RNA id: XM_021612743.2


Basic Information

Item Value
RNA id XM_021612743.2
length 6308
RNA type mRNA
GC content 0.49
exon number 11
gene id gpr158b
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49278849 ~ 49381386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGCAGCCACACGCGTGTGTCTACGACACTTCAGGTGCCCTATGCGATATTGGAAGGGATGGGACTATGAAAGCAATTTGCTCGAGCCTCCAGTATTTCCTCTGTTTTCACGCTAATGCTCCTGCCTGCTCTAGGAGGATTGAAGTAGGCGGCTTGTGTTTTACCTCGCCCATGGCTCTGTGTAAAAGCGACTACCAGAGCTCACCGCTGCAATAACATAGCTGTTTATAATTAGCTGCTTGGAGTTGGGAAGGCGTCACGCCCAACTAAAAATGTCTGGGCAGTAAGAAAATTGGTTGACTGTGAAAACATCTGCCTGACACTCGGTTGCAAAGCGTGAACGGCGGTTGGTGGAAGCAAGTGAAGTCGAGCATCTCTTTATCATGGACAAGTAGCCTAGAGGTTTTGGTAGAAGGCTATCTTTAAATGGCACCTTATGTTATAAAATAGGGAAGATACGAAGTAATCGCATAGTAGTTTAACATTAGCGTACACATTTAGTCGTTGCTCGAAAGGGGTTAGTTTTGGTTTTCAACAGAGCAAACGGATTCTTCACTGTGTCGGTAAAAGAAGTCAAAGTATGTGTTTTTTCCTTATTCAAATGCTTTTGCAAATGGGATTTGTTTTCGGATCCAATTATGGGTATGTAGAATGGTCGGATAACGACAAAGACGCAGAAATACGAGGAAAGAACCCTTCTATTTTCAGCACTCAAAATATCAACAAGGAATCACTGCACCATCCAACTTATAACCCAGGATCCGCCACGGAGCGCACGGTGGTGGCGCACAAAATCGAGGAGGACCTGCCTAGAGTGGTGACAGCTTTCCTGCACACTGGAGACTCTTCGGCTCTTGAACAAGTCAACTGTTCTCGGAGGTATGAGTTGAGTAGCCTCCGCGGTGGAACCAATGTGGCCTCTCATTATTCTCTCCATAGCGTGCTGGACACTATAGCGCACGCGACCAACTTCCTGAACATGATTTTACAAGCCAACAGGTCGCGAGAGTACAGCCTTCGGAGGGATATTCACTGGTACCACGCGCTGGTTCGGAGTATTCTTGAAGGGGACCCCAAAATTCACAAGGCAGTGGTTACATTCCATAATGATGCTCCAACACCGGGTCCTCACGTTTTCCTTCAAGCGACAAGAACTGACAGGGAAGTGGTCCTCCAGGACCTTTCCAACTCTGCTCACCACCGTCTCAAGAGCAGGAGCCCGGATTCTGAGTGGTTTAACGAGTTCAGGGACCGAAAGAAAATGCACAGTCAGAGAAGGGCGTCAGGCAGAGACGCCACAGCCACTCAAAATAGCTACATTCTGGACAAAAGTCAAATCAAGTGGTCTGCGCCTTACCTGGAATGCGAGCATGGGAATTTCGTACCACACTGGTTACTCACCTTGTCTGCGGGGTTCTATGGGTTGAAGACAAATTCCGCACCCGAGTTCAGGGGTGTGGTCCGAGTGGATGTCAACCTACAGGATGTGGACATTGACCAGTGCTCCAGCAGTGGCTGGTTTGCTGGAACTCATCGATGTAACGTGACCAGCATGGAATGCACTCCCATTGTCGGCCATGGATTCGTGCTGGACAAGTACAAGTGCCAATGCAGGAGAGGCTTCTACCACCCAAGCAGAGTGGCACTCAACGGTTTCACAAGGAAAGAGAGCAATGGTCACGCTCACAGCGAGGACCCCTCAGAGGTGTCCAGTAAGTGCCTGCCGTGCCGTGAGGGCTGCCCCTACTGCCGGGGCGACACACCCTGCCTGGCTCAGGAAGACGGGGCCCTCCGGCTTTCTGTAGCCTCCTTCCAGGGCCTTTGCATGCTGCTGGACTTAGTGGCCATGGTGCTGGTCTACCACTTCCGCAGGAACAAGAGGATCCGAGCATCTGGTCTTATCCTCCTGGAAGCCATCTTGTTTGGAGCCTTGCTTCTCTACTCTACCGTGATGATACTGTACTTCAACCCCAGCATGTTCCGCTGTATCCTCCTGAGATGGGTGCGTCTCCTGGGCTTTGCCACAGCCTATGGAACAGTGATCCTGAAGCTTTATAGgGTGCTGAAGGTGTTCCTGTCCCGTACAGCCCAAAGGACCCCATACATGACCAGCTGGCGGGTGCTGCGTCTGCTGGGGGTCATCTTGCTAGTGGTGCTGTGGTTCCTGGTGGCCTGGACCTCGGCCGTGTGTCAGACACCTGACCTGACGTTGGCTCTTATCAACATGGGCCTCACCCCCGATGGGCTGCAGTTCAGCATGTGCCTGCTCGACCGCTGGGACTACATGATGGCAGTCGCTGAGTTCCTGTTTCTTCTGTGGGGAGTGTACCTCTGCTATGCTGTCCGGACCGTACCGTCAGCCTTCCATGAACCACGCTACATGACTGTTGCCATATACAATGAACTCCTCATATCGGCAATATTCCACACCATTAAGTTCACTCTGGCCCCTCTGTGGCACCCAGACTGGATGCTCATGCTGGTCTTCGCTCACACACACCTCACCGTGACTGTGACTTTGGGGCTTCTGCTTGTTCCAAAGTTTCTGTCCACAGGGACTCAGGCAAGGGATGACATTGCCACTGAAGCCTATGAGGAGGAGCTGGACATGGGCCGGTCTGGGTCCTACCTCAACAGCAGCATCACCTCAGCCTGGAGTGAGCACAGCCTGGACCCTGAGGACATACGTGATGAGCTAAAGAAGCTCTACGTCCAACTGGAGGTCTACAAGCGCAAGAAGATGTTGGCCAACAACCCCCATCTCCAGAAGAAGCGCAGCTCCAAGAAGGGCCTGGGCCGCTCCCTCATGAGGCGCATCACTGAGATCCCAGAGACTATGCACCGGCACGGCAGCCATGGCAGTCGTGAGGATCGTGACTGTAGTGAGCATGGGAGCAACCGGAGCACCCTTCGTCGGAACCCCTTTGACCCATCCCACTCTGGTCACAAGTCCAGGGAAGACTCTCTGAAAAACAAGGTCCTTGGCCTGAAGAAATCGCGCAGCTACGACCACGTCTGTGACCAAGGGGAGGAAACTGCTGGCGGAGAGAGCTCGTGTGGGGACAAAATCGCTGCCGCTGAGGGTTCCTTGCTTGGATCCCTCatgaggagacaggttaagaAGTCACCAGAGCATGCCCCAAGGGTTGAACCTTCCGAGTCCACTGAGTCAGTGCCCTTGGTCTGCAAGTCAGCCAGCGCGCACAACTTTACAGTGGATAAAAAGCCCATCCACCTGAGGACGTCCATCATGCAGAAGTCACTGAGTGTCATAACCAGTGCCAAAGAGAAGATGCCCGGGCTCACCAGCAAGACACATTGCGTGGAGGAAGCAAGCAAGAAGGGACTCAAGGGCTGCGATGGGAGGATGCTGTCTGAGGTGGACGAGGCGGAAGAGAAGGAGTGTTATCCCAAGATGATAATCAGCCAGTCGGTGGAGTACTCCAAGACGCCCATGGGCAAGATGGGCATCATGAAGCAGCAGGTGAGTGGCAGCCAGCCGTCCATCAATACAGAGCCAGGGAGAAACCTGTATGACCTTTCCGAGGTGTGCCCTTGGGATGTAGAGGACCCCCCAACCCCCTCTGAAGGAAGGTCACAGAAGCATGTGTCCATTGCTCTGGGAGAGACCACTACGGTCCACAGGGGGGGTGGTGGTGGCGCGGTTAGCACCAAGGGCAGTCGCTCCCAACAGAAGCAACAGGGAGCCGCAGGGCAATCACCTGCAGGCCGACGTCGCTCCAAAGGTAAGGGGAGTGAACCAGACGAGGCCAGAGAAACAAGGAAGCCCAGGTCTCCCAGATCTCCGCTCCCCCTCAAACCAGAGGTGTGCCCCTGGGCCTTTGAGGAGCAGCCGGTGTTGGGAGGTGATTcagactccatctccccagagAGGATCAGAAGTAAGAAGAGTGTTACACCCACCGATGGGAAGCCCAAGATCCTCCACTCAGACTACTCCAAATCCACGGGGAGTCTGCTGCAGCCGCCCACCTTGATGGTGGACATCTGTCCCTGGGAATACAATGAATCCCCTGCCCCGCCCTCCCCCAGCCAGGAGAAGAACTGCTCCAGCCCCACGCCTCACTCGAAGCGGAAACGAAAAGGCTCATGCTCCTAcaaagagaggggtgagagagagaaaggagggagggacagggaggaagagaagcAGCACAGGTCAAAGAGCAAGGAGAGGAGGAGCTCCTCCAGCAAGCCCCCGGAAAGACGACGTGTCAGCCAATCCTCGGAGGGCGGTTCGGTCACCGTGCCTGCGTCTGGGAGACGGAAAAGCTCGACAAGAGACCCGGAGGCGTCGGAGAACAAGAGAGTGGAGGCATGCCCGTGGGAGGTAGAGAACGCGCCAACCAACATGGCACAGACAAAAACTTCTCCAGCGAAAGAAAACTCTTTGAGTTCTAATTATAAACAACCCATGAGCACTGCCAAAAAGGTTGACGTTTGTCCGTGGGATTTTGAAGACAATGGGTCAGAGAAAAGTGCATGATATTTGACATAATGGACTTTATATGTTTTGTAATCACTGCACAAAAGCCCTGAAAACTGGGTTTTAAAGATAGGGGAAgtgtggggaaaaaaacaatgcACAATTTGCCTTGTGGTTATGTCAAAATCATATTGTGAAGAAAAACATGACACTACCGTCTCTTAAAGCATTCCAAACAAagtatttgttgttttgttagttgtGCAATTATGCAACTTAAAGTCACTTTTCTGAAATGTAGAGGAATGTGTTGTCGGTACTATTTGCTGGTAGATTTTCTCAGTTTGCATTTGTGCACGTTTTTTCACATTCTTCAATACATTCAATTGTGTCCTAAGAGTTCTCTTTGGCCTGTATCCTGCATCTGTGCCATTTTTGTCAAGTAATGGTTGGAGTATGAGTTCAGAATGTTGGTCAATGGGAAGTACATCATGTAATTTCTATATTAAGCACAGTGCACATGCCTTAATTTTGGGCCTTATAGATTATACAAAGGATATGCATTTTGAGTGTTGAGCAGGAGAAATAGGTACATAGGTGAACCGTACATAGTTAACATTTAGTACATAGGTAGCAACATGATGATACATGCCGTGAAAGCAAAGTATCTCACCTGGTCTCCATTTAGTCAAACATGCTTTATGTCTGTAAAAAAAAGCAGAAGTCTATCTTTGATGTATTCATTTCTCAAAAAAACTGCTGTAGCATGTGGCAAAGCACTTCCAAAAGTGTATTTATGTCCATTTGTCAACTTACATCCAAAACATTTGGTAATGACGATGTAATACTTGATGTTGCCTACTATAATTCAATGTTCAAGTTCAAAGTTAAAATACAACTTAAAACATAAAGCTTTCAAGAATGTTTCTATGTGCATTCATCTGAAAATATGATATGGAAAAAATATTGAAGCAGTATTTTAATCCCAAAGGTTCCCCCCTCTTATACAATGTTGACATTAATTTACATATGTTAATTTTAGGTGAATCATTAACAGGTTTTGTCTTGTACTTTTcccaaacatttttattttaaggtTTATGTATAATCACTTCAGTGCTCTCTTATGGACCAAAAGCAAAGAGAAGTCAGATGGATTATACAGCATATTTGACTTTTGCTTGCTTTCCAAAATCCATGCAATTGCTTGATAACACCTTATAGTTTTTCACCTAAAATCAAATGCTATGACATTGATTGTCAAAATAGTGTCACCATAGATTCCACacgggtaggtgtgtgtgtgtgcattattgcatgtgtgcgtgggtgtgtacAGCGTGTGTGCATTATTGcatttgtgtgtgggtgtacagcgtgtgtgtgtctgcatcatAGCATTGCATGAAAGAACTTTGCCACTTTAGCATTATTACCGATTCCCTCTTCCTTTATTTATATGGCCTTTGTAACAGTTTAGTGGTGGTGatttgatctactccactagtAACTAGTAACTCTTGTTGTTGAATGTTGTCAAAGACAtaagggtcatgttcattattaaAATGGAAAACTTTCGCAATGGAAAGaaacatttcttattggacaagttcggTTTATTTcctccctgtttgtctgttttcCTCCATTTGGTATCCTAGTGAATAAGATCTAGGTAATCAGGAACACGATGATGCTGTATGAATGCTACAGTGGCTTCTGCATGACACTAAACATATTGGCCCAGCGTCTCACTGCTCTTCGCAAACCCTGCTCCATCAGACTGTTATGACTTGTTTGTTAAGTGAACTTGTACCACTATTGTATGCTTGCAATAAATATTCATATAAAACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU814561 lncRNA upstream 12408 49266234 ~ 49266441 (+) True G716819
