RNA id: XM_021612772.2



Basic Information


Item Value
RNA id XM_021612772.2
length 4611
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110530016
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50337731 ~ 50366270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTATGAGAGGATTCTAAAGAGGTATTTGCCAAGCAGCCACGGCATCCCACTCTCCCTGATGGTACCTCCTtctaggagagagacagacaggcagggctgAGATGAGAGAGAAGTGACTGGAGAAGTACTGGAACTCAGACTGGAGTGGATACTCTGACACCCTCACATCAGGTTACAGTGGAGAACACCAAAATTGTTAAAGGCAATCACCTGATTTACACCACAAGAACAGAGTCACAACACCTGTAGAAGTTGGCAAGAGGGAAGACACACTCCGACTGGCACTCAGACTACCAACAACCAGATAATGTGCCAACAAACAATACTCACAGCTGAAGCCTGCAAATGATGGACAAGCAAAATGGAAATGGGCCCAAAGCCCCAGAGAATAGGGTGACGGGGAAGCCTCCTCTGTACTCGGTGGAGACGCCCTATGGATTCCACCTGGACCTGGACTTCCTCAAGTACGTTGACGACATCGAGAAGGGCCACACCATAAAGAGGGTCCCCATCCAGCGCCGGAGCAGGGGGCAGAGGCCCAACACACTCCCCAGACACCTCAACCTCTCTGGGCTTGGCTATCGGCCTACCCCCTGGGGCTCCACTGGAGCTCTGGCCCCCAGGTCTCGCCTAGCCGACCCCCACTATGGCTCCTGGGCTTATGATGGCAGGTCGTCAGCCTCCTCTGGACGGTATAAGTCTGTGGCTGAGATGGAGGCCAGTATCCGAGCCTTTGATGAGCAGCCCTTGGGGGAGCACATCAGGCCAAATCTCCTGCGGGCCTCCAGCCTACCTCTCACCGTCCTGCTGAGGAAAGATTCCGAGTCAACTGAAAACCCGGCCAGTCTCCGAAGCTCCAGAGACCGTCTCGGAGGAAGGGACATGTCCACAGAAGACAGCTTCTACTCCCTGGACTGCTCATCCGACTTTCGGTCAAACCAGGACTTTTCTGGAACCCTCCGCCGCCTCACCGAAGCCCTGGAGCGCGTTGGCGAGCTGGAGGAGGAGGTCCGGGTCATCCCGGAGCTCAAGGCACAGATCTGCATcctgcaggaggagagggagaggttccGTCTCGGACTGAATCCCCGACCCAGATCCCAAACCCTGGTCAACGGGGCCAAAAACCCCTCTTATGCGACCTCTGACCTCAAAAGACCCAGGAAAGAAAGTCATCTCTTCACCCACAACAACGATGTCACCGATGACGACTCTAACCAGACACACGAATGGAGGACGAGCACAGACCTAGACGAGCTTCTTACAGTGACATCCCTGCAAGCCAAAGTGGCCATGCTGGAGCAAAGGCTTCATGAGAGCAGCTTGGACCTCCAGAACGCCACCTTGCTGCTGAGAGAACAGCAGGAGGAGGGCCGGAGGAAGGAATTGAGGATGAAGCAGCTCACCAGAAACACTGAGGGCTGGGTGAGAGCGGAGAGAGTCCCAGTGGACCAAGATGATGAAGAGACCGATAATTATTCTAGGTGGTCTTTAGCAGGTGCGCATGGTGCGTCCAGTCGAGAAATGTTTAATGAAGGAGAATCTTTGTCGACCAATGCAGTGGCCATCGGAACAAATAGACAAAACGCTGGCACTCAGATCGAGGGCCTTGGAGATCATCACATTTGGGTTTCAGCTAGCGCTTCCATGATGGAGGCCCAAGCTGGTCAACACAATTCAGAAATGGTGCTCAATCGCTTTAACAGAGAACCAGGCCTGGCAGTAACCACGGAGCACATGCCACAGAAAGAAACCTCCTCAGGTGGCATGGAGCAACCTGTGGCAGCCCTCCACGTGAAGAGGATCCAGGTTCTCCTGGAACAGCAGTGGGGGTGTCTATGTGGGGGGACAGCAACAGAGGGGGGCAAGGCCCTGGCGCACCCAGACCCCAAGGTCAATTCGCTACAGGAGGAGATGATGAGTCTGGTTCATACTCTTTCCTCTTACTACAACAACGGATCCAGTGACGGAGAAGCTTTTCAAGGAGCCCCGAAATCTATCATGAGGAGAAATGGCGGTGCTCAGATGTCAAAGAACCTCCACTTTACGGGTGTGAACAGCGGCTTTGAAACAACACCAAATGAGGATTTGGACAGTAAGAGCCATGAGAATGTGGACATCTCCGACCTACAGCAACAGCCAGAAGGACAACTCCACCCTGGGGAGATGGTGGAGAAACCTGCAGAACACGGTGGTTCCAACCATGGAGACCAGAAAGAGGGAGACCCAAGTCAAGAGATGATGGAAGGAACCGATCCAATGGACCAGACTACTCAATATGTACAACCAGACTCACGTACAGATAGTGGTGAAAATCTGAAAGCTGGAGAACCAGAAAAACAGGCCAAGATAGACACCAACAAAGAGGAACCTATGGAGGCAGAACCAGACCCAAACAGAGATTCCAAACATGAACTGAAAGACAGGGACACGGTAGATGGAGAGTTCATAGCAGCGTGTAATTTCCTCAAAGATCACATGGACAACATGGATAACCCCAATGATGAAATGAGGCGGGCTTTGGTGGTGCTGTTCCGAGATTGGTTCCGGGTGGCGGCTGAAGAGGACTCCTTGGCCAATACCGTGTCTGTGTACCTCAGAGAGGTGAGGAAGGCCACGCCCTCGCTCCTCCCCTTCCTTGTTAACATGGCGGACGACAACGGCAACACAGTGCTGCACTACAGCGTATCCCATGCCAACTACCCTATCGTCAGCCTGCTACTGGACACAGgtgtgtgtgaggtggacCTCCAGAACAAGGCAGGGTACACAACGGTGATGCTGGCCTCCCTAACGGCCCCGGACGGCTCTGGGGACATGGAGGTGGTCCGTAGGCTCATGGAGCTGGGGGACGTCAACGCTCGAGCCAGCCAGgggGGTCAGACAGCTCTGATGCTAGCAGTGAGACATGGCCGGGGCCTGATGGTGCGTCTGCTGCTACGCTGCGGGGCAGACCCCAATGTCCAGGACCACCAGGGGGCCACGGCCCTCATGTGTGCCTGTGAGAGGGGCCACACACACGTCGCCTGGCTTCTGCTGGAGAGGGCCGAGTGTGACACCAGCCTCACAGACCAGCGTGGTCGCACGGCCCTCTTCGTGGCCCAGCAGGGGTCCTACGGTGACATCACAGCCCTCATCCAGGCCCACCACACACATGCTGGGACATCTCTCTGAGACCTTGACCCCCCTGTTCCCGTGGATAGGTCAAAGACGCCACAGTGCAAGGAATGTCCAATCCTAAATGGCAACTtattccctactgtatatagtgcacttttGACTACAATCTAACTAGCTAAGTACATCTAAAAGCTATGGTAGAAAACTGTGTTGGTAGCCTTTTGGCTGTCACTTGACTTCTCCAACACTCACCACTTACTGAGCTCAGCATGTCATGTTAGCATTTCTCACTGACTTCAAGTACTAGGCTCtggccaagagtagtgcactCACTATAcagtagggaatagagtgccatttcagacacagccgaAGATCCCTCACCTCTGCCCGTCTGATTCGGAGGTGGCCcgtctctcttctcatctccatcTTGGGCCACTAAGGTTCAGGTTGGGAGGTCAATATCATTCACTATTCCCAACCATGCTTGGAGTTAGCTCTTCAGTCCACTTCCTGTTCCTGGACAGGAAAACATTTGATTTTAAGACTCTTATGTGCCAGTGGAAGTGTTCTTATGGCAAGCGTGCACTGCTCCAAACTTGGAGTGTGATattgtctgctggtttttgtcCTATTAAAATTTATCCAGGTTTCTATTCATACCTGGGCAAATAGCAAAGTGGACTCGTCAGCCGAGTTCCACAATGGGagatttaaaaacatttaaaaaacagccAAACTGCGGCCCTTGAGACCTCGAGCCGTCTAGCCCCGTGTTATTTTCGAAAATGCATTATTACAGTATATGCTGGACCACCAATGGGTGGATGGGTTGATTGCTCTGCTGGTACTGTATACGTTTCAGTGTCATTATCCCCTGTATGGCATTAGGGGAGTGACAATGTTCTATCTGTGTGTCAACGCCTTTACATCTCTTCACATGGCCTTTATTCTGTGATTGTACGGTGGGGCTTCTATTTTTAATTTCTATTATTTTGACTCCGCCTTACACCATCTCTACCATGTGCAACAGGGAAGAGAGCAACTGTGTTGGATAATATAGAAATCTCAGAGAAATCGAATCTAATTGGTATTCAGGTCTGCACCACTACCCTCTGGGCATTTCATTCAGCTAGAGATAATTATTACAGTAAATAGGCAGTACATTTACATTGATGCTTGTCTGGATTGAACTGTTTCCCACTATCAGCAAAATGTTGCATGTATTTTAAAATATCAGTGCGCTATACTGGTAAAGTTTGTTTCCTTATTATCAAAATCCATTATAGACAAACCAGACAGTGGATTTCTCTACTCATTTTGTATGCATTACTCTTAAAGCTAAGCAAAATTGCTGACATATGACAGTTTTAATTAAATGTCTGATGTTTTTGCCAATGATTTTGTATTGATATGGGGCAAAACACATGACATCCATTGTACTCTGTCTATGCAATGACATAAATGGCCAGCGGATGGCGCTACTTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU816677 lncRNA downstream 86675 50250751 ~ 50251056 (-) True G718784
