RNA id: XR_005052895.1



Basic Information


Item Value
RNA id XR_005052895.1
length 1147
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110530040
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51032565 ~ 51067801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTAATATTCCCGAATGGAGTTATTTGTAGCTGTAGAATGAGAAAGCGAATGCAATGCAGCCTTAATTAAccctagctagctagactatcttcgTGAAGGGGGTAGCTGCATCCCAATATGGCGACCGGTTGTGTCGAAATAAGTGGGTGTATGGAAAGCGAATCGGTCCGATTTGTTGGCACTCAAGACTGTTTTGCGTGGCAGATGGACTAGTCAATAACCCGGCGGTCAGTGCTCAATCTTCTAGTTTTGTGCCTGCCGACTCAAAGTTCTTCGTACTGTGTATAAATTGATGGTCGTGTCGCCGGTGCGGTGGTAACTACGTGGCCATTTTCTCTCGCATTACTTTATTTCAAGTAGGTTAGAAGCCTACACAATAAATAACTAATATTTATAACAATCTAGACTGTAATACATAGTCTACTACGGCAACAACCGGAGCAGTGCCCTTTACTCCTGCTTGGAAAGTAACGGTAACGGAATGGAAAGTACCTACCCAGAGTGAAATACCCAGATTTTTTCCTGCTCAGATCATGAGGGAAGGAAAAACTTCCAAGTCCAAACAGAAACCCAACTCTGCATGGTAAAGAAAGCTTAAGGAGATTTAAACTGCAACACAGACGATACACTTTCCGTCTACCAACTTTTATTAACCATTTGCATTGTGAACACATCAAATAAAGCAATGTCCATCATTCCTTTCATTTGCACAACACCAACTAAAAATAACTAAAAATCTTTACATCGTCATGTAGTGACCAAAGTGGTGCGCAGTTGCCCAAAAAAAAAAGCTGCAAATATTGGAATTTACTGTCGAACATTTGAACCCATCTATCACTGAATCATTAGCTTTGTTATGCATCAAGAAAAAGATACCTAGCTTCTTTGATCTTCAAAGTCTGGCTCATATATCATCATATATACATTTGGATCGCATGGCACGTCACTCAGATGCTCCTTGGCTATAAGACTGCATACCTATGCGCTTTCAAACTAGGATTCTGTCCCaaattgcactctattcccttcatagagcactgtagtgcactatttaggaaatagggtgccatttcggaagCACTTAGTAAAAAAGTAGAGACAAATGTTCCTATCGTAAGGAAGTAAAAACATCAGAAAATGAAACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU817144 lncRNA downstream 109066 50955469 ~ 50957241 (-) True G719202
TU817048 lncRNA downstream 247320 50818782 ~ 50818987 (-) True G719114
TU816988 lncRNA downstream 327991 50737088 ~ 50738316 (-) False G719069
TU816985 lncRNA downstream 328365 50737372 ~ 50737942 (-) True G719069
TU816994 lncRNA downstream 329445 50736259 ~ 50736862 (-) False G719069
TU817200 lncRNA upstream 14084 51081733 ~ 51082025 (-) True G719250
TU817202 lncRNA upstream 16594 51084243 ~ 51084510 (-) True G719252
TU817203 lncRNA upstream 16865 51084514 ~ 51084723 (-) True G719253
TU817205 lncRNA upstream 27727 51095376 ~ 51095650 (-) True G719255
TU817213 lncRNA upstream 37998 51105647 ~ 51105861 (-) True G719262
XM_021612807.2 mRNA downstream 28228 51032565 ~ 51038079 (-) False LOC110530040
XM_021612811.2 mRNA downstream 28228 51032565 ~ 51038079 (-) False LOC110530040
XM_021612804.2 mRNA downstream 217502 50834540 ~ 50848805 (-) True LOC110530036
XM_021612802.2 mRNA downstream 272713 50791220 ~ 50793594 (-) True LOC110530035
XM_021612801.2 mRNA downstream 298396 50740976 ~ 50767911 (-) True LOC110530034
XM_021612813.2 mRNA upstream 59965 51127614 ~ 51189612 (-) False LOC110530042
XM_021612816.2 mRNA upstream 184706 51252355 ~ 51259056 (-) False LOC110530043
XM_021612817.2 mRNA upstream 184706 51252355 ~ 51259060 (-) False LOC110530043
XM_021612815.2 mRNA upstream 186516 51254165 ~ 51259061 (-) False LOC110530043
XM_036985600.1 mRNA upstream 248645 51316294 ~ 51323226 (-) False LOC110530045
TU817090 other downstream 126836 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1177055 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1228611 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2277345 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 2283792 48782121 ~ 48782515 (-) True G716480
TU817704 other upstream 184706 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 1693390 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2395533 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2430499 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2735794 53803443 ~ 53856065 (-) True G722602

Expression Profile


XR_005052895.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XR_005052895.1 Expression in each Bioproject

Bar chart with 17 bars.
XR_005052895.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.