TU814552 lncRNA upstream 23393 49255240 ~ 49255456 (+) True G716810
TU814490 lncRNA upstream 34842 49243082 ~ 49244007 (+) True G716748
TU814489 lncRNA upstream 75570 49198274 ~ 49203279 (+) True G716747
TU814513 lncRNA upstream 99818 49178556 ~ 49179031 (+) True G716771
TU814684 lncRNA downstream 72630 49454016 ~ 49456841 (+) False G716934
TU814685 lncRNA downstream 72630 49454016 ~ 49456841 (+) True G716934
TU814713 lncRNA downstream 108902 49490288 ~ 49498508 (+) True G716958
TU814726 lncRNA downstream 128012 49509398 ~ 49512817 (+) False LOC110530001
TU814725 lncRNA downstream 132135 49513521 ~ 49514520 (+) True G716970
XM_036985536.1 mRNA upstream 69695 49206999 ~ 49209154 (+) True LOC110530924
XM_021612742.2 mRNA upstream 80670 49147967 ~ 49198179 (+) True LOC110529995
XM_021611257.2 mRNA upstream 158540 49117727 ~ 49120309 (+) False adipoqb
NM_001246352.1 mRNA upstream 158878 49118907 ~ 49119971 (+) True adipoqb
LOC110530923 mRNA upstream 347171 48902937 ~ 48931678 (+) True LOC110530923
XM_021612744.2 mRNA downstream 5779 49387165 ~ 49420283 (+) True LOC110529997
XM_036985539.1 mRNA downstream 125398 49506784 ~ 49556904 (+) False LOC110530001
XM_036985537.1 mRNA downstream 125398 49506784 ~ 49564784 (+) False LOC110530001
XM_036985538.1 mRNA downstream 125398 49506784 ~ 49564784 (+) False LOC110530001
XM_021612746.2 mRNA downstream 127913 49509299 ~ 49564784 (+) False LOC110530001
TU813841 other upstream 518109 48760343 ~ 48760740 (+) True G716133
TU813740 other upstream 734685 48537743 ~ 48544164 (+) True G716035
TU811150 other upstream 2509603 46715915 ~ 46769246 (+) True G713574
TU810963 other upstream 2812622 46465398 ~ 46466227 (+) True G713405
TU809392 other upstream 3484300 45793269 ~ 45794549 (+) True G711912
TU814748 other downstream 164826 49546212 ~ 49547085 (+) True G716993
TU815524 other downstream 472001 49853387 ~ 49854192 (+) True LOC118965615
TU815871 other downstream 1004160 50385546 ~ 50393836 (+) True LOC110530019
TU815927 other downstream 1255310 50636696 ~ 50641166 (+) True LOC110530024
TU819925 other downstream 3995846 53377232 ~ 53377705 (+) False G721689

Expression Profile