TU816676 lncRNA downstream 87615 50249858 ~ 50250116 (-) True G718783
TU816674 lncRNA downstream 95837 50241664 ~ 50241894 (-) True G718781
TU816673 lncRNA downstream 96482 50241001 ~ 50241249 (-) True G718780
TU816538 lncRNA downstream 265748 50068513 ~ 50071983 (-) False G718648
TU816694 lncRNA upstream 13512 50379782 ~ 50383091 (-) True G718798
TU816849 lncRNA upstream 159205 50525475 ~ 50525714 (-) True G718945
TU816897 lncRNA upstream 205038 50571308 ~ 50571740 (-) True G718986
TU816835 lncRNA upstream 321970 50688240 ~ 50714007 (-) True G718931
TU816971 lncRNA upstream 348312 50714582 ~ 50714934 (-) True G719056
XM_021612771.2 mRNA downstream 241802 50093497 ~ 50095929 (-) True LOC110530015
LOC118965625 mRNA downstream 351526 49983389 ~ 49986205 (-) True LOC118965625
XM_021612768.2 mRNA downstream 367649 49964914 ~ 49970082 (-) True LOC110530012
XM_036985558.1 mRNA downstream 400730 49866274 ~ 49937001 (-) False LOC110530011
XM_021612779.2 mRNA upstream 46710 50412980 ~ 50434787 (-) False LOC110530021
XM_036985563.1 mRNA upstream 46710 50412980 ~ 50434788 (-) True LOC110530021
XM_021612797.2 mRNA upstream 299361 50665631 ~ 50674317 (-) False LOC110530027
XM_036985586.1 mRNA upstream 299394 50665664 ~ 50674317 (-) True LOC110530027
XM_036985589.1 mRNA upstream 311902 50678172 ~ 50685211 (-) False LOC110530028
TU816422 other downstream 448479 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 500035 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1548769 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1555216 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1576568 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 570658 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 886085 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2394769 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3096912 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3131878 53498148 ~ 53499730 (-) True G722459

Expression Profile


XM_021612772.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_021612772.2 Expression in each Bioproject

Bar chart with 18 bars.
XM_021612772.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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