RNA id: XM_036985563.1


Basic Information

Item Value
RNA id XM_036985563.1
length 7065
RNA type mRNA
GC content 0.46
exon number 25
gene id LOC110530021
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50412980 ~ 50434788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCAGAACGTAAAAACATACTGTTGTTTCCACTTTATTGATTTACTAAATAACCAATAGACGACTACATGGGCGTGGATTCGCGACAGCGTTTACGGGAATTGACAAGACGCTTGCTTGGAAGACTCACCGTCGAGACTTAGCAACTTCATTGCACAGGATTTAAAACCCTTATCGATGATACATGCTCAAAAACATCATCATAATAGGATAATATAAGTAGCCTACACTGATATTGGGCCGTTCTGGAAGAGAAAGTCATTTTTTTCAGACATTCGTGGACGGTAATAAAGTAATAGACATAGGTGAGTTTCATTATGGGGCGTTTCATAGGTTATTGTCACTGGTCTACTGtaagtactgtaatactgtaagcAAGATGTTTATATTCAGATTTCCCTTAATTCACATACTCCGAGTTTAACATTCTGCTTTTTGAAGATACACGTGGATTTAAATATGaacaatattttttgttgttgtcatcaaTTAAAGATTTTGTACTTTTTCACCTTTACTTTCAGTGAATGCCTCGAAACAAGGCAATGGACATGGGCAGGCAGCTGTTGGTAAAGATGCAGAGGACGAGGAAGGGCAAGTTCACGCCAATCCCTGTATTACCACAGGGCCTCGAGGTCCACTTCTACCTGCGAGACTCTCACCAGCTGGAGTTTCTCCGGGGTTGTTACACTGCTGAGGAGCTGTGCACAGAGGCAGCCAAGAAGTGTGGCATTTCACCTATTTGCTTCAATCTGTTTGCCTTGTATGACGAGGGCATGAACATCTGGTACCCTCCCAATCACACCTTCAAAATCGAGGAGAGCACTTGCTTAAAGCTCCACTATCGCATGAGGTTCTACTTCACCAACTGGCATGGTGCGAATGACAATGTGCCACGTGTTTGCAGACATGCCCTCAAGAGAAAGAACGGCAATGGGCCGAAGACCGAATCAGGGGGTACGGCACTCCTTGAGGCTGCCTCACTGAAGTATCTGTTTGCCCAGGGTCAGCATGACTTCCTGAAGGGGCGGGCCGCAGTGCGTAACCCTCAGAATGAAGAGGAGGCCCACTGTATTGAGAATGAGTGCCTGGGGGTGGCAGTGTTGTCTATCACACACAATGCCTTGGAGAAGAACATTGTCAACCCATATTTAGCAGGACAGATCAGCTATAAGAAATACATCCCAGAGAGCATGAACCAAATCATCAAGCAGCGGAACTTCCTGACACGACTCCGCATCTCCCGGGTGTTTCAGCACTTCCTTAACGAGTTCAACAACAAGACAGTGAAGAGCAACAAAGTCAACATCCATGACATCAAGGTCAAATACTTGGCTACGCTGGAGACTTTGACCTGTGGGTTCGGCTGTGAGATGTACAAGCCTGAAGTGCTACGTGTTACTGACAGCGAAGGGGAGATCGAAGGAACACCCACTTCCTGTAACCAGGGTCAGCCCACCCAGTACCAAGTCCTTGTGTCTGGAAATACAGGGATCAAGTGGCGGAGGAAGCAACAGAATAATGCATGGACTGCCAAAGAGAAGAAAAAATCAAAAAAGTACAAAACCGACATCAACTGGAAGAACAAACCAGCTCAAGACGTTTCGAATGACTGGAAAACCTTCTCTGATTTCTATGAGATTACACACATCAACATCAAGGGCTCCACAGTCACTGTCCACAAGCAGGACAACAAAAAGATGGAACTGAGCCTGGGTTTCCATGCAGAGGCATTGTCTTTTGCCACCCTCGTTGATGGATACTTCCGTCTGACAGTGGATGCACATCACTTCCTGTGTACAGATGTGGCCCCTCCCTCTGTGGTACAGAACCTGCAGGAAGGCTGTCATGGTCCAATCAGCATGGACTACACCTCCCACAAGCTGCGTCAGGAGGGCAGGGAGGAGGGCATGTATGTGCTGCGCTGGAGCTGCATCGACTATGACCACATCATCCTGACTGTCAAATGCAATGAAGCGGACCAGACCGATAGCCATCCGTACCGTAGCTTTAAGATCGAGGTGGGGCCGGAAGGCTACGGCCTGAGTGGTACAGCCCTGAGGCAGCCCTCTCTCAGGGAGCTGATGGAACAGCTGATTGGCCAGAGACTTAGCACAGACGGAGTCTTCTTCCAGCTCCGCAAGGCCTGCCCTCCGCAGCCCAGAGaaATGTCTAACCTGCTACTAGTGACAAAGAGAGATGCAGAGCCGATGTACCCCGTACAGAGTCATGTCATCTTCCACAAGATCCTCAACGAGGACAtagtgcagGAGGAGCACTTGGGCTGTGGCACCAGAACTAACATCTATGCTGGCAAATTTAAGATAAAGagtgaggaagagaaggatgtGTGGGGTTCCCAAACCTACCACGAGGTGAAAGTGGTCCTGAAAGTGCTAGGGTCCCAACACAGAGATATCTCtatgACTTTCTTTGAAACGGTCAGTATGATGCGTCAGGTGTCCCATCAACACATCACTCTGCTGCACGGTGTCTGTGTTCGCAACCATGACAATATCATTGTGGAGGAGCATGTGACGCTGGGTCCTCTGGATGTGTTCATGCGGGGACATCGTCTTGAACTCAGCGCCTCCTGGAAGTACCAGGTGGCCAAACAACTGACCGGCGCCCTCAGCTACCTGGAGGATAAGAAGCTGGTCCATGGCTATGTGTGTGCTAAGAACGTCCTAGTGGAGCGGGATGGCCTAGAGGGAGAGACTGGGCCCTTCATCAAACTGAGTAGCCCTGGGGTCTCCATCTCCGCACTCAAcatacaagAGTGTGTGGAGAGGATCCCATGGATCGCCCCAGAGTGTGTGAGGAACAGCCAGGCCCTGAGTGTTGCGGTGGATAAGTGGGGATTTGGCACCACACTGTGGGAGATCTGCTATGAGGGAGTTGCTCCTCTCAAGGACAAGAAACTCATAGAGAAGGAGATGTTTTACTCAGCCCAATGTTCCCTGGTGACCCCAGACTGCCCTCAGCTGGCTGAGCTCATCACCAAGTGCATGAACTACGACCCCAAGAGGAGGCCCTTCTTCAGGGCCATTGTCAGGGACCTCACTGGGGTGGCCGAGCAGAACCCAGTCCTGCCACCTAGTAGGGTGCCCATCCAGGAAGTGGACCCCACTGTGTTTGATACAAGGTTCCTCAGGAAAATTGATAACCTGGGAGAGGGTCACTTTGGTAAGGTGGAGCTGTGTCAGTATGACCCCCATGGGGACGGCCGAGGGGAGCTGGTGGCGGTCAAGTCTCTGAAGCCAAACAGCAAAGGCCAGCTGCCCTGCCACCTGAGAAGAGAGATAGATACCATGAGAGAACTGTACCACCACAACATTGTCAAATACAAAGGAGTGTGTAgcgaggaggGTGGGAGGACCACTAAGCTGATTATGGAGTACCTGCCAGCGGGGAGCCTGAAGGACTACCTTCCCAaaagaaaacaccagactgaccTCACGAGACTTCTCAACTACGCCCTCCAGATCTGCCAGggaATGGATTACTTGGGATCACAGCGGTTCATCCACCGGGATTTGGCGGCCAGGAACGTTCTGGTGGAGAACGAGAGCACAGTGAAGATCGCAGACTTTGGGCTGACCAAGAGCATGAAGGAGGACAAGAGTTACTACACTGTCAAAGAGGACACCGAAAGCCCTGTGTTCTGGTATGCTCCTGAGTGCCTGATGGGCTCTAGGTTCTACCCTGCGTCTGACGTGTGGTCTTTCGGAGTGACCCTCTATGAGCTGATGACCTACTGCGAGTCAAGCAGCAGTCCTGAGCCGGTATTTTTGAAGTTGCTTAGTCCAAGCGAGGGTAAGATGACTCTCACCCGATTGGTGGAATTTCTGATAGACGGCAAGAGGCTGCCATGTCCACCTCGCTGCCCAGACACGgTGTACTCTCTGATGAGGAGGTGTTGGGAGTTTGACCCGGCGAACAGGATCCAGTTCAAAGGCCTGATCACAGAGCTGGAGACGCTGCTGGACGAGAGGAACAGAGGACAGACTGGCTGTCTGAAGTGCTAGAGCTCACACATAGTTGGAAATATACAATAATataacatacactgagtataccaaaacattaggaacaccttcctactattgagttgctccccccacccctttttgccctcagaacagcatcaattcgtcggggcatggacccTGCAAGGTGTCGagagtgttccacagggatgctggcccatgttgactccaatgcttcccaaagttgtgtcaagttgtgtggatgtcctttgggcggtggatcattcttgatacacccaGAAAACAGGTTCTGCTTGAAAAAcccagcgttgcagttcttgacacaaaccggtgggcctggcacctactaccatacaccgttcaaaggcacttacatttctTGCACATCACCCTCCGAATGGCACAAATactcaatccatgtctcaaggcttaaaaatcattatttaacctttctccttcccttcatctacactgtttgaagggaatttaacaagtgacatcagtaagggatcatagctttcacctggattcacctggtcagtctgtcgtggaaagagcaggtgttcttaatgttttgaacacACAGTGTGTATGCCATTTAGCAAACGCATCTATCCAAATagacggatggatggatgaaaaggcagacaggctgacagacagactaATGTCAGttaacagaaacagacagacgcATGTTAGCACAgatggactgacagacagactgacattgACTACTACATTGACTACTACAGACATAAAAATAGTAATCTAGCACAGACAAACCGATCAACATACACATGCAccgacagaccaacacacagaaaGACGTAAACCATCactgacagacagaaagacacaccGAAAGCACAGGAAGGACAAAAGCTACATTTCTTTACAATACAGAAACACATTGCCCAGATGTGGGCTTGATGTATATACTTttccacatactgtacatacacagtaACTCAAACGTATTCTGACCTTCAAATGCATGCTGCTGTCATTCACTATGTTCTTTAGTACAGTAtttgtttctttctttttacAAGCTATTGATACACATTGTAAGTTAAATAGGACCCTTTTCGATAACTGAGTTAGTTCATTTTGTAAGGATGAAAGACATTGAGGCGGTAATTTGCGTTAGCCGACAAACAGATAACGTTTTTTTTAGCCGGTGTCAGAGGTGtaaccaatgatgtatataaaccctggattgctgatgctatgcaTTGGCCAAttagaggctttgaagccaccggttgggtatattggcactccccagaagaagcagtcctccataggaattcTATAGTATTTCCATTaattgtttcaaggacaaaattgcATGTATTTAAGTACTTTTCTTGTTGTATCGGGGACATTAACATGTGTATGTTTAGCTCAGATAATATACTTAAAAAGTATGCATCAActtgtctgtaatagaataaatgtGGCAACAAATTTATTCTATAGCTTCCAAGCTATTTTTTACAATGGTGGGGGAGTGCCCCCTGTCAGTCttctagtgtgtgtatatatatattattgggTGGAAATCTTACTACAAGCTCTACACAGGCGCAAGATTCGGAGTGTTGCAAAAAAGGGACGGCTCCTTATAATACGATGCTATTTACTGCCTGAAAATTGAGACACACTGTATCATTCCTTCCGCAGCTGTGGGGGTAGTGTTTGTCACTTGGTTCCTTGATCTAATCTGTAGGCTACAGAGGCTATTTATCATCACAGTAGCCCATTTTGCATTGAAATATATTCTCAGTGACTGTTCAAACAGTAAACCACACGACAAGAATCCACCCCAAAAGGCATTTTAGTTTAGAAGTAATAACTATTGATTCAGGCTATTGCGAAATGGTAGAACCTGCTgtagtcaactagctagccatgtgCATTTTTCTCTATTACCAAAACATGATGTTCTATTTTTAGCTGATATGGGAATGAATACACAAGCAGCATATCAAACTGGGATAATGTTTTAGGTTACACCGGCAAGTATACAAATATTTGCCAGGgcatattttttaaaattataaatctGATTATTTCACATGGAGATGTGGGAAGGTAAAAAGGCAAGCTAGCTTGAAATGTTTTAGCCAGGCTAAAGCCAGCTAGCCATGCTGCCAGCTAGCCATGCTGCCAGCTAGCCATGCTGCCAGCTAGCTACTACTAGCAAGGGAAGGCAATAGTTCCTTGCCTTCACAAAATGGAAAGACTAAAATATTAAAACTTTGCTATTGCCCCCTAGTCAATGGGAGTGGAACCGGTGAGGATATCATGTTAATAAAGTTGTCCGCTACTCCAAAAATCCCACTCCACCCACGTGTGTACACGTAGATCAACAGAGTAAAGCTTGTAGTAACCTTTAAACTTCAATAGCTTTCACCCCATAAttgattgaacctttatttaactaggctaatCAGTCAACTGTGTTAGAACTGTCAAATCTGTGAGCCCAATTGAGAAGATTATTTcacacattccagtgttcaaacTGCTGCATGGGATTTCTACTCATGATgcgactaggtgtgtccaatggCGATAGGTAACGCAGGGGACCCTTGTGGATTTGACACCTCTTAACGCAGTTATACCTCCGATAGCGCCTAAACTAAAGCAATGAAAAGCAATGCATTTGTTGGCTAATGCGGGTTACCGCTGATCTGATTTAAGCCTGGCCTGCATCTTTAAGGCATGCACTTTTAATATTATTTTAGAATACGCTAAGGGTTCTAATCTGCGAGAATATCTCCTACAATTTTGGGCCGATTTTCTTCATTTTAGGCTCATCGTCCCACATGGGATTATCCACTTCATATTCCGCTGTGTTTTGTATACATTTTCCTGGTTTATGTGTTTGGAATTGCACGGTTACTATTGCATTATCCTGCCAAAACTCTGAATCGATAATCACGTCATAAGGAATTCCCCTCGACCACGCCCAACAAATTGAGGGAAACAAACATTCTTTCCCATTGACCCCCATTGTAAAAGAGCCAACTTGGTTGTtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU816695 lncRNA downstream 29889 50297400 ~ 50383091 (-) False G718798
TU816694 lncRNA downstream 29889 50379782 ~ 50383091 (-) True G718798
TU816677 lncRNA downstream 161924 50250751 ~ 50251056 (-) True G718784
TU816676 lncRNA downstream 162864 50249858 ~ 50250116 (-) True G718783
TU816674 lncRNA downstream 171086 50241664 ~ 50241894 (-) True G718781
TU816849 lncRNA upstream 90687 50525475 ~ 50525714 (-) True G718945
TU816897 lncRNA upstream 136520 50571308 ~ 50571740 (-) True G718986
TU816835 lncRNA upstream 253452 50688240 ~ 50714007 (-) True G718931
TU816971 lncRNA upstream 279794 50714582 ~ 50714934 (-) True G719056
TU816969 lncRNA upstream 281371 50716159 ~ 50718605 (-) True LOC110530033
XM_021612772.2 mRNA downstream 46710 50337731 ~ 50366270 (-) True LOC110530016
XM_021612771.2 mRNA downstream 317051 50093497 ~ 50095929 (-) True LOC110530015
LOC118965625 mRNA downstream 426775 49983389 ~ 49986205 (-) True LOC118965625
XM_021612768.2 mRNA downstream 442898 49964914 ~ 49970082 (-) True LOC110530012
XR_005052890.1 mRNA downstream 526754 49881643 ~ 49886226 (-) True LOC118965522
XM_021612797.2 mRNA upstream 230843 50665631 ~ 50674317 (-) False LOC110530027
XM_036985586.1 mRNA upstream 230876 50665664 ~ 50674317 (-) True LOC110530027
XM_036985589.1 mRNA upstream 243384 50678172 ~ 50685211 (-) False LOC110530028
XM_036985587.1 mRNA upstream 243384 50678172 ~ 50685256 (-) False LOC110530028
XM_036985588.1 mRNA upstream 243384 50678172 ~ 50685258 (-) True LOC110530028
TU816422 other downstream 523728 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 575284 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1624018 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1630465 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1651817 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 502140 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 817567 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2326251 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3028394 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3063360 53498148 ~ 53499730 (-) True G722459

Expression Profile