RNA id: XR_002474470.2



Basic Information


Item Value
RNA id XR_002474470.2
length 1061
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110530005
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49629577 ~ 49630769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATTCATAAGGACAGcttagctaacaaattgtcagccaacatagcATGTAAGGTTACTTATTTGAAAAgtaattactttattacattgctcaacattttgtTAGTTAAAGCAATTCATTTTTATCCGCTATCGTTGGATTTAGGCTGcatattttcttcaaatctgcAAATTatgtgaagccacgcccatttaCTGCAGAATTGCATTATGGACCCTAAAGTACGGAAATGGTGTTCTCTGCGTTTATACTTCATTTTTTTGGGCGGTTAGAcTATGTGGTTTGGAGGTGTTCTGGGTGCAAGTGGTGCGGGGCCACTTTGGCTCTGTGTTGGCCAAGCTGCGGACACTGATCAGCCGCAGGAGGCAGAGGAGCCAGCAACAGCAACTCTGTACAGACCCAGAGAGCTATGATGTATAACATCGTGGTGGAGCGCAGAGACCCCGCTGCTGATATAGAGCCAGGTTCCGAGCAACGCTGAGGCGGAGCAGTTCTGTAAAGACATGCGGCGCTGTGTGGTGACTGGGTCAGAGTGTGTCACAGGGGGACTCAGGTTACGGAAGAGGGGACTGGAGCTCTGATTCGGGGACCTCATTGAAATTATTTTTTTTGGTTGATATTTTCACTCTATATAGATTCCTTGAGGTTTCCATGCAAAAAGGACTAGAGGTTGGGATTGGTCTCGGATGGAGACTGTACAAGTCATTTTTGACAAATATGATGACTGCTGAATGTTTGATAAATGAATGTTATGTTAACAAACTAGGCTGCTGCTTTTGGATGGAAATTTGATGCTGCTACCCAGcatccatgtttgtttgtgtttcatctTTCAATCAGTACAGTGGCTGTGTTGGAAGAGGGTCAGTTGTCTTGCAGCAAAGGATGTTGTGGCAATGATTGGAGATGTTAACATGCATTTTTAGCTGCTGTTGCTATGTTGCACATGTGCGACAGTCTTATGTCCTATACATTATTGCACGAGCAGTACTACCATTTGGTGGAATGATTCAGGGAGTGCATGTTTCTGAAAATAAAATGATAAAACCCTGTACCTCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU815305 lncRNA downstream 35833 49591230 ~ 49593744 (-) True G717525
TU815351 lncRNA downstream 50962 49577761 ~ 49578615 (-) True LOC118965614
TU815345 lncRNA downstream 55479 49573848 ~ 49574098 (-) True G717565
TU815340 lncRNA downstream 62001 49567369 ~ 49567576 (-) True G717560
TU815336 lncRNA downstream 70495 49558865 ~ 49559082 (-) True G717556
TU815382 lncRNA upstream 19822 49650591 ~ 49683675 (-) True G717596
TU815408 lncRNA upstream 36967 49667736 ~ 49672776 (-) True G717617
TU815413 lncRNA upstream 47448 49678217 ~ 49683069 (-) True G717622
TU816338 lncRNA upstream 111016 49741785 ~ 49742817 (-) True G718461
TU816415 lncRNA upstream 219472 49850241 ~ 49850528 (-) True G718537
XM_021612754.2 mRNA downstream 17348 49601539 ~ 49612229 (-) True LOC110530004
XR_005053024.1 mRNA downstream 50770 49577103 ~ 49578807 (-) False LOC118965614
XM_021612751.2 mRNA downstream 99891 49524738 ~ 49529686 (-) True LOC110530002
XM_036985541.1 mRNA downstream 138329 49442708 ~ 49491248 (-) False LOC110529999
XM_021612756.2 mRNA upstream 4706 49635475 ~ 49647848 (-) False LOC110530006
XM_036985551.1 mRNA upstream 4706 49635475 ~ 49647848 (-) True LOC110530006
XM_021612759.2 mRNA upstream 17164 49647933 ~ 49654537 (-) False zgc:110269
XM_021612758.2 mRNA upstream 17164 49647933 ~ 49655158 (-) True zgc:110269
XM_021612765.2 mRNA upstream 235503 49866272 ~ 49909160 (-) False LOC110530011
TU814229 other downstream 840615 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 847062 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 868414 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 1013054 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 1339996 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 154905 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 235861 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1306159 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1621586 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3130270 52761039 ~ 52761451 (-) True G721275

Expression Profile


XR_002474470.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XR_002474470.2 Expression in each Bioproject

Bar chart with 18 bars.
XR_002474470.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.