RNA id: XM_021612771.2


Basic Information

Item Value
RNA id XM_021612771.2
length 2130
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC110530015
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50093497 ~ 50095929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagagcgagagagagcgataggagagcagaccagagagagagagagcgatagacgAGCAGACCAGAGAGAGATTACACTAAGGAGGGAGGACCTGTTGACATATATCTCTCAAGTCAGCCATGAGGATCTCCTTCAGGACTGGAAACTACCTCAGATAACCTGACACCACtgcaaacaagcatacagtcaacgCTGGGGCACATGGACCATGACACAACCAGGATGACTCCACTCTGAGACCCACCAAGATGCACAGCTTTGGAATTATGAACCACAACTGTCTCAACCAGCCTCCAGGAAGTTTTGTGGAGTGTGTATGTCTATCATGATGTGTTTTTGTTATGACGATCTGATTGGAGGACTGACAGGTGGAATGACTAAAGAGAGGCTGGAGGAACAGGCTTGTTAGTCTGCGCTGGTACCTATTGTGAGCTGGCTGGATCAACCTCGAGGGGGGCTCCCCTAGTAGCCATGGCTGAGATGGAGGAGTTCTCCCCCATGTCCCCGCGGCGCACCCCACGCCGGACCCCCCGTGTGCTGCGCCTGGACCCGGCCCTGCTCCAGCGGCGCGTGTTGGAGGACCAGGTGGAACTGTGGTGGTTCCGCGAGCCGCGGCGCTCCCTGCTCTGCTACTGCATCTCAGTGTGCCTCGTCCTGGGCTTGGGGCTGGGCGGCGTAGgcctcctctccaccaccaccagcctgtcCGGGGAGTGGCGCCTAGGAGTGGGCACCATGCTCTGCCTCCTAGCTCTGGCTGTCCTCCTCAAACAGCTCCTAAGCTCCGCCGTCCAGGATATGAATTGCGTTCACAGCCGGAGGCGGATAGAGTTAATGAAGAGTGGTGGGCGGGCGGACCCGGTGGTCATCATTTTCACCGGGATGGCTTTGGCACTCTGCGGAGGGGTCCTACTCTACATGTCGCTGGCCAGCGGGCACCATGGGCCCGGGCAGCGCCACAGGGATATGTTTCTGTCCGGGGTGGTGCTACTGTGGGTAGGGGGCACCACCGGGTTGGCGGTGGCTGGGTACTTGCTGGTAGTGCACCtccagcagaggagagagaggaggatgttgcAGAggcggaggaggggagggagagggttaCGGGGCAGGGCAGTCAGGGTGTTTACGGTCTCCTCTAGTAGAACTAGCCTCATCTGAGAGTGCAGACCCGGGtcttgttcattaggcaccaaacggcgTTGCCCTAATGAAAACTACCCTTGGTTGAAATAGTATTTGTATTTCTTTAAAATACTtgagctgtgcttgattgagcttgcctggcgcaaTGGGACCAGAGCCATATCATACTGTATACATCCCAGGTCTGTTGTAGAGGAGAGGAAAacaagtgaggagaggagagcaggaggtgaaaagaggagtggagagggaggcAAGTTAGGAAAGGAGAGACGAGATGAGACTAGGGGACTTAATAGATGAAGGGACTTGAGGGGAGGGAAAGATAGGAAAGGGGTATCACCACTCACTCTCCCGGGTCTGTAACAGAGTCCTGTGTTTGTTGCTGGCACTGTGACTGCGTCATCCTGTTGACTAATGCCCATTGCAGACCGTGCCTACTATGCCAACTATGCCATTCACCACTGCTGTGTTGTGGGAACCAGGCTGTGCAGGGTGACACCAGCCCCACGGACCCCCAGGACCCTCAGTCACACTGGCCATTGTTTCTATCAGTGGCAGAATGAGCGCTACACTGCCGTCGTCACAAACAAGCCACTCGCATTTGGGGAGACCCGACCAAGTCACATTGTTCTAGTTCCTCTGTGTTGTTTTGACTCACTTGTCCTATTTGATGTTATTATATTGACCCAAATTTGGTAGTCTTATCAGTGTTTAATTTGTAAATCGGAAGGTGCAGGAACCATTTTTTTGCATGAAATCGGGTGACCTGGGGGCTCAGAGGTACTGGAAAACATGACAAAATagatgcacctttataataaagcataaCGTGCATATCGTCGCATTCACCTAGTGGCATAGAGTAGAGGCGCttacagaagttgcacacatgggcagtggtggaaaaagtactcaattgtcatacttgagtaaaagtaaagataccttaatggaaaataactcaagtgaaagtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU816538 lncRNA downstream 21514 50068513 ~ 50071983 (-) False G718648
TU816539 lncRNA downstream 21514 50068513 ~ 50071983 (-) True G718648
TU816554 lncRNA downstream 33922 50051445 ~ 50059575 (-) True G718663
TU816514 lncRNA downstream 92304 49994926 ~ 50001193 (-) True G718625
TU816479 lncRNA downstream 145374 49947768 ~ 49948123 (-) True G718598
TU816673 lncRNA upstream 145072 50241001 ~ 50241249 (-) True G718780
TU816674 lncRNA upstream 145735 50241664 ~ 50241894 (-) True G718781
TU816676 lncRNA upstream 153929 50249858 ~ 50250116 (-) True G718783
TU816677 lncRNA upstream 154822 50250751 ~ 50251056 (-) True G718784
TU816695 lncRNA upstream 201471 50297400 ~ 50383091 (-) False G718798
LOC118965625 mRNA downstream 107292 49983389 ~ 49986205 (-) True LOC118965625
XM_021612768.2 mRNA downstream 123415 49964914 ~ 49970082 (-) True LOC110530012
XM_036985558.1 mRNA downstream 156496 49866274 ~ 49937001 (-) False LOC110530011
XM_021612767.2 mRNA downstream 171997 49866273 ~ 49921500 (-) False LOC110530011
XM_021612772.2 mRNA upstream 241802 50337731 ~ 50366270 (-) True LOC110530016
XM_021612779.2 mRNA upstream 317051 50412980 ~ 50434787 (-) False LOC110530021
XM_036985563.1 mRNA upstream 317051 50412980 ~ 50434788 (-) True LOC110530021
XM_021612797.2 mRNA upstream 569702 50665631 ~ 50674317 (-) False LOC110530027
XM_036985586.1 mRNA upstream 569735 50665664 ~ 50674317 (-) True LOC110530027
TU816422 other downstream 204245 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 255801 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1304535 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1310982 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1332334 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 840999 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1156426 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2665110 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3367253 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3402219 53498148 ~ 53499730 (-) True G722459

Expression Profile