RNA id: TU815871


Basic Information

Item Value
RNA id TU815871
length 2018
RNA type TUCP
GC content 0.48
exon number 9
gene id LOC110530019
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50384296 ~ 50397007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCACAGCCAGTCACAACCCTGGGGGACGCGAAGGAGACTTTGGCATCAAGTTCAACACTGCTAATGGAGGCCCAGCCCAGGATGCGGTCACCAACAGAATCTTCCAGATCAGCAGAACCATAGAGGAGTATGCCATCTGCCCAGAGATCCGGGTAGACTTGGCTACCCTGAGCAAACAGACGTTTGATCTGGAGAACAAGTTCAAACCCTTCACAGTGGAGATAGTGGACTCGGTAGAGTCTTACGCCAACATGCTAAGGAACATCTTTGACTTTGCTGCACTGAAGGAGCTGCTGTCTGGGGAGAACCACATCAAGATCCAGCTAGATGCCATGCATGGAGTGATGGGTCCCTATGTGAAGAGGATACTGTGTGAGGAGCTAGGCTCCCCTGCGAACTCTGCCATTAACTGTGTCCCCCTGCAAGACTTTGGGGGCCAGCACCCTGATCCCAACCTCACCTATGCAGCCGACCTGGTTGAGaccatgaggggtggccagtacgATTTTGGAGCTGCCTTTGATGGTGACGGTGTGCGTGCTAACTCAAACAATAATTTTACTGTCTATATAATAATGATCACCATTTTAAGTAATCATCTTTAATTTGTGAATTTCTCCTTTATATAGAAAAAAAACTAGAACCCCCCCCCAAGAAATATTAAAGTGCTTTAACAGTCAATGCTGACACAACAACTGAAAATCTACTGAGAAACGTTTTATTATTTTTCATCCAAGACAATTAAGGAAATGTTAAAATAGTACCCATCAAGCATCCCAGACAGACTGAAGACTTCTATCACAACTTTAGGGTTAGATGCTTTGAATTGTATTTAGATAAATCACCATGCTGCTAAACcctctcttttttattttttacttaacctttatttaactaggcaagccagttaagaacacattcttatttacaatgacgacctctCTCTTGTcgcctgacctctaacctctgtttGGTTTTCCAGGACCGTAGCATGATTCTGGGTAAGCATGGCTTTTTCGTCAACCCCTCGGACTCGGTGGCTGTCATCGCTGCCAATGTCTTCAGCATCCCCTACTTTCAGCACACAGGGGTGAGAGGCTATGCCCGCAGCATGCCCACCAGCGCTGCACTGGACAATGTGGCCAGGGCAACAAAGATTGAACTTTACGAGACCCCCACGGGGTGGAAGTTCTTTGGCAACCTGATGGACGCAGGCAAGCTGTCACTGTGCGGAGAAGAGAGTTTCGGCACAGGTATCTCATCAGCGCTGACCATATCCGTGAGAAGGATGGACTTTGGGCCGTGCTGGCATGGCTGTCAATCCTGGCAACGAGGAAGCAGAGTGTGGAGGATATCATAAAGGACCACTGGCAGACGTTTGGCAGGAACTTCTTTACCAAGTATGACTATGAGGAAGTCGACCTGGATGCAGCCATTCAGATGATGGAGGATCTGGAGCTGAGGATACTGGGGAAGGCCTTTATGGGCCAGCGGTTCGCTGTGGGGGAGAAGCTCTACCAGGTGGAGAAGGCAGACAACTTTGAATACACGGATCCCGTAGACGGGCGCATCTGCAGAAACCAAGGCCTGAGGATAATATTCACAGATGGCTCCCGGATCATCTACAGGCTCAGTGGGACAGGGAGTATGGGGGCAACAGTTCGGGTCTACATCGACAGCTATGAGAAAGACCCTGACAAGATCTTCCGAGACCCACAGgtgaTGCTGGAACCCTTGGTTACCGTAGCCCTGAAGGTTTCACAGCTTCATGAGAGGACAGGCCGCAGTGGCCCATCAGTCATCACATGATCATCCATTACCACCCCTGCCCTTCCTAATAAAAGCCTCAAACTACACTGTCTTTTCCCCATCCTACCTTCCCTGAGATGGTCATTTTACCCTTCATCCAAAGCATCTTTGTGCGATTTTGTACTTTCAGATCAACCCCAACTATCACCACTCAGCTTCTTATTAATTGAGAAAGAGTGAACTGTAccaaaaataaaacattctcaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU815808 lncRNA upstream 106575 50278709 ~ 50278971 (+) True G717970
TU815793 lncRNA upstream 142512 50242819 ~ 50243034 (+) True G717955
TU815792 lncRNA upstream 143521 50241653 ~ 50242025 (+) True G717954
TU815791 lncRNA upstream 147065 50238255 ~ 50238481 (+) True G717953
TU815790 lncRNA upstream 147337 50237956 ~ 50238209 (+) True G717952
TU815887 lncRNA downstream 20864 50414700 ~ 50416134 (+) True G718044
TU815899 lncRNA downstream 37086 50430922 ~ 50434684 (+) True G718053
TU815917 lncRNA downstream 280027 50673863 ~ 50679877 (+) False G718060
TU815915 lncRNA downstream 284117 50677953 ~ 50679877 (+) False G718060
TU815914 lncRNA downstream 284369 50678205 ~ 50685225 (+) False G718060
XM_021612777.2 mRNA upstream 2458 50379771 ~ 50383088 (+) True LOC110530020
XM_036985560.1 mRNA upstream 49221 50146364 ~ 50336325 (+) False LOC110530017
XM_036985561.1 mRNA upstream 49221 50146364 ~ 50336325 (+) False LOC110530017
XR_005052891.1 mRNA upstream 49221 50146364 ~ 50336325 (+) True LOC110530017
XM_021612770.2 mRNA upstream 313555 50043342 ~ 50071991 (+) True LOC110530014
XM_021612781.2 mRNA downstream 41099 50434935 ~ 50439435 (+) False LOC110530022
XR_005052892.1 mRNA downstream 41099 50434935 ~ 50441957 (+) False LOC110530022
XR_005052893.1 mRNA downstream 41099 50434935 ~ 50441957 (+) True LOC110530022
XM_036985564.1 mRNA downstream 49868 50443704 ~ 50578861 (+) False LOC110530023
XM_036985565.1 mRNA downstream 50217 50444053 ~ 50578861 (+) False LOC110530023
TU815524 other upstream 531354 49853387 ~ 49854192 (+) True LOC118965615
TU814748 other upstream 838461 49546212 ~ 49547085 (+) True G716993
TU814604 other upstream 1051774 49332841 ~ 49333772 (+) True G716862
TU813841 other upstream 1624806 48760343 ~ 48760740 (+) True G716133
TU813740 other upstream 1841382 48537743 ~ 48544164 (+) True G716035
TU815927 other downstream 242860 50636696 ~ 50641166 (+) True LOC110530024
TU819925 other downstream 2983396 53377232 ~ 53377705 (+) False G721689
TU820195 other downstream 3276560 53670396 ~ 53671859 (+) False mrpl34
TU820196 other downstream 3276560 53670396 ~ 53671859 (+) True mrpl34
TU820345 other downstream 3532381 53926217 ~ 53927959 (+) True rps28

Expression Profile