTGGGTCCTGTGTACCCCACACAACCAGACCTAAGCGGGACTATGAGTTTGACACCAGGGACTACCACTTTGTGGTGTCCAGGGAGCAGATGGAGAAGGACATCCAGGACCACAAGTTTATCGAGGCGGGCCAGTACAACAACCACCTGTACGGGACCAGCGTACAGTCGGTGCGTGAGGTGGCAGAGAAGGGCAAACACTGCATCCTGGATGTGTCTGGCAACGCCATCAAgaggctgcagctggcccagCTCCATCCCATCGCTGTTTTCATCAAACCCAAGTCTATGGAGAACATCATGGAGATGAATAAGAGGCTGACAGAGGAGCAGAGCAGGAAGACCTTTGACAGAGCCACCAAGCTGGAGCAGGAGTTCACTGAGCATTTTACAGCCATTGTTCAAGGAGACACCTTGGAGGAGATCTACGAGCAAGTCAAGCAGACCATAGAGGAACAGTCTGGCCTGTTCATATGGGTGCTATCCAAGGAGAAATTATGAAGAGGTCACACTTTCTACTCCCCTGTCGTCCTCCTCTCCTTTTTATTTATGATTTATGCCCTGTTctgctgaaactggaaacactacCCTACCACCTGCAAAATGGTCCGAACCTTATCACCCCCCTTTTCCTCAATCCCCCTCCTCTGCCAGGCTTCTCTCATGACCTAAGTCTTCGGTCCCACAGACCGAGAAGTTACAGTGACGGCCAGTGATGTTGACAACGAATAGCCAGACCAGCAGAGCAAAGCACAGAGGGGCAGATGATGTTGTTCAAACGGTACAGTTCCTTAATGTTTGAAGGAGGTGACTTTCTAAGAAAAAAGGAAAGTGAAAGAACTTTTTAGTGGCTCACGGCTTAATAGTACCTCCTATTTAAGTCTAGTTTTTTTTCGTCCGAAGACAAAGGAAGTTCAGGCATTAGGTTATAAGTAGGGGAAACAAAGCAAAACGTTGCACGTGATAGCTTTAACAGCATGTCTTTTTAGTACCTTTTTTCCACTTTCTTTTACCCCCCAACCGTCATCCTTCAACATATTTATCATAGtagtcttattttttttttttaacacagttGTATTCACTTTCCCCCCCGCTCCTTACCAGTGTATCCATGTTAGAAAGCCATTGAATTTTGTGTCTTTGAGCAGCACACAGATGTTTCTTGTGCGGCACTTGATTGAACAGGGTTCTTCAACTCAAGTCCTGGAGGGTGTAGTGTGTCCATTCAAAGGGTTTAACGCTGACCTCTGCTCTTAACAAGAACTGTGTGACGCAAACAGCATTACTGTTTGTACGGTTGTAATTCTCGTTTGCATCCTACATGTGTGTTTGATTCTTGGAATAATATTGACATTTTCATGAGCAAAATGTGATATCGCTCCTACTAAAACCCTCTAGAACTTGAGTTTGAGATCAGATCAGTGTAAGAACTATGGAGAGTTTTTAAGCTGTGTCTTGCTGTTTAAATTACCatctttgatcatttgaattgTTTTTGAGAGTGCTTTTACAGATGCAAAAGTAAGGGACTGCCATTTTTAGGTGTCGTTAGGTTTGTCCGCAAAAtgcagatgcaaaaatgtaacaACTTTATTGTACAATGAGATTTTAACATATATTTAACCCTCCGTAAACTGCCTATTTTGTTATAATAAACGTCTATATTGAACTTTACTTAAACACTAATACTATGGGAATTATTTTGATTGCATTTTTAAtcatatataaataaaaaagtataaaagatatttaaatataaatatatatatttttgttttcttttacCACCACCTcctgtaaaaatgttttttttaaagaaattattAGTCTACATCAGAAAAAAGATTATTCTAATACAGTGCTCCCTTATTGTGGTTCTAAAGAACCTATGGGTATGCTCTTTTCCCCCACAACTAATACCTCAATTATTGATTAAACTGTGAAATTATGAACAGGGTGTCACTATTGTGAAACATTATCCCTGTTTCAAGTTTGAGGtgcccctagacgctgatcttgggtcagtttagcattttctccccaatggttaaggttaggattgatggaggggaagctgatcctagttCTGCACTTGGGGGAAACTTCATTCCGGAGCAGTTAGTCTGTACTGTACCAGGACTATAGAGACCTCTTCCCCTGCCCAGGTAAAACGCATGTTTTAGATTAGAAAGCAGTCTCAGAAAGGGCCACTATGGCAGCTAGTATCCTCCCGTGTCCTATTATAGTAACCGACTAGTTGTCTTTACATCATGTGAAAGCCTACAAGATTTTGAAAAAAAACGATGTAACCCATAAAACTACAGATGACTAGAAGTAATATAGCAAAAATATTAAATAACATATTTGTTTATTACACCTGCCAAATGTTTAAAGGCCCTGACTTGAAAACAACACAGCTTCACGTGAGGAATGTACTGGCTATTCTTGAGTGTTTTTTTTCCAGAATGCAATGATGCCGGTTCTATAGTAGATATGGGAACTGAAAGCCCAGACTTGACCCATTGGACTTTTTTTTATAGACTTCGTTCAACGGAGGGCTCTACACAAGGCTTGTGTCCCTCAGCGAGGCCTCCCCCCCATCCTCGCCTTCAAGATAACGGCTTTTTCTACACTGCAAAACTGCTTCTTCCATCACCTCACCACCTCCACTTTTGGGGGGACTGTCTGGAAACATGTAAATACCCTACCAATTCTCATTCATTCCATTAATCAGagaggagaacggctcataattgaataaaaaaatataacatttctCATACAACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU814027 lncRNA downstream 5438 48350367 ~ 48350566 (-) True G716289
TU814026 lncRNA downstream 6193 48349598 ~ 48349811 (-) True G716288
TU814023 lncRNA downstream 8961 48346843 ~ 48347043 (-) True G716285
TU813999 lncRNA downstream 47537 48308186 ~ 48308467 (-) True G716261
TU813991 lncRNA downstream 57216 48298565 ~ 48298788 (-) True G716253
TU813969 lncRNA upstream 16236 48531531 ~ 48536356 (-) True LOC118965521
TU814141 lncRNA upstream 144052 48659347 ~ 48659569 (-) True G716401
TU814148 lncRNA upstream 159106 48674401 ~ 48674730 (-) True G716408
TU814149 lncRNA upstream 160847 48676142 ~ 48676553 (-) True G716409
TU814206 lncRNA upstream 248032 48763327 ~ 48763613 (-) True G716466
XM_021612708.2 mRNA downstream 12994 48329684 ~ 48343010 (-) True LOC110529989
XM_021612703.2 mRNA downstream 461828 47726790 ~ 47894176 (-) False LOC110529987
XR_002474329.2 mRNA downstream 699936 47655052 ~ 47656068 (-) True LOC110529117
XR_005052886.1 mRNA downstream 916062 47397783 ~ 47439942 (-) False LOC110529981
XR_005052888.1 mRNA upstream 16227 48531522 ~ 48536626 (-) False LOC118965521
XM_021612739.2 mRNA upstream 606754 49122049 ~ 49140272 (-) False LOC110529994
XM_021612740.2 mRNA upstream 606754 49122049 ~ 49140273 (-) False LOC110529994
XM_021612741.2 mRNA upstream 606754 49122049 ~ 49140712 (-) True LOC110529994
XR_005053034.1 mRNA upstream 881504 49396799 ~ 49396853 (-) True LOC118965653
TU813564 other downstream 66423 48288942 ~ 48289581 (-) True G715865
TU812043 other downstream 1177268 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 1298344 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 2030323 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 2897756 45457777 ~ 45458248 (-) True G712814
TU813956 other upstream 26996 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 244617 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 266826 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 273226 48788521 ~ 48788962 (-) True G716488
TU816366 other upstream 1270379 49785674 ~ 49837696 (-) True G718489

Expression Profile