RNA id: XM_036985558.1



Basic Information


Item Value
RNA id XM_036985558.1
length 3804
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110530011
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49866272 ~ 49937001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACACGCCAAAATAGCTGTCGCGTCTCTGTCGGATCTCGTCTGTTTATCGATCTCACTTCAGCTCAGAACCCCATTCCGCTACTGCTGTCCCATAtgaagagggggaaagaaagcaCTCCCCGACCACGCACATTCACACCGAAGCCTTCTTCAACTTACTCGCTGACCAGCTTTTTCGCAGCGGAACATGAGCGATAAAGATAAAAACGCCGcactgtTTAATCTAATTCCTGTGGGTCTGAGGGTGGTGGCCATCCAAGGGGTGAAGGCTGGCCTCTACATTGGAATGAACGGAGAAGGATTCCTCTACAGCTCAGAAATGTTCACGCCGGAGTGCAAGTTTAAGGAGTCGGTGTTTGAGAATTACTACGTGATCTACTCGTCCACTGTGTACCGGCAGCAGGAGTCCGGTCGGGCCTGGTTTCTAGGCCTTACCAAGgaaggccaggtcatgaaggggAACAGGGTCAAGAAAACCAAGCCCTCCTCACACTTTGTCCCCAGGCCCATTGAAGtgtgtatgtacaggGAGCCGTCGCTGCATGAGATTGAGGAGAAACAGCGCTCCAGGAAGAGCTCAGGGACTCCCACCATGAACGGAGGGAAAGCTGTCAACCAGAACTCCTAGCAGCAGGGCCCCAAGGGTGGGGGGCCCGGGTCCCCCCTCTCTtaaatagaggggagagaggctaCAGACCCCCTCACCAACATGCCCTCTGAAGGGATGGGCCGCCATGAGGGGGAGGAGCTACACCCAAGATGACAAAAAACTGAACTCTCGCCTGTGAAAATCTTTTAGACGAATATCAAGATAAACCCAgaggaaaacaacaacaaaaaacaacaaaaaacattttcaatCAGGAGTTGACCTACGTTTTAtgcaaaaaagaaaaaaaagctgtGACAAAGGAATGGTGGTCTCTTCACAATACAAATATCTATCGTTTCCAATTTAAGCTGTGAAAAATTAGCTTTAAAGACATGTTTAATTTCCCATGCATTGATTTTATGAATGCTATGGCACCCTCACATGCTTAATTGTGTTACTGTTGTCCAATAATAACAATATTACTTATGTGTTGATAACTCTTCATCCCAATTTAGTATCATGGGTATTCCGTTTTTCGTTTGAGACTGTAGACGTGAAAAATTGTTGGTATTTTTTTATTGCTTGACATTGACTGCACTTTCACACTGCATACACTGGTGTGAGGGTAAAGAATGAATATATATGAGAAGTCGCTGGTGGGCTCGGTAGGAACAGGAATGGGTGAGTGGGATGGCTTTTGCTCAGGTGATGTACTGTCGGAGTGGAATATCTCCTATCTCCACATACTCTTTGATATGACAGGACTAGACAACTAAAATCAATATGGCGGCTACTCCACCAAGCCTCATAGTAGTCCTCTAGCATATTATGGTGCGTTCGAGTGCGGATGGAAATTTGGAAATACAAGTTCCCGACCCAGAAATAAGGATTGAACGACCATCAAAGTCTGAGTTCCAAGTGGGAAACACGGTCCAGAATGAAGATACTGAAGTTTACGAGGTGTGACCTTTCACCTTTTTCGACCACTAGACGATAAAAGAAAGCCATTTACAACCTTAACCATCTGATTAATGTAGCTCGGTGGATCCATACAGTATATAGTTTGACATATTGTCAACATAAGCAACGTTAGCTAGATTAGCCATCTAGCAAGAATGTCATTGGTTGAAGAGTTATTCTGACTTCAAAAGCACTTGAAAGCACTCATGTTGTATATACAACTTCACCAACTGGGAAATATTTGATTCCGAGGACCGTTCGAACGCACCATTACTCTCAATGATCCAGTCCTGTGAACTTAATGGTCAAGAGGGAAAGGATAGCCTTGTAGTAGTATGAATAATCTGGCAAAGTGGGTATAGCCAGGAGGAAAAAAGACTGATAGAGCTTctggttgtttttgtttggtgtGCCAGTACTAATAAGGGCATTTCTTTCTAATAAGGTCTGGGTTGGCCAATCCTGGGGGGAAATGCAATATTCTCTCCAGAAAAGGAAACTTGGCTAGCATCCGCCAATCAAGGATTCTTTCATGAACAGGTCTACTTCACCTCTTTATGAGCTTTGACAAGACTTTCTTCGAAGTGCGTCAGAGAATGCTTTTAGTCGGTACAAATAAATCATGAAAATATCCTTGGGAAGGCACGTTGTTGTGGCTTGTGTAAGGGCTCAGCAGACTCAGGCTGCTTGGGGCTAAGGTGATTGTGAAAGCTATCCAAGTCCCAATACTCTTAAGAAGCTTCCGCTCCTTGTGTCTTTATCTTTGTTATCAGTGCACTGAGCAGACTAGAAATGTCACAATAATCGGTTGATGGGGTGTAGCGCATTCATTTGATGTAATTAGTCTCTttatatctgtggccaatgaGGGAAAAGAAACTAAGTTTTAAGGTACTTTTCGACAAAGCCCCTGTgagctcctcctcttccatcaATACCCTTTCTCCTACGACACTGTAATCAATAATAACCTAGCACAATGCAACGGGAAGGAGCCCAGTCATCCAAAaccaacaaaaacaaaatgtggatgCCGGAAGGTTCTTTTGCCCTGAGAGTCTGTAAATATTTCACTTTTTTTGTACTTACAGGCTGGCATCCCAATGGCTTCCATCTCAGTAGGTTTTGTGAGCCATGAAATGAGCCGATTGCTGTATTGTGGAAATGAGCCCCCGCCATTTCATAAATCAAATGTAGGAGAGTGGCTGTATATATGAAGAGTAAAAAGGCTGGTTAAACCAGCAGGGAAGGCAGGGAGGAATCTCCCCCATCACCAAGATGGAGAAGTCACCATGTCCACTGATCCTATTGTTCGCCTAACTCAGGAAGTCCCACTCCAGTCTTATGAACGGAGTCTGACAACAAGGCGGGCCACCCTTGCCCAGCACCTAATGCACAAAGCCTGGCCAAAGGTGTGGTCTTGGGGGGGTTGGGTCAGGGGTGTTGGTGGCAGAGTGGGGGGTCTGGAAGTCTTGGGATCTGGCCAGGGCATGAGATAGGGGATGTCAGGGTGTCATGTCAGACACTTCCTCATTTAACTGCGGCAGGTAATGGCAGAAGACCAGCACAAGTCTTCCACTGGGATCAGGAGAGAGCTGGGCTCAGTTCTGCAGTAGTTGCTCCAGTTTAAATAGCCCAAAGGCACAGATCTAGTAATCGGCTTACTCTTCCTCAGttataaccttaaccattaggggaTAGGGacgcaaaactgaccttggatcagcaTCAACTTCATACTACTCGGAAGGATGTACTTTACATAACCTGCTGGCAGAGAAAAGAAGGGAAGATAGAAATGAGAGGTTAAGAATAGGGAGTGAGAGTAAAATAGGGGATATGCGAGTGAACTAAGAGAGCACTTTTGGGGGACAAAATGAAAATGCCAGGGGCTCAATACTGTGTGAAGAGATATTATATTTATGTTTAAGTTTGCAAATTATTTCACCGTAAATGAAACACAGGCATATATGCATTATGAATTGTgagatgaaaaaaaaaatgcattgatATTTAAAAATCAGAATGAAGTTAGTGATTGTTTAagaataaaaaatacattatcaAAAGCTTTCACTTATTTATTGTACCGCTGTGTTCTTGTTGATAGCCTTGTGCACTGTATTCTTCCCCAAAAAGATGACAACAACCCCAAAAAGACTCGATTTCATGTAGAGTATAACttcttctaccctctctcccaGATTTCATGTAGAGTATAACttcttctaccctctctcccagatttcata

