RNA id: XM_021612754.2


Basic Information

Item Value
RNA id XM_021612754.2
length 3157
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110530004
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49601539 ~ 49612229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcacacagacacgcacactcacacagacacgcacactcaGAAACACACTGCACCGAGCAAGGGATCCCAAGGAACCGCTGAAGAACCCAGTCGCGTAGGTGGGACAGATCGACAAAGCCGCCAAGATGTGTGACATGGGGGGATTGGATAACCTTGTGGCCAACACGGCCTACCTGAAAGCCCAGGGTGGCGACGACAAGGAGATGAAAAAGCGTCGTCGAAGTCTGTCACTACCTAAGGCCGAGCAGTGTGTCGCCATCAGGGAAACTGTGGATAAGAACTTTGAGTCGCTCTGCGAGAGGCAGCCGATCGGCAAGAAGTTTTTCCGGCAGTTCCTGGCTGCTACCCCAGAGTACATCAATGCCGCTGAGTTCCTGGATGAGCTGAATGACTGGGATCTGGCGGAAGGCGCTGACAAGGACAAGCAGAGGACAAACATGATAAACAAGTTCTGCAAGGACGCCTCCAAGAACTTCCTGACCTACCTCACTGCGGAGGTAGCCGACAAGTGCAAGGCAGTGACGGACAATGACTTTGATGAAGTGATCAATGTTAAGGTGAAGGAAGCCACACGGGAGTTTCTGAAAGGCAAACCCTTCACGGATTACCAAACTAGCCCCTTCTTTGACAAATTTCTGCAGTGGAAGGAGTACGAGAAGCAGCCCATCAGTGATAAAACCTTCTACGAGTTCAGAACTCTGGGCAAGGGAGGTTTCGGAGAGGTATGTGCCGTACAGGTGAAAAACACAGGCCAGATGTACGCCTCCAAGAAGCTGTGCAAGAAACGCCTGAAGAAGAAACATGGTGAGAAGATGGCCCTGCTGGAGAAGCAGATCCTGGAAAAGGTCAACAGCCTGTTCCTTGTCAACCTGGCCTACGCCTACGACACCAAGACCCACCTGTGCCTTGTCATGACTCTGATGAACGGCGGTGACCTCAGGTACCACATCTATTACGTCAGTGAGAAGACCAAGGGTATTGAGATGCCACGTATCATCTACTACACAGCACAGATCTGCACAGGCATCCTTCATCTGCATGAAATGGATATCATATACCGTGACATGAAGCCGGAAAACGTGCTGCTGGACAGCTTTGGCCAGTGCCGACTCTCTGATCTGGGTTTGGCCGTGGAGCTGCCCGCCGGAAAGACCATCTCCCAGAAGGCTGGAACCGGAGCATACATGGCCCCTGAGATCCTACAGGATGTTCCCTATAGGACGTCCGTGGACTGGTGGGCCCTGGGCTGCAGCATCTACGAGATGGTGGCCGCCTACACCCCTTTCAAGGGTCCCGAATCCGGGAAGCaaaaggtggagaaggaggaggtgcaGCGTCGCATCATCAATGATGAACCCCCATGGGAGCACAAGAACTTTGACGCACCCACCAAGGCCATCATCCAGGAGTTCCTTAAGAAGAAGACTGATGAACGCCTGGGCTGCAAGGGAGGAGGCGAGGATCCCCGAAAACACGAGTGGTTCAAGGCCATCAACTTCCCTCGTCTGGAGGCTGGTCTGATCGACCCCCCTTGGGTGCCCAAGCCCAACGTGGTGTACGCCAAGGACACTGGCGACATTGCTGAGTTCTCTGAGATCAAGGGCATTGTGTTTGATGCCAACGATGAGAAGTTCTTCAAGGAGATTGGCACGGGAGCCGTGGCCATTCCATGGCAACAGGAGATGATAGAAACGGGACTGTTTGACGAGCTCAATGACCCCAACAGGAAAGAGTCCGCTGGGGGGTGTGACGACGAGGGGAAGTCTGGCACGTGCACACTGCTGTGAGCAACCGAAGTTGGCACATATATACACAAGTGTGTCACCAACACATCAACTGATTCGCTCATGTTCTGTAAAATTACAACAAAAAATTACACACACAAATTATTTTACAAGGGAGGagagcagcaggagagagagagatgaggtatcCTTCCCTGGAACGGGTTGGTTGCCATTGATTTTAGTAGCCAAATGTGGCTTTACCAAGATTGGTATTGTCTCTTCAGATTGCAGCTACTCCCAGATGTTTCACATGATGTAGTAGTGCCCCCCTGGTCAACATGGAGTAAGAGTAAAATAGTAAAATACAACAAATTCATATTGTGGATACAAAAACATTATATGATTAATGGATAAATACAGTCCTCTGGTTACATACAACCTGCACCAGAAAGATTAGCATATGCAGACAGCAGTGCTAGCCCTCAAACCTAGGCATTGGCCACAATGGAGCACGATATGCTGAATGAATTCGTTCAGGAATATGGTTGGAATCTCGTTCTTGATTGTGGTGCATTCATTTAATTTGATATGGCTACGGTTTTTTTCTCGCTCCCCCACCCCCTACATTCCTTTTGCCTCTCTAAAGGCAGAGGTGATAACTTTTTTTGGGACACTTCACCTTATTACAAATTTCACCTGGAAGCAATCAAAAGCAAATAAATGATGATTTCTACCAACAGAAATTATTTCAAATGAAATGTGGTGGAGGTAACATTTACTTACCTACAGTGACCTTTAAACCCAGTGAAGTCAATCACTACATTTCCAAGCAGGTGGACTTCACAGTCCAGCATCTAGTTTTATTTTAAAACGGTGTTGTATATGaatataaatatgtatatttaTGCACTGAGAGGGGAGAAATCCACAGATTAGGTGCTAGTCAGAACTGGAAGAATGCTCAACTCTTGTGTTTGGAAAGGTTCTATGCCCTGGTTTGACAGGAGAGAGGAATGTAGAGAAAAGACACTCTATATTCGAAAGTTGAACATTTAGAGCAGTTGTGTTCTTGTAccagcccccccccaaaaatgtgaaTTTTTAGGGCTTTCTTCCTCCCTGAGATATGTGTGCGCACCTTTAACTAGAAAATTGCTTCCATTGATGTGATTTGTCTGAAGTTCGAGATATATGTACAAATCTCAAGTTAGaatctagttagctagctagacttCAAAAcctttaacaaaaaaaaaatcacatttcccTTTTGTCTTGTCTCAAGACTTATTTCATATAACTTTAAATTGACAAACTTTCCAGATCTTGACCAGTATTATGTTTTTACAGTAAATATGTTAATTATAATCTGAATATAAATATACTTGTAAATATAATATGAGAGAAAAACATTACATATGCTACTGTA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0050254 rhodopsin kinase activity molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU815305 lncRNA downstream 7795 49591230 ~ 49593744 (-) True G717525
TU815351 lncRNA downstream 22924 49577761 ~ 49578615 (-) True LOC118965614
TU815345 lncRNA downstream 27441 49573848 ~ 49574098 (-) True G717565
TU815340 lncRNA downstream 33963 49567369 ~ 49567576 (-) True G717560
TU815336 lncRNA downstream 42457 49558865 ~ 49559082 (-) True G717556
TU815397 lncRNA upstream 17363 49629592 ~ 49630539 (-) True LOC110530005
TU815382 lncRNA upstream 38362 49650591 ~ 49683675 (-) True G717596
TU815408 lncRNA upstream 55507 49667736 ~ 49672776 (-) True G717617
TU815413 lncRNA upstream 65988 49678217 ~ 49683069 (-) True G717622
TU816338 lncRNA upstream 129556 49741785 ~ 49742817 (-) True G718461
XR_005053024.1 mRNA downstream 22732 49577103 ~ 49578807 (-) False LOC118965614
XM_021612751.2 mRNA downstream 71853 49524738 ~ 49529686 (-) True LOC110530002
XM_036985541.1 mRNA downstream 110291 49442708 ~ 49491248 (-) False LOC110529999
XM_036985542.1 mRNA downstream 110291 49442708 ~ 49491248 (-) False LOC110529999
XM_036985543.1 mRNA downstream 110291 49442708 ~ 49491248 (-) False LOC110529999
XR_002474470.2 mRNA upstream 17348 49629577 ~ 49630769 (-) False LOC110530005
XM_021612756.2 mRNA upstream 23246 49635475 ~ 49647848 (-) False LOC110530006
XM_036985551.1 mRNA upstream 23246 49635475 ~ 49647848 (-) True LOC110530006
XM_021612759.2 mRNA upstream 35704 49647933 ~ 49654537 (-) False zgc:110269
XM_021612758.2 mRNA upstream 35704 49647933 ~ 49655158 (-) True zgc:110269
TU814229 other downstream 812577 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 819024 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 840376 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 985016 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 1311958 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 173445 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 254401 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1324699 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1640126 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3148810 52761039 ~ 52761451 (-) True G721275

Expression Profile