RNA id: XM_021612804.2


Basic Information

Item Value
RNA id XM_021612804.2
length 3235
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110530036
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50834540 ~ 50848805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTGCTCCCCCCTCCATCATTCACACAACTGATACTGCAAGAGGGAGGCAGCAACTGCCTGAGCTTAGGAATTGAACCCCGATAACGAATGATCAGGCTATTTGTGCACCCGATGTAGGAATTTTAGGGGTTACAAATTAAATTAGTAAGTGTTAAATTAAAAATAAGGAAGTTGAAAGAACGCGTATTCAATTCACTGATTGTGAATTATTGTTTTTGACCGCAATTTTTTTACTCACTTGTTTGAGGCGGACGCCCAGAGTTCTTCCCCTTCTGTTTTGAGGCTTAAGTTGTTGCGCAAGGCAAATGTGAGATCCACCTGCAATCTACAGAGGAGTCTGCAATCTACGGAGGAGCCTTCCAATATTTGGATGTATGTGCTCTGGAATATAAAGTGGTTTATTTTCAGAAGGCAGGAAAAATAAACGTTTTTCCCCCTTGATTGGTAATTCAGCCTCGCATCAATTCTTACACGGGCAGTTGAGCgaatttatttcatattttgacCACACGGAAAATGAAAATATCTTTTATCAGGGCTCGTGCAACCTCGAGATCTCTTTGAttcattaaaaataaacataattGGTCTCCACACTTTCAAAAATCAGGACAAGGGCAAAGTCCGGAGAGGATGAGGAGTCGCTGGGTGAAGCATGAGCTGCCAGGGTATCGGTCTTAGACAGGTGCCTGTGCTGCTCTTATGGGAGGGGGTCGCTCTGGGCCTGTTCTGCTGCTGGACTTGGGCTGGGGTTGCTGCCGCCGCGGCCGGACCCAGTGATGGCGGTGGTGCTGGGCCCATGGGCTGGCTGCTGTCGGACAAAGGGCCCTTCCACAATTCCCTGGAGTTCACGGAGTCTGTGGAGAGACACCAGCAAGGCTACACCACCAGATACAAGATCTACAGGGAGTTTGGCAGATGGAAGGTCAACAGCCTGGCGGTGGAATGGCGTGACAACAGTGGCGGCCTGGCTCCGCCCCTCGACCCTGACTTCATGCACACGGTCAGGCAGCTTGGGAGGCGGCCCACACTCCGCAGGATCACTGAGAAAATCATCAAGAAGTACGGGACTCACCTCCTACTGTCCGCCACGCTGGGAGGGGAGGAGTCCTTGACGATATTTGTGGATAAGAGGAAGCTAAGCCGCGACCCGGAACAATGGGCTGGAGCTGAGGGCAGCAGACACAATGGTACGGGGGCCATGGCAGGGGCGGTGACCCTGGAGGCCCTTCACCAGCTGGCTGCCTCCTACTTCACCGACAGGGAGAGCACTCTGCGCCGGCTCCACCACCTCCAGATTGCCTCCACTGCCATCAGGGTGACTGAAACCAGGACGGGCCCGCTTGGATGCAGTAACTATGACAACCTTGACTCTATCAGCTCAGTACTGGTCCACAGTCCAGAAAACAAGATCCAGTTACAAGGACTCCAGGTAATTCTACCAGCCTACCTGCGGAGCCGCTTCGTCCAGGCAGCCCTCAGCTACATCGGCTGTAACTCGGAGGGCCAATTTGTTTGCAGGGCCAGTGACTGCTGGTGCCAGTGCGGCCCGGACTTCCCACAGTGCAACTGTCCACAGACGGACCTCCATGCCCTGGAGAACAACCTACTGCGCCTCAGGGAGGCTTGGACACTGGCCAACCAGGAGTTTGTGGAATCAGaGGAGTTCCAAAGTTTTGTTGGAAGGTTGCCAACCCATTACGCCGTGAACACATCTGTCGTGGAGCACTTGTGGAGGATGGATGGGGGTCTGCTCCAACGCTATAGGCAGCTGGAGACCACGAGTGGCCTGCTCCTTGACAAAGCACGTCGCGCCGCTAACAAGCTCTTCAGTCTTAGCAAGAGATGCCGCCATCGGCCCAGGATAGTGCTGCAGAGGGAGAGACCCCTTCGCTACTGGCTGAGCTACATCCTGTCCCTTCTGTACTGCAGTGAGAATGACCACATCGGCCTGTACTCTGTGGAGACCCGCAGCTGCTCCtgcccctacctccacccccccTGCCAGGGCCCCGTCCCCTGCTCAGTAGGAGAGGGCCCCCGCTGCACCTCCTGTTCCACTGAGAACCGCACCCGCTGCTCCAGCTGCAACCCGGGCTTTACCCTGGGCCAGGGGCTGTGCCGACCCGCCGTGCCTGACCCCACggacccctacctgggcttggaGAGCGACCGCGACCTCCAGGACCTGGAGCTGTACTACCTGCTCCAGCACCGGGACCCGCGCATCACCTTGCACGGCATCTTCGTCAGCAACGACGTTCGCCTCAACTCCTGGTTTGACCCGTCGTGGCGGAAGAGGATGCTGCTGACCTTGAAGAGCAACCGCTACAAGTCCAACCGTGTGCACATGCTCCTGGGGGTGGCGCTCCAGGTGTGCCTGACCAAGAACAGCACGCTGGAGCCTGCGCTGTCCGTGTTTGTCAACCCATTCGGGGGCAGCCACTCGGAGAGCTGGACCATGCCCATCGGCCAGCACGGCTACCCCGACTGGGAGCGGACCAAGCTGGATATCCCCCTGGACTGCTACAACTGGACCTTGACGCTGGGCAACCGGTGGAAGAGCTTTTTCGAGACAGTGCATTTCTACCTGAGGAGCCGCATTAGGGATTCGGTGCCAGGATTGGCTCCAGGGCCAGAGGTTAGGGGACACAGGAACGCTAGTACAGTGTACCTGGAATCCCCAGAGGGCACCGTGGACCCAGTGGTAGCATCTTCATCCCAGAACATGGGCTACATGAAAATCAACAGCATGCAGCTGTTTGGATACAGCATGCACTTTGACCCGGACACCATCCAGGACCTGATCTTGCAGCTGGACTACCCGTACACTCAGGGATCCCAGGACTCGGCCCTGCTGCAGCTGGTGGAGATCCGCTACAGGGTCAACCGACTCTCTCCTCCAGGGGCTCAACCGATGGACCTGTTCTCATGTCTGCTCCGTCACAGACTGAAACTGTCCAGCTCTGAAGTGACCAGAATACTGGCTTCCTTACAGGCTTTCAGTGCCAGACAACCAAACTCTGTGGAGTACGAAGCAACCAAACTATGTAGTTAATAATGAGCGGTGGGCAGGGCCAATGTGATGTTTTTTGTATtaacccaatcagagacaatgtctGCCACATAGCTTATAGATTTTGTCCAATGGGTCCATTTGTGTCAGTGTACACTGTTCATGGCTTTAGTTGTATGTAAGTGTCATTAAATTTGATGTTTTGAATCACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU817048 lncRNA downstream 15553 50818782 ~ 50818987 (-) True G719114
TU816988 lncRNA downstream 96224 50737088 ~ 50738316 (-) False G719069
TU816985 lncRNA downstream 96598 50737372 ~ 50737942 (-) True G719069
TU816994 lncRNA downstream 97678 50736259 ~ 50736862 (-) False G719069
TU816983 lncRNA downstream 100007 50734077 ~ 50734533 (-) True G719068
TU817144 lncRNA upstream 106664 50955469 ~ 50957241 (-) True G719202
TU817152 lncRNA upstream 150589 50999394 ~ 51075009 (-) True G719208
TU817159 lncRNA upstream 206591 51055396 ~ 51067386 (-) True LOC110530040
TU817200 lncRNA upstream 232928 51081733 ~ 51082025 (-) True G719250
TU817202 lncRNA upstream 235438 51084243 ~ 51084510 (-) True G719252
XM_021612802.2 mRNA downstream 40946 50791220 ~ 50793594 (-) True LOC110530035
XM_021612801.2 mRNA downstream 66629 50740976 ~ 50767911 (-) True LOC110530034
XR_002474474.2 mRNA downstream 104606 50716128 ~ 50729934 (-) False LOC110530033
XM_036985594.1 mRNA downstream 104610 50716128 ~ 50729930 (-) False LOC110530033
XM_036985592.1 mRNA downstream 104611 50716128 ~ 50729929 (-) False LOC110530033
XM_021612807.2 mRNA upstream 183760 51032565 ~ 51038079 (-) False LOC110530040
XM_021612811.2 mRNA upstream 183760 51032565 ~ 51038079 (-) False LOC110530040
XM_021612808.2 mRNA upstream 183760 51032565 ~ 51067619 (-) False LOC110530040
XM_021612810.2 mRNA upstream 183760 51032565 ~ 51067620 (-) False LOC110530040
XM_036985599.1 mRNA upstream 183760 51032565 ~ 51067801 (-) False LOC110530040
TU816422 other downstream 945288 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 996844 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2045578 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 2052025 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 2073377 48759912 ~ 48761163 (-) True G716463
TU817090 other upstream 88123 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 403550 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 1912234 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2614377 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2649343 53498148 ~ 53499730 (-) True G722459

Expression Profile

XM_021612804.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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XM_021612804.2 Expression in each Bioproject

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XM_021612804.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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