RNA id: XM_021612813.2



Basic Information


Item Value
RNA id XM_021612813.2
length 5032
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC110530042
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51127614 ~ 51189612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATGCTCAACAATGGGACGACTTTGAATAATTAGCCTATATAGCTGCTTCCTTGTTTTCCAAATAATTAAACCATATTTTTGTGATGGATGCAGTCTTTTCGAGAGCTTGGAATAAGGATGCACGACTGAGTGCAACAATTGATTTGAAACATTGTTATAAAAGTGTACATTTTTAGATCTGGATTGAGCTTTTGTTTCAACTGATGTAGCTACAGCTAAGGAGAACTATGGTTGATTTGGAGAGCGAAGTACCCCGTCTTCCCCCGAGGTATAAATTCAGGGACTTACTCCTCGGGGACCAGAATTTACTAAATGATGACAGGGTGCAAGTTGAATTTTATGCCAATGAAAGTACTTTCAAAGAGACACTTAAACTGTTCTTCATCAAAAACCAAAGATCAAGCCTGAGAATACAAGTGTTTGACTTCTCCCTAAAGGTCCTGAGCTGTATCTTATACATGTGTCGCGTATTGACAGATGACCCATCCAAAGGACATGGCTGGTCTCCCATAATGTGGGTCGAACGAAGTCTTCTAATATGGCCGTTACAGGTGTCTGTGGCAGTTATCTGTCTTTTTGAAACTGTTCTATTGACTTACCTGAGTTACAAGGGCAACATTTGGGAGCAGATCATTCGGTTGACGTTTATCCTGGAGATGGTGAACACAGTGCCTTTCCTGCTCACCGTCATGTGGCTCCCTCTGCGGAACCTTTTCATCCCAGTGTTCCTGAACTGCTGGTTGGCCAAGCATGCCTTGGAGAATATGATTAATGACCTGCATCGTGCCATACAGCGAACACAGTCTGCCATCTTCAACCAGGTGCTCATCCTCATCTCCACCCTCTTCTGCCTCATATTCACTTGTATCTGTGGAATCCAGCACCTGGAGCGGGCGGGCAAGAACCTGACGTTGTTCGACTCCTGGTACTTCTGTGTTGTCACGTTCTCCACAGTGGGTTACGGCGACGTCACGCCCAACGTGTGGCCCTCCAAATTGCTGGTGATCATCATGATCTCAGTGGCCCTTGTGGTGCTGCCCATTCAGTTTGAGCAGCTGGCCTACCTgtggatggagagacagaagtCGGGGGGGAACTACAGCCGTCACCGGGCCCAGACGGAGAAACATGTGGTGCTGTGTGTCAGCTCCCTCAAGATAGACCTCCTGATGGACTTCCTCAATGAGTTCTACGCCCACCCCgggctgcagGACTACTACGTCATCATCCTGTGCCCGACAGAGATGGACCCCCAGGTTCGTCGGGTCCTCCAGATCCCCCTGTGGTCCCAGCGTGTCATCTACCTCCAGGGGTCAGCCCTCAAAGACCAGGACCTCATACGGGCCAAACTGGACAATGCCGAGGCTTGTTTCATCCTAAGCAGTCGCTGTGAGGTGGACCGAACTGCCGCAGACCATCAGACAATTCTGCGAGCTTGGGCTGTGAAGGATTTCGCTCCAAAGTGCCCCATTTATGTCCAGATTCTGAAGCCAGAGAATAAATTCCATGTGAAATTTGCAGATCATGTTGTGTGTGAGGAGGAATTCAAGTACGCCATGTTGGCCCTGAACTGCATCTGTCCAGCGACCTCCACCCTCATAACCCTACTGGTCCACACTTCACAGGGCCTGGAGGGGCAGCAGTCTCCAGAGCATTGGCACAGGACCTATGGCAAGTGTTCCGGAAACGAGGTTTACAACATCGCCATGAGAGACAGCGTCTTCTTCTCGGAATACATGGGGAAAAGCTTCACCTACACCTCCTTCAAATCGCATAAGAAGTATGGTGTGTGTCTGATCGGGGTGTGCCGGGAGGACAGTAAGAGCATCCTGCTGAACCCCGGGCCCCAGTTCCGAATGAGCCCCAATGACACCTGCTTCTACATCAACATCACCAAGGAGGAGTATTCTACCTTtaagacccagagagagaggatggtcaGCCGGCCTCGCCTGCCAGTACCCAGTGTCATCGCCAGCATGGGCACTGTGGCCATAGACCTCCAGGACGCAGGCTGCAAGCCCCACTGTGggcccactctctgtctccccccagaGGACTTTAAGGGTAATAGCAGGAGGCCCAGCATCAGCCCCGTGCTAGAGGTGCCAGACACTTCCTCTCTGCACACAGGTGACCTCTATAGTGACCAATCAGAGGACGAGAACCTGCCCTCCGACGAGGACGTATCAACTGAGGACTATGTGAAAGGCTATTCTCCCAACCTGCCCTACATCGGTAGTTCTCCAACACTTTGCCATCTACTGAAGGAGAAAGTACCATACTGTTGCCTCAGACTGGAAGGGGGTTGTCAGCATAACAACTTTGAGGACGCCAAAGTGTATAGCTTTAAGAACAAGCTGATCATTGTGTCGGCTGAGACGGCGGGGAATGGACTGTACAACTTCATCGTCCCACTTAGAGCTTCCTACAGACTTAAGAAAGAGCTGAACCCGATTGTGCTGCTCCTGGATAATCAGCCTGACACACAGTTCCTGGAGGCTATCTGTTGGTTCCCCATGGTGTTCTACATGGTCGGCTCCATCGATAACCTGGATGACCTCCTGCGCTGTGGTGTGTCCTTTGCGGCCAACATGGTGGTGGTGGACAAGGAGAGCACCATGAGTGCAGAGGAGGACTACATGGCTGACGCCAAAACCATTGTCAATGTGCAGACACTGTTCAGGTTGTTTTCCAGTCTCAGTATCATCACGGAGCTAACCCACCCGGCCAACