RNA id: XM_021612740.2


Basic Information

Item Value
RNA id XM_021612740.2
length 3442
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110529994
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49122049 ~ 49140712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATCCCGGAAATAGCTAAGACATTGGAGGCGGGGCAGTTCGCATTGCTTCGTCTGTTTCCTTGCACTGCACTGGAGAGATTGTGCAGTTTAGGCGAGCAAAAAATGTACCAAAGGCCGTTTTCAACATAGCGTAGCTAGCCACTGTAAAAATTTAGTTGCTAGCGTCCCTAGCTGGCTAACTAAATACAGAGACGTCGCCAAGATTAAGTTACCAAAGACGAGAATACTATTTTGTTGTCCATAGTTCACCCcctcgcgcgcacacacacatcaacacggCATTGATGGTAATGCATGCAAGGAAACAACCGAGACTCAGCGATGGGTGCAACGACCGAAGGGATTCCCAACCCTATCAGACTCACAAATCCCAGCCAAAGAGTCAATCTACCACCCTTCACGGTCACGATAAAATGCGAGATGGGTTATCAGATCCTACACCGCCCTACAAAATGCTCCGGCGCTCTGATGAAAGTCCGGTCAATAAGTACAGCGACGGGCAcagcaaaacaaaaacatttcacaCACTCCGAGGCAAAGATGGTGGTACCAGCTGCTCTCCGCAAGAGAATGTGCACAACCACAGCTCCCACTCAAATCAAAGCAAGGCGTCAGACACACCTCATGAGCCTGCAGACGACTGGTCCGAGCACATCAGCTCCTCCGGCAAGAAGTACTACTACAACTGCAGGACTGAGGTCTCTCAATGGGAGAAGCCCAAAGACTGGCTGGAGAGAGAGCAGAGGCAGAAAGACCCATCTAAGAGGGAGTCCAACACTTTCCCCAAAGACCGGGACTACAGACGAGAGTCTGTCGACACAGCCACCACAAAGAGCACTTCAGGGGACAAGTCCTCCAAATCTGCACCTTCTCAGTCCTCTTCCTCCACCAATCCGGGCCTGAACCAAGCATCTGGCTCTAACCCCACcccttcatcttcctcctccacGGTCCCGGTGTCCCCCTCTGTCCAAACCCAGGCCTCGGGCCTGCTCCAAGACCCCGCCCTCCTGCGGCAGCTCCTCCCAGCGCTGCAAGCCACTCTGCAGATGAACAACGGCAGCATGGACATGGCCAAGATCAATGAGGtcctcGCGGCTGCTGTCACCCAAGCTTCCTTGCAGTCTATGCTTCATAAACTCCTCACTGCTGGACCGTCTGCTTTCAACATCACTTCTCTGCTTTCCCAAGCTGCTCAACAATCCTCCAACCAAGCGGCCCAGCAGGCGAGTCAGTCACCCATATCGCTAATGTCGGACACCTCCTCACCCCGCTCATATGTGTCACCCAGGAACGGCACGCCCCAGACCAACCTCCATAACCAGAAACCCCCACTCAGCATGCCTCCTGCCTCCTCCCAACCAAAGGTTACCCCAGTGAAACCAGGACCAGTTTCCCAACAGGCTTCAGCAGAGAAACATCCAGAGGACCCCCGAACTCTCCGACAGCGGAGTCAGGGGAGTCCGCCATCAGGACCTAACGGCAACGCCACCGGCGGCCATTCGGTTCTCAACGTCGCCTCAGCCCAGTCCAGCACTCCCGGCTCCTTCACTCCCTCGCTGGCCTCTCACTTTGATGAGAACCTCATCAGGCACGTCCAGAACTGGCCCGCCGAGCACATCGAGAAGCAGGCAGCACGGTTACGGGAAGATGCCCACAACATGGGCAGTCTCTACATGTCTGAGATCTGCACTGAACTCAAGAACCTCAGATCATTAGTCAGAGTGTGTGAGATCCAGGCCACGCTGAGGGAACAGAGAATACTGTTCCTTAGACAGCAGAGCAAAGAACTGGACAAGCTGAAGAACCAGAACTCTTACATGGTCTGAGAACCTGTGTGGGAGACGAAGGACGGTGAACTGCTTAAGACTGCAGTCAAAGCCCTCAACGAGGTCCTCTGTGCCCTGGTCTGAACACTTCTGAAACGTCATGAACCAAAGGGCAAATGAGGAATACGGAAAAGAGTCTGGGCCTGTTGAAGACATCATGGGCCAAGCATACCATCATGGGCCAAGCGTACCATTGCCGAAGCCCCTGAAAGTGTAGATTTTATTAGGCGTCCAAGATTTAAATTTTCTATGAAATTGCAGGCTGAAAGAATACGAAGCCTAGTTGAGCATTTCATGGACACCCAAACCGGTCGATTCTGAGGAACCTACAGGTCATAACTTTTTCTTACCTGAGAAACAGCTGCCGCCTTTTGGAATCGTGGACTGTTTGTTGCACTGGAGAAACTGAGAATATCTGGCTTTTCCTCTGGAATAGCCAGTTTCGGTTGGGAATGCATACATTATGCATAATGCATTAACTGAAGTTTCTAGCGTGAACTCAGATTGGCTTGAGATGTATGAATCAACTGATTCATGAACACGTCTAAAGCATAGACTTGAAGGAGTGCAAAGAAGATTCTTGAATGAGCCAACTTTgattccttccagactcatatagtTAGGAATCATGAATTTAGCAGTCCCAGGATCATGGGTTCATTATTAGCGGAGTACTTTTTTTTAATGTGATCTGACAAAGATGCATAGCTGCTTGATGGAAGTTTGTCTGTCCATGCTCTCTCCCCACTTTCCTGCTGGATGGAAATAGTCTGTAGACTTCCTAACTTCCCACCCCAACATGACTATGACCCCCCTCTAACGTTGGGCCAGGTGACTCAGAACATGCTGCCCCATGGAGTAACCTTCTGGTAACCTCCCAGTCCATATCACTAAACCCTCAACAGAATCCTACAATAAAGGGCAACGTTCTCATCCTCCACACCCTCTGAATATCCTCCTACGCGCACCTCCATCTATACCCCCATTTGATCTGTACTTGATTATTTTCCCAGTTTCTCCCGAACTTTGATGCTTGTAAGCTTGTCTGTTTTGTCTAGCTTGAGTCTGCAGAATAATTCATTCCTTATCATGTGCAGTTTCTTGCAAAATTGTGAAAGGGTCTTTAGTTTTATGTGGTTATGTAAACCTAAATTATTGCACATTATTCATTTTGTCCTTGTGAACAAGATGGGATAATTTTTTCATGGGACTCACCTTTGTCTTGACTATACTAGCTAAGCCAGTACAGCAGTAGTTAAATGGATTCCGTAGTTAACGTTTGCAACATTTAGTTTTACCGAAGTTAAACTTTTTTTAGGCCTCACTAAATAAAGTAACTATTTTACAATGAAACGTTCACATGACAATGCTGTCTCACTCTTCCACAAACTTAGCTTCGCCTTCCTTCTCCTAAGACCCCTCTGATCGATCAGTGGCGTGCTGAAATTTGGGAAGGCACCGGCCAAAGTGTTGGTCTGTAGAACAGGAGTGACGTACACACTTATCAGATAGCGGGGGACCAGAGGTTTTTGTGAGGATGGGGCGAAAATAGCTTTGTATATTATTTCTTTAAAAGTATATCAGAATAAAATAAATTATTCTACCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU814997 lncRNA downstream 7274 49059747 ~ 49114775 (-) True G717227
TU814301 lncRNA downstream 244330 48877497 ~ 48877719 (-) True G716560
TU814284 lncRNA downstream 256750 48865048 ~ 48865299 (-) True G716543
TU814270 lncRNA downstream 264945 48856899 ~ 48857104 (-) True G716529
TU814254 lncRNA downstream 288134 48833695 ~ 48833915 (-) True G716513
TU815054 lncRNA upstream 7294 49147567 ~ 49147789 (-) True G717282
TU815061 lncRNA upstream 15698 49155971 ~ 49156225 (-) True G717289
TU815063 lncRNA upstream 16955 49157228 ~ 49157718 (-) True G717291
TU815069 lncRNA upstream 25091 49165364 ~ 49165811 (-) True G717297
TU815070 lncRNA upstream 25666 49165939 ~ 49166228 (-) True G717298
XM_021612710.2 mRNA downstream 505461 48356004 ~ 48616588 (-) False dlg1l
XM_021612715.2 mRNA downstream 505506 48356004 ~ 48616543 (-) False dlg1l
XR_005053034.1 mRNA upstream 256526 49396799 ~ 49396853 (-) True LOC118965653
XM_036985545.1 mRNA upstream 302435 49442708 ~ 49490744 (-) False LOC110529999
XM_036985544.1 mRNA upstream 302435 49442708 ~ 49490750 (-) False LOC110529999
XM_036985547.1 mRNA upstream 302435 49442708 ~ 49490750 (-) False LOC110529999
XM_036985546.1 mRNA upstream 302435 49442708 ~ 49490756 (-) False LOC110529999
TU814229 other downstream 333087 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 339534 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 360886 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 505526 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 832468 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 645401 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 726357 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1796655 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 2112082 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3620766 52761039 ~ 52761451 (-) True G721275

Expression Profile