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU816427 lncRNA downstream 1541 49864505 ~ 49864733 (-) True G718546
TU816425 lncRNA downstream 5491 49859964 ~ 49860783 (-) True G718544
TU816419 lncRNA downstream 10875 49855104 ~ 49855399 (-) True G718541
TU816415 lncRNA downstream 15746 49850241 ~ 49850528 (-) True G718537
TU816338 lncRNA downstream 123457 49741785 ~ 49742817 (-) True G718461
TU816475 lncRNA upstream 6715 49943716 ~ 49944228 (-) True G718594
TU816479 lncRNA upstream 10767 49947768 ~ 49948123 (-) True G718598
TU816514 lncRNA upstream 57925 49994926 ~ 50001193 (-) True G718625
TU816554 lncRNA upstream 114444 50051445 ~ 50059575 (-) True G718663
TU816538 lncRNA upstream 131512 50068513 ~ 50071983 (-) False G718648
XM_021612758.2 mRNA downstream 211116 49647933 ~ 49655158 (-) True zgc:110269
XM_021612759.2 mRNA downstream 211737 49647933 ~ 49654537 (-) False zgc:110269
XM_021612756.2 mRNA downstream 218426 49635475 ~ 49647848 (-) False LOC110530006
XM_036985551.1 mRNA downstream 218426 49635475 ~ 49647848 (-) True LOC110530006
XR_002474470.2 mRNA downstream 235505 49629577 ~ 49630769 (-) False LOC110530005
XM_021612768.2 mRNA upstream 27913 49964914 ~ 49970082 (-) True LOC110530012
LOC118965625 mRNA upstream 46388 49983389 ~ 49986205 (-) True LOC118965625
XM_021612771.2 mRNA upstream 156496 50093497 ~ 50095929 (-) True LOC110530015
XM_021612772.2 mRNA upstream 400730 50337731 ~ 50366270 (-) True LOC110530016
XM_021612779.2 mRNA upstream 475979 50412980 ~ 50434787 (-) False LOC110530021
TU816366 other downstream 28578 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1077312 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1083759 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1105111 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 1249751 48542291 ~ 48616523 (-) True dlg1l
TU817090 other upstream 999927 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1315354 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2824038 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3526181 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3561147 53498148 ~ 53499730 (-) True G722459

Expression Profile


XM_036985558.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

XM_036985558.1 Expression in each Bioproject

Bar chart with 17 bars.
XM_036985558.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.