RNA id: XM_036985545.1



Basic Information


Item Value
RNA id XM_036985545.1
length 2330
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110529999
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49442708 ~ 49491248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGATATAAGATGGCAGAGCTACAAATGTTGCTAGAGGAAGAAATTCCAGCCGGTAAACGAGCACTCGTGGAAAGCTACCAAAATCTGTCGAGGGTTGCAGAATACTGTGAAAACAATTATGTACAGGTGATGCTGTTCCATCGATTTTCTCTTTCACTTCGAAGAGGAAGGCATCCGATCAGCCAACATCAGAGCAGCAGAAAAGAAGTCAAGCTGAGAGTCCGATCCCATCAACATCTGCATAGGCATCAAGCTCAGCACCAGGAAATAGTACTAATCCTGCTGATGATGACCTTAACACCAGCTTTAGTAGTACAGCGCCTGTAGACCCATTGGATGAAAGCTCTCAGCCTGGAATAAGCTTAAGCTCAACATCATCTTACTTAGAAACAAGCCAGGACAGCCAAAGGCCCAGGACAAGAGGAAAGCTCTGGAGGAGACTAAAGCCTACACCACCCAGTCTCTGGCGAGCGTTGCCTACCAGATCAATGCCTTAGCCAACAATGTGCTGCAGCTGCTGGACATCCAGGCCTCGCAGCTGCGCCGGATGGAGTCCTCCATCAACCACATCTCTCAGACAGTGGACATCCACAAGGAGAAGGTGGCACGGCGAGAGATCGGCATCCTGACCACCAACAAGAACACGTCGCGCACGCACAAGATCATCGCCCCAGGCAACATGGAGCGGCCAGTCAGGTACATCAGGAAGCCCATCGACTACACGCTGCTGGACGACGTGGGCCACGGTGTCAAATGGCTTAAAGCCAAGCAACATGGCAACAACCAGCCagcgaggggaggaggaggaggggggacatTATCGAGGACCAATCCACCGACACAGAAACCCCCGAGCCCACCCATGGCTGGTCGTGGAACTCTTGGgCGAAACACCCCATATAAGACCCTGGAGCCAGTCAAGCCTCCAACGGTGCCTAACGACTATATGACCAGCCCAGCACGACTAGGCAGCCAGCACAGCCCTGCACGCACTGCCTCCCTCAACCAGAGACCCAGAACACACAGtgGCAGCAGTGGGGGTAGTGGCGGGCGAGAGAACAGCGGCGGCAGCAGCATAAGTGTTCCTCTGGCTGTGcccactccctcccctcccagcctGGGACCAGCAGTACCCCAGGGCCCAGGCCTGGGTCCCATCCCCATGTCCCAGTTTGGCACCATCTCGAGGCAGGTCTCCCGCCACAACTCCACCGCCACCTCAGCCTCCATGGTGTCGGCCACAGGTACCTACCGCCGGGCGCCCTCCGGCAGCTCCCATTTCTCCATGTCCCAGCAGCCCCACCTCAACGGGGGACCCGCATACCCCCAGAACTTAGTGTCTGtggctcctcctccccctcctatgGTCCAGCTGACTCCTCAGATTCCTCTGACGGGCTTTGTGGCCAGAGTACAGGAGACCATAACAGACAGCCCGGACCCCCTTCCACCGCCCCCTCCCGAGGACGTTGTCATGTTTGAGGAGCCCTCGCCCCCTCCCCCGCCCCCACCAGTGGACTACCAGGGGGATGAGGAGGCGGCCGTGGTGCACTACAATGACCCTTATGCTGACGAAGACCCCCACTGGGCCCCCAAGTCCTACGTAGAGAAGGTGGTGGCCATTTATGACTACTCCAAGGACAAGGAGGACGAACTGTCCTTCATGGAGGGCTCCATCATCTACATCATCAAGAAGAACGACGACGGCTGGTACGAGGGCGTCTGCAACGGCGTCACTGGCCTCTTCCCCGGCAACTACGTAGAGTCCATCATGCACTATGCAGACTAAGGGCGGACATTTTGACAGTGCAAAAACGGCAAGATGTTACAAAAAAACGTGCTGAGTTTAGTATTTGAAACGATAAGGTAGCTTTTAGTAAGATTTTGGCATTTGTTTTGCACGGTCAAATTGTCCTGAAAGCCCCCCATCTCTTATCCACACAGAAAAACGTCAATCTTACTTTTACAGAAAACAAAAGAaagaataaacaaacaaacaaacaaacgtaGTGAAGTGCATTGCGACATGAGTGACCGAATGTTTGTTTTTGTCCGTGTCCAAATTGCAATGTTACAAAACAAGCAAAATATTCAATTTACTATGCTACATgttggagggaggggtgggttggggaggtggGCCAAGGGATAGGGAATAGGAGTTTTGAATGCTAAAAGATATGAACATTAATTTGCTTATTTCTGGTGAATTTATTTAGTTTtgtttacagtaccagtcaaaagtttggacacacctactcattcaagggttttactattttctacattgtagaataatagtgaagacatcaaaactatgaaataacac

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU815225 lncRNA downstream 65996 49376510 ~ 49376712 (-) True G717452
TU815223 lncRNA downstream 68652 49373563 ~ 49374056 (-) True G717450
TU815219 lncRNA downstream 72776 49369688 ~ 49369932 (-) True G717446
TU815213 lncRNA downstream 82730 49359616 ~ 49359978 (-) True G717440
TU815198 lncRNA downstream 96819 49345547 ~ 49345889 (-) True G717425
TU815307 lncRNA upstream 22331 49513075 ~ 49514522 (-) True G717527
TU815308 lncRNA upstream 25956 49516700 ~ 49516983 (-) True G717528
TU815311 lncRNA upstream 29410 49520154 ~ 49520498 (-) True G717531
TU815312 lncRNA upstream 30862 49521606 ~ 49521933 (-) True G717532
TU815314 lncRNA upstream 41243 49531987 ~ 49532535 (-) True G717534
XR_005053034.1 mRNA downstream 45855 49396799 ~ 49396853 (-) True LOC118965653
XM_021612741.2 mRNA downstream 301996 49122049 ~ 49140712 (-) True LOC110529994
XM_021612740.2 mRNA downstream 302435 49122049 ~ 49140273 (-) False LOC110529994
XM_021612739.2 mRNA downstream 302436 49122049 ~ 49140272 (-) False LOC110529994
XM_021612710.2 mRNA downstream 826120 48356004 ~ 48616588 (-) False dlg1l
XM_021612751.2 mRNA upstream 33994 49524738 ~ 49529686 (-) True LOC110530002
XR_005053024.1 mRNA upstream 86359 49577103 ~ 49578807 (-) False LOC118965614
XM_021612754.2 mRNA upstream 110795 49601539 ~ 49612229 (-) True LOC110530004
XR_002474470.2 mRNA upstream 138833 49629577 ~ 49630769 (-) False LOC110530005
XM_021612756.2 mRNA upstream 144731 49635475 ~ 49647848 (-) False LOC110530006
TU814229 other downstream 653746 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 660193 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 681545 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 826185 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 1153127 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 294930 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 375886 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1446184 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1761611 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3270295 52761039 ~ 52761451 (-) True G721275

Expression Profile


XM_036985545.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.25.
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XM_036985545.1 Expression in each Bioproject

Bar chart with 18 bars.
XM_036985545.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.