RNA id: XM_036985574.1


Basic Information

Item Value
RNA id XM_036985574.1
length 6218
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC110530024
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50607401 ~ 50641183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAGCAGCATAATCACTCCCTCCAttgctctctatctctcagtCTGCCTCTCTCGCTAGCTTTGTGTTTTTCTCCTTTGCCTTTCTAACTCAGCATCCACCTCTCGTTGATGGCGTGTGTCAGTGCTGTTGGGGCGACTGGGGCCTAACGCGCTGGGCCCTTCCCCCGATTCTCTACACCTTCCCTgggcctctgtctctgcctcttccGTCGGCCCGACAGCCTGCCTGGCTACCTCCCCCACCCCCCGTGTGCTGGTGTCTGGGCTcaaggggtggaggaggagggagcaaCGACGTTCCGCTTCACTTGGGAGCGGTTCGGCAATTAGGAATGCCCTAGACCCGGCATCATTTAGCCACTTGGAATATCTCGGGTTCCTCCAtccgcctgtctgtctctatccatctGTTGGTCTCCCTCCATCCGTGGAGGGGGACAGAGGAATGAAAATCTGCAATCATGATGGAAGGACTGAAAAAACGTACCAGAAAGGCCTTTGGGTTacgaaagaaagagaaggatacaGATTTCACGGGCTCACCTGACAAAGATGGAGTAAGTGCGAGAAAGGTAGACTATGGGAAAAAGACCAACGGGGCTCCAAATGGCTATTATGGGGAGATTGATTGGGATCGATATGCAACTCCAGATGTGGATGCTGAGGGCTTCAGTCTCAGACCCGGAGAAGAGGGGGAAACAGCTCCCAAAGGCAAGCAGCACTTCTTGTCCTCCAGCGACTCTGAGGACGAGGACGACAAGAGGAAGTTCAAGATCAAGATCAAGCCGTTGCCTTCCGACACTGCCAAGTGTGCCGTCCCATCTATGGACGAACTGAAAGCTTCAGTTGGGGGCTTggctctatctccctctctgAGGAGAAGTCCGAGACGCAGCCCGGGCTCGATAAAGAGACACCTGTCTTGTGAGGAGATTGCCAGACCCAGACGCTCCACCCCTACGCCAAGCCCCGCCCCCGAGACACAAAGTGAGAGAGTATCCCAGAGTCGCAGAGCATCCCCAGCTTTCTACGGGCTTCCTCCGGAGACGACCTCTGAGGCACGCAGATATGATAGTAACAGAAATGATGGTGAAGAGATTGCCCGACCCATACGCTCCACCATTACGCCAAGCCCCGCCCTCGGGACACAAAGTGAGAGAGTATCCCAGAGTCGCAGAGCATCCCCAGCTTTCTACGGGCTTCCTCCGGAGACGACCTATGAGACACACAGATATGATAGTAACAGAAATGATGTGGTCTGCATAGAGGCCGATGCATGGTGTGACTCCAGACCATACCCTGACTCCCCTCTGACCAGATCCTTTCCCACAGGAGctcctcctccactgcctccCAAGAACATCCCAGCAGCTAGTCAAGGCTATTCTTTGACGGATTCTTCCGCTGATTTACCCAATGGGAGAATAGTCCCAAGCCCCAACCCTATCTACCTGAATGTCCAATCCCCAGCCTCGTACAGAGGTTCCCCTGTGCCTGACCTGGAAAACGTGTTCGGCCCCATGGAATCTTCCCAGACCAGTGAGGACAGGGCCTCGCCCCGATGGATCAGCTTCAACAGCGAGAGACCGCCCCCACCAGACGAACCGGCCCCGCCTCcgccctctgcctctcctccttccGACTCgccccactccctctcctccaccccagactccccctgcctctccccggGCCCCCCTCCGGATGagcctcccccctccccaccgcccttctcctctccccccgaCTCTCCCATCTCCATTATCTCTATTCCTCCTCCAGATGAACCCGTTCCTCCCCTGCCTCCCGACTTCTCTCCCGTGGACTCTCCGCCATGCATCGGCATCGATCCTAGTCTGTTTTTGGATGATGAGATACTGGGGTACTCCCCTGCTCCCTCTGGCTCACTGGAGTACTCCCCTGCCCCTACCAGTCCCATCCCTCCCCCCCTGCCTGTGGAGCGCTACCCTCGGACGGGTGTCCCTTCCCCTCTGGCGTTCCTGAGGGAAGAGCAGCCTGACTATATGGCCTCAGCCCTTGGGCTGACCCCGGGCTTCAGGGGCACGCCGCCCCCACTCCCCCCGCTCACCTACAGGTCCATGGTATCCTCCCCTGGACCCTGCCCAGGCAGCGGCCCCTCCTCTCCAGCTCGTCCTTCCACGCCCCTGTCAGGAGGCAGTCcaatccctccccctcttcctacAAGGCCCTCCTCTCGACCCAAACTGCCCCCTGGGAAGCCAATAGGAGACCTGACTCGATCCTTCAGCCCCCCAGTCTCCGGCAGCCCCCCTCCCTTCGCCCCCCTGGCCCGGGCCGAGAGTTCCTCCTCAatctcctccatcacctcattGAGCGCAGGCTCCACCCCCACCCTGGGGAGAGAACTCAACATATCCACCACAGAGGAAAAACAGCCAGCCATGGTATGGTTTGACCATGGCCGGTTTTATTTGTCTTTCGAAGgatgctCCAGAGGACCCAGCCCACTCACCATGGGAGCCCAGGACACTCTGCCTGTGGCGGCTGCCTTCACCGAGACCATCAACGCCTACTTCAAAGGAGCCGACCCGAACAACCGGCAAAGCGACCCTCATCAGAATAAATGCAACAAGTGTGTGGTAAAGATCACTGGGGAGATGGTGCTGTCTTTCCCTGCGGGCATCACCAGGCACTTTGCTAGCCACCCGTCTGCCCCCGTGCTCACCTTCAGCATCAGCAACTACAGCCGGCTTGAGCAGGTCCTCCCCAATCCACAGCTACTGTGCTGTGACACCACTATGTccaatgtggacaccaaggaattctGGGTAAATATGCCAAACCTGATGAGCCACCTGAGGAGAGTGGCTGACCAGAAGCCTCAAGCAACCTACTACAATGTGGACATGATCAAATATCAGGTGGCAGCCGATGGGATCCAGTCGACTCCCCTGAACCTGGCAGTGAGTTGGCGTGGCGACGCCACCAGCACGGATCTCAGGATAGACTACAAATACAACATGGAGGCCATGGCCgccccctcacccctccacaACATCCACTTCCTGGtccctgtggatgggggcgtgcacAAGCTTCAAGCCATGATCCCCACTGCTACCTGGAAACCAGAGCAGCAGAAAATTCTATGGAAGATACCAAGCCTTTCCCAGAGGTCTGAAAATGGAGGAGTTGGGGCTCTACTGGGTAGGTTCCAGTTGACAGAGGGTCCCAGTAAGCCGTCCCAGTTAGCGGTGCATTTCACCAGCGAGGGCAGCACTCTGTCAGGCTGTGACATCCACCTGGTGGGGACTGGCTACAGGCTCTCGCTGGTCAAAAAGAGATTTGCAGCagGGAAATATCTGGCGGACAACTAGTCACCACTGTTGTAAAATGACACCCTTTCACCCATACAATGGCTTTTGATTGTGAGGATGATGAGAGTTTACTACGGATTCCTCATTCAAGCTACCAACTGAAAAAACAACTGAAACCTTACACTTGAGCAGGGAAGGGTGGACGATGGGATAGAAGCAACAACAGGATGTGATGTAATTCACAAAGTTGACTGGAGTATCACTTTGTTTTAACACGCTCAATACAGTAGTCTCACTGTTGGGGTTTATGCAAGTAGTACAGCCCTTTTCCGTTCTGTGCACCTTGAGGGTTGTCGAGGCAAAGATAATGAATTCAACACTTACTTTTATCAAAGTAATTTATCATTGGCACCGCATACAGTAATCCAGTTTTATTTGTGAGAAGAAACGTGTGAATGGGTGATGATGAAAGATTCACTGGACAGATTTATGTGAAAAGATAGATACTGTTAACATTCATTGATAATTCAATAGATTATGAAAATAACTCCATTCGCTATGATGACATTAAGATTTGTATTATtttaggcttttttttttttttttcatttctcgGGTTGGTAAAACTAATATTGTACCAGCTGGTACTGTACCAGCAGGTTGAGGCCCACAACTTGTAGTCACCGTGGAAACATTATGTATGTGGTGGTTGTGTGTTTGCTGCGAGGTCAAGTGGTTAATGTAATGGTACACATTGTTTACCTGATTTGTGGATGACAAAAACAAAGCAGGCTGCCTTACAGGCTGGATAGTAGAGTTGCCTTGGACCAGAGAAATGACTGATCTGTTTGTCCCTTAGAGTTGTGTCCATCTCCAGGAGGCCTAACCAagcaaaactggttgaaatgacatcattGCAATGAGAAACTGTTTGAAATTACGCCGAAACTGGTTGAAATTCATTCTTTATGGCGTCAATTCAACCAGTTTGAACCAGTTTGGTCTCACTGGGAAGTATAACCGAAGGACATCAACGAAGATGGAAAAAGTGCTACAATAATTATTTATCCAAAATAGAATACTAATGTACGTATGTAATGGAAGCCCCTAATGTTATGTTTATTTTGTTGTTATTTTCCACCGTGTGGAGTAAATAGGTGTTTTATCATTTTCCAATAGCAATATATTGAAAATCAATTTGTAAAAAAGTGTAAATATGAAAGATGTTTCCCTTTGGACATATGGATGTTTCTGTGTATTGTCAAATAAGAGTTATGCTATACGGTGGTGTTAGCCTTCAGAATACATAACCATTTAAAAAATGCATCATTTCAAGTTTCATTTCGAACATGGATTTCTTGTAATATACTGTGACTGTCCATGGTttaaaaaaaacgaacaaaaaaacTCCAAAGGTACAGCATGAAATCTGCGTTACTCAAAAAGTTGTTTTTGGTTCCATTTTATTTCAAGACATTAAGGACGCACAGCAGCACACAATATGGAGTTGAAGACAAAAGATCCATCAAGAGTCGCCTCCTTATCCGATGCTATTCCaacctagcctggttaaaccaaaCAGTAGTGAACGTAGCATTCAGTCTCGTTTAACCAGGCTAATTCAGACCTACGCCTTTTTATATAGTAAGTGTACTATGTGATTGCCTTCACTGTAACTTTTAGTCACTTCATCGTGTTTGACCGTTCACCTAAAGCTTTGACCTTTGGCATGAATTCCAACAACATTGTCACACTTCCATGATATATTGCAGTTAATGTCCTCTTGTGTTTTCTCCTGATTACAGTACATGGGATTTTTAAAGGTGAACAACAGGGGGAACAGTCATTGATCATATCAATCAAAATCATTTTGGTTTATTACAAGAATTCAGGGAGAACATCTCCCGAGCAGAAGCCAAGAGACATTTCTAATTCCCCTTCTCCAAGCAGACCCTTAAATTCGAATCTGGTAGCACCGATGTCCTCTAAACAACAGCCAACAGAGGCTTCTACAAAGTCACGACAAAGGACAGTGACTTTTGCCAGCTGCTACAAAATCACACAATGTTCATCATGTCATCAATATAATATCTGTGTCTCCTCGGCTCAGTGTACCTCCAGTCTGACGTCAATCATTATCAACAATATGACTTTCATACATAACATCcagtctagtgaccatcaacctGTGATACAAACGAGTGTCACAAATAGAATACTTGAAATCATGTGTATTACATAAAAAGGCAACATATAAATATGCTAAGACTTGTGTTAATTACTCTTAACTGAATATTAACTTTATTACACCAACAACAAATGATTTTTGCATAACTAGAATTGTTATGCTCCTGCCCATCTCAAGGAGAAAATGTTTAGTGTATTATTTTATGCATTTTGACATCATTATAATATTAATAGCCTTACATTACCTCAGATGTTACTACTCATTTCCAAATCAATATATTCAAAAGAAGTCACAAACAATGACAAACATCGCTTTTTGTCCTTGATATTATCACTAACTATGGTAATATGACTTTTTTTGTCCTGGTTGCAAACGTTTATTTCTTTGTTTGAGCCTTACTGGTCCTTAAAAAAGAACGCACAATTATCAAACTTTTCTCCAGATATGTAGCAGTAGCAATTTATAAAGGTTTCAATAATGCTGACATGTTTTATTATTTGCCTTATTTTGGATTAGCATATTTCCAGCCAGTAAGAGACTTTctgtatgtttttgttctatgaaatatatttttttctgtctGTATTTTATTCACTGCATAGGACACATTTCATGTAAATTTCCCATCCAAAGATTTTAAgagtgaaaatataaaaaaaatgaatataaTGTGATAACTTTACCTGGTTTACTTGGTAATAAAGAATGGGAGAATATTGGAAATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU815899 lncRNA upstream 172718 50430922 ~ 50434684 (+) True G718053
TU815887 lncRNA upstream 191268 50414700 ~ 50416134 (+) True G718044
TU815808 lncRNA upstream 328431 50278709 ~ 50278971 (+) True G717970
TU815793 lncRNA upstream 364368 50242819 ~ 50243034 (+) True G717955
TU815792 lncRNA upstream 365377 50241653 ~ 50242025 (+) True G717954
TU815917 lncRNA downstream 32680 50673863 ~ 50679877 (+) False G718060
TU815915 lncRNA downstream 36770 50677953 ~ 50679877 (+) False G718060
TU815914 lncRNA downstream 37022 50678205 ~ 50685225 (+) False G718060
TU815918 lncRNA downstream 37022 50678205 ~ 50685225 (+) True G718060
TU816033 lncRNA downstream 49978 50691161 ~ 50692973 (+) True G718164
XM_036985564.1 mRNA upstream 28541 50443704 ~ 50578861 (+) False LOC110530023
XM_036985565.1 mRNA upstream 28541 50444053 ~ 50578861 (+) False LOC110530023
XM_036985566.1 mRNA upstream 28541 50505526 ~ 50578861 (+) False LOC110530023
XM_036985567.1 mRNA upstream 28541 50566775 ~ 50578861 (+) True LOC110530023
XR_005052893.1 mRNA upstream 165445 50434935 ~ 50441957 (+) True LOC110530022
XM_021612792.2 mRNA downstream 7535 50648718 ~ 50665624 (+) False mier1b
XM_021612794.2 mRNA downstream 7671 50648854 ~ 50665624 (+) False mier1b
XM_036985585.1 mRNA downstream 7677 50648860 ~ 50665624 (+) False mier1b
XM_036985583.1 mRNA downstream 7684 50648867 ~ 50665624 (+) False mier1b
XM_036985584.1 mRNA downstream 7684 50648867 ~ 50665624 (+) False mier1b
TU815871 other upstream 213566 50385546 ~ 50393836 (+) True LOC110530019
TU815524 other upstream 753210 49853387 ~ 49854192 (+) True LOC118965615
TU814748 other upstream 1060317 49546212 ~ 49547085 (+) True G716993
TU814604 other upstream 1273630 49332841 ~ 49333772 (+) True G716862
TU813841 other upstream 1846662 48760343 ~ 48760740 (+) True G716133
TU819925 other downstream 2736049 53377232 ~ 53377705 (+) False G721689
TU820195 other downstream 3029213 53670396 ~ 53671859 (+) False mrpl34
TU820196 other downstream 3029213 53670396 ~ 53671859 (+) True mrpl34
TU820345 other downstream 3285034 53926217 ~ 53927959 (+) True rps28
TU820675 other downstream 3982991 54624174 ~ 54670114 (+) True LOC118965528

Expression Profile