RNA id: XM_021612797.2


Basic Information

Item Value
RNA id XM_021612797.2
length 1611
RNA type mRNA
GC content 0.41
exon number 13
gene id LOC110530027
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50665631 ~ 50674317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCCCTCTGACATCGTCATGACGTAGTATTTAGTGAATTATGGAGGAAGTTCGGAAACGTCAACATGTGCAAATTGAAGGGAAAACCTCGGATAAAAGCTCAGTATCCAAGAATGACAGTAAAGGGATGACGAGCGGGAGGTCAGCCGTGTTCCTGAAGCTTTTCGCTGCCGGATTTTACGGCCTGAGCTCGTTTTTAATCGTAGTTGTGAACAAAAGCGTCCTCACCAGTTACAGATTCCCCTCATCAACATGTGTTGGGATCGGTCAAATGCTGGCCACAGTACTAGTACTAGGAGCTGCAAAGTCAATAGGTGTCATCACGTTTCCAGGTTTGGACAGGAGCATCCCAAACAAGATGTTTCCCCTACCGCTTCTGTATGTTGGGAATCAGGTATCAGGACTTCTAGGAACCAAGCGACTCAATTTACCCATGTTTACAGTTTTAAGAAGATTCTCTATTTTGTTAACCATGTTGGCCGAGGGAATCCTACTGAAAAAGACATTCTCTGGGCCTATCAAGGCAACCGTGTTTGCCATGATCTTTGGAGCCTTTGTAGCTGCGAGCACGGATTTGGCCTTTGATCTTCAAGGCTATGTTTTCATAATGCTCAACAACGTTCTGACTGCAGCCAATGGGGCCTATGTGAAGCAGAAACTTGACTCCAAGGAGCTTGGCAAATATGGGCTGCTCTATTACAACGCTTTATTTATGATCATCCCTACCGTGGCATATGCACATTTTGCCGGGGATCTACAAATGGCATTGGAGTTTGAAGGGTGGTCGGACATGCTGTTTTTGTTCCAGTTTGTGCTTTCCTGTGTTATGGGCTTTGTTTTAATGTACTCCATTGTGCTTTGCACTCAGCATAACTCTGCATTGACCACCACCATAGTGGGCTGTATTAAAAATATTTTAGTCACTTATCTTGGTATGGTCTTTGGCGGAGACTATATTTTCACCTGGGTCAACTTCATTGGATTAAACATCAGCATTGCTGGCAGTCTGGTGTACTCCTACATCACATTCACTGATGAACAATCAAAAAAACCTTAATGGGGGTGCCACTGGAAGGTTGGAGCTGGACTTTGTAAGACGTGTGTCGAACATTTATTTGGCCACTATTTCAACATATTCTTAATCATCATCAGCAAGACTGAATCAGTGTTATTGAAGATTTGTGCCTAATCAAGTAAATGCAGTAACTATGGCTGGAATTCAATAAGACACACAGTACTGTAAATGTTTTTTCCTCTTGAGCCAACATCTATAGTGTTTAGCATGAATGCTTTCTCCACAAACCTCTGGGAAATTGCATTTTGTCGGTTCTGCAATGTGCCTCTGATTCTCGAACCTGtttattcaaaaatgtttttgtgAACCTAATTTCTAAGCAAAGCGCTTTTCCTTTTTTTACTATGTTCAACATTGTAAGGTCCAACATTTTAAACCTCATGTTGGTTACATGCATATTTGAAATATTGCTAGGTTTAATTTCCTGTCACACTGatgaaaaatgtatgaaaactcCCCCACATAATTCAAATCAATTTATCATTAAAGTGCCTATTTTGCAGTTAGGCCACAGTAAAATCATGAAATAACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU816897 lncRNA downstream 93891 50571308 ~ 50571740 (-) True G718986
TU816849 lncRNA downstream 139917 50525475 ~ 50525714 (-) True G718945
TU816731 lncRNA downstream 212798 50357313 ~ 50452833 (-) False G718834
TU816732 lncRNA downstream 212798 50357313 ~ 50452833 (-) True G718834
TU816695 lncRNA downstream 282540 50297400 ~ 50383091 (-) False G718798
TU816835 lncRNA upstream 13923 50688240 ~ 50714007 (-) True G718931
TU816971 lncRNA upstream 40265 50714582 ~ 50714934 (-) True G719056
TU816969 lncRNA upstream 41842 50716159 ~ 50718605 (-) True LOC110530033
TU816983 lncRNA upstream 59760 50734077 ~ 50734533 (-) True G719068
TU816994 lncRNA upstream 61942 50736259 ~ 50736862 (-) False G719069
XM_036985563.1 mRNA downstream 230843 50412980 ~ 50434788 (-) True LOC110530021
XM_021612779.2 mRNA downstream 230844 50412980 ~ 50434787 (-) False LOC110530021
XM_021612772.2 mRNA downstream 299361 50337731 ~ 50366270 (-) True LOC110530016
XM_021612771.2 mRNA downstream 569702 50093497 ~ 50095929 (-) True LOC110530015
LOC118965625 mRNA downstream 679426 49983389 ~ 49986205 (-) True LOC118965625
XM_036985589.1 mRNA upstream 3855 50678172 ~ 50685211 (-) False LOC110530028
XM_036985587.1 mRNA upstream 3855 50678172 ~ 50685256 (-) False LOC110530028
XM_036985588.1 mRNA upstream 3855 50678172 ~ 50685258 (-) True LOC110530028
XM_036985590.1 mRNA upstream 16030 50690347 ~ 50710414 (-) False hsd17b7
XM_021612799.2 mRNA upstream 16030 50690347 ~ 50710421 (-) True hsd17b7
TU816422 other downstream 776379 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 827935 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1876669 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1883116 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1904468 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 262611 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 578038 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2086722 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2788865 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2823831 53498148 ~ 53499730 (-) True G722459

Expression Profile