RNA id: XM_036985593.1



Basic Information


Item Value
RNA id XM_036985593.1
length 3894
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110530033
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50716128 ~ 50729934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAGCACTTGGCTGCTCAACAGAAGCCTGCTCTAAACTAGCTCCCTTACAGCTCTCCAGGCCATAATTGAAACCTTATGTGCATCAGGTGGAATTCTGGGGCTTTTTGGCGTCACACCAAAGAATCCCAGAGtgtgttatttttatttcattttttttccccATTTCTCTTTCCTCTAGTGAGAGAGCTTGCTTTTACATCAGCCCTTTTCCTCCTTCTTTCTCAGAAAGTCTATCCCGGGAAGAAAGTATATTACAGTGTAATAGACTTTGGAATAATTTTATCCAGTCGATTATGGAATAATATTCCCCTGGACTACTAAGGATTTTGGGAAGGCAGTGAAAAGTGTTCAGCTCCTGCCTCTGAGATGAAGGCTCTACAGATAAGACATTGTCTCCTGCTATTCCTCCTCACTGCTGTAAGGACCCAAGTCAACCCAGGTGTGTGTCGGTATCCTCTGGGTATGACTGGAGGACAGATTCTTGATGAGGATATCTCTGCTTCTAGTCAGTGGTCAGAGTCTACAGCAGCAAGATATGGCAGatTGGACTTTGACGATGGAGATGGTGACGGGGCATGGTGCCCTAACATCATGGCAGAGACGGACGCAGGCGGCCCGAAGGATTTCCTCCAGGTGGACCTGCGTTCGCTGCACTTCATCACGCTCGTGGGCACCCAGGGTCGCCACGCCGACGGCATGGGCAATGAGTTTGCCCAGCGCTACCGCATCAAGTACAGCCGTGACGGCAGCCGCTGGGTGGCCTGGCACGACAGGAAAGGCAGGCAGGTGATCGAGGGGAACATGAATGCCTATGACGTGGTGCTGAAGGACCTAGAGCCACCCATCATTGCCCGCTTCGTACGCTTCATGCCAATCACAGACCACTCCATGATCGTGTGCATGAGGGTAGAGCTCTATGGCTGTGAATGGCTAGATGGCCTGGTGTCCTACAGTGCTCCGGCCGGCCAGGAGATGACCTACAGAGGCCTGGACGTCCACCTCAATGACTCGGTCTACGATGGATCCATGGGTCTACAtaTGGAGGAAGGCCTGGGCCAGCTGACTGATGGGACGTGGGGTCTTGATGACTTCCTCCACAGTCACGTGTACGGCGTGTGGCCCGGATACGATTATGTGGGTTGGACCAATGAGAGCTTCCCTAAGGGCTACGTGGAGATGACCTTCGAATTTGACCGCGTCCGCAACTTCACCTCGATGAAGGTCCACTGCAATAACATGTTCAGCCGTGGCGTGAGAATGTTTCGGCAGGCCTCGTGTTACTTCCGTACGTCCGAGTTGGACTGGGAGTCCCAGCCAGTGTCCTTACGTCTCCCGGTGGACCAGGTCAGCCAGAGCGCCCGGTTCATCACCGTGCCCCTGGGGGACCGCATGGCCAGTGCCATCAAGTGCCGCTTTGCCTTCAACGAGGCCTGGATGATGATCAGCGAGGTGGCCTTCCAGTCAGCAGGGACAGCAGTTTATAACACATCTCCGACTCCCCGCAAACGTGGCCACCCGACAAATGTTATTCCAGGAGATGACCCCATCCACAAAGTGGATGAAAGCAACACCCGGATCCTGATTGGCTGCCTGGTGGCCATCATCGTCATCCTTTTGGCCATCATAGTCATCATTCTGTGGCGCCAGGTCTGGCAGAAGATGCTAGAGAAGGCTTCGCGACGTATGCTAGACGACGAGCTGTCGGCCCGTCTGGCCGTCCAAACCCAGGCCTTCTCTTTCCACCACTCGTCCCAGTCCAGCGGGGAAGGCTCCAACTCCACCTACGAGAGGATCttccccctctgctcctctgaCTACCAGGAGCCCTCCCGCCTCATCCGCAAGCTGCCCGAGTTCGCCCAGTCCACTGAGGAGCTGGCAGGGACTAGCTCCTCCTCCAGACCACCCCAGGCCTGTGGATCAGACGGGGCTCCCCACTATGCCGAGGCAGACATTGTGAGCCTGCAGGAGGGGACTACGGGCAGCAACACCTACTCCATCACGGCCGTCAACATGAGTCTGCTCTCTGGGAAGGACACGGCCATGAGGGAGTTCCCCAGGGACAAGCTCACCTTTAAGGAGAAACTGGGAGAGGGACAGTTTGGAGAGGTGCACCTGTGTGAGGCCGAGGGCATGCAGGACATTGTGGAGAAGGATCTGTCTGAAGAGGTCAATGACCGTTCAAATGAGGTAGAGGGCAGCGATGACACACCTATTCTGGTGGCTGTGAAGACACTGAGGGAGGACGCCAACAAGAACGCAAGGAATGACTTCCTGAAGGAGATCAGGATCATGTCTCGGCTGAGGGACCCTAACATCGTCAGCCTGCTGGCAGTGTGTGTGGAGAGCGACCCCCTCTGCATGATCACGGAGTACATGGAAAATGGAGACCTTAACCAGTTCTTGTCCAGCCATCAATTGGACGAAGTGGAGGAGATACAATCTAGTGACAAAGCCACGGTCAGCTATAGCAACCTGATGAGCATGGCTACACAGGTAGCCTCTGGGATGAAGTACCTGTCCTCTCTCAACTTTGTCCACCGCGACCTGGCCACGCGCAACTGTCTGGTGGGCAAGAACTACACCATCAAGATCGCTGACTTCGGCATGAGCCGGAACCTGTATCGCGGTGACTACTACCGTATCCAGGGGCGGGCCGTTCTTCCTATTCGCTGGATGTCATGGGAGAGCATCCTATTGGGTAAGTTCACCATGGCCAGCGACGTGTGGGCTTTTGGTGTGACTCTGTGGGAGATTCTGACCCTGTGTGAAAAGCAGCCCTACTCGCAGTTTTCCGACGAGCAGGTCATCGAGAACACTGGCGAGTTCTTCAGGGACCAGGGCAAGCAGGTGTACCTGCCGAGGCCTGCCTGTTGCCCTGATGCGGTCTATAGCAGCCTGATGCTGGGTTGCTGGAGGAGAAATGCCAAACAGAGACCCACTTTTCAGGAGATATACAGCCAGCTTGGGGAGAGCCAGGAATAGCAGCTCATATATAGACCATGATTATATAAAGTGCTCTGGGGTAAAagttcccctaggtacagatctaggatcagcttcccctgcAAAACTAACTGAAGATCAGCGTTTAGGGGCAACTTTATCCTACACTTCACCCTTTTTTGTAACATGGACCAACATCTATGGTCCTTCTACATTTAAGGGACGGCAAAGTATGGTCCTTCCTCCTTTGAGGAGCCCATATATTAGAACTAGCACGTGAGAACTGACTGAAAACTGCATGCAATgttctattcatctctctctcagcctttTTCTCTCTCAATTTGAGTTGACTCCCTATATCTCTATTTGCCAGAGCCATGTATATttatattaacaatgtctattgCACACTATGaaaacaccatctctctctccctctgtctcgctccatctctctctctctctctctcgctctctcaatcacAATCTAGTTTTTAGCGTGTGggacagttctgtaaaaaattaTTCGTTATGTCTGTGATGATAAAATGTAGAAATGCTGTGTCAGATCGTGCACACCAGGAAATGTAATGTTGTTTATAATCTTCTATTAtgaagataataataataataataataatgtgtagAAAATCTCCTTTTGGACTCAGATATTCAAGAATGTATCTGTTTGATATGTTTTTCTTTATTCATTTGATGTTGTGAAATGTGTTGTATTTTGTCAAAGATAAATAGGTCCTTTGAGTTAAATTTGTGCTTTGAAATAGTGCAACTTCATGCTTAACCTGCATTTCTATTGTTCGTGCAAGTTTTATACTCTAATTAGACAGTAGGCCTACTTATGGTTTCAATTAATTTACTGAACATTCTTCAACGTTCAAAACAATTTTAAAAACTTTAAAatgttcaaataaaaaaatatgatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU816971 lncRNA downstream 1194 50714582 ~ 50714934 (-) True G719056
TU816835 lncRNA downstream 2121 50688240 ~ 50714007 (-) True G718931
TU816897 lncRNA downstream 144388 50571308 ~ 50571740 (-) True G718986
TU816849 lncRNA downstream 190414 50525475 ~ 50525714 (-) True G718945
TU816694 lncRNA downstream 333037 50379782 ~ 50383091 (-) True G718798
TU816983 lncRNA upstream 4148 50734077 ~ 50734533 (-) True G719068
TU816994 lncRNA upstream 6330 50736259 ~ 50736862 (-) False G719069
TU816988 lncRNA upstream 7159 50737088 ~ 50738316 (-) False G719069
TU816985 lncRNA upstream 7443 50737372 ~ 50737942 (-) True G719069
TU817048 lncRNA upstream 88853 50818782 ~ 50818987 (-) True G719114
XM_021612799.2 mRNA downstream 5707 50690347 ~ 50710421 (-) True hsd17b7
XM_036985590.1 mRNA downstream 5714 50690347 ~ 50710414 (-) False hsd17b7
XM_036985588.1 mRNA downstream 30870 50678172 ~ 50685258 (-) True LOC110530028
XM_036985587.1 mRNA downstream 30872 50678172 ~ 50685256 (-) False LOC110530028
XM_036985589.1 mRNA downstream 30917 50678172 ~ 50685211 (-) False LOC110530028
XM_021612801.2 mRNA upstream 11047 50740976 ~ 50767911 (-) True LOC110530034
XM_021612802.2 mRNA upstream 61291 50791220 ~ 50793594 (-) True LOC110530035
XM_021612804.2 mRNA upstream 104611 50834540 ~ 50848805 (-) True LOC110530036
XM_021612807.2 mRNA upstream 302636 51032565 ~ 51038079 (-) False LOC110530040
XM_021612811.2 mRNA upstream 302636 51032565 ~ 51038079 (-) False LOC110530040
TU816422 other downstream 826876 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 878432 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1927166 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1933613 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1954965 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 206999 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 522426 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2031110 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2733253 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2768219 53498148 ~ 53499730 (-) True G722459

Expression Profile


XM_036985593.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.15.
End of interactive chart.

XM_036985593.1 Expression in each Bioproject

Bar chart with 5 bars.
XM_036985593.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2.
End of interactive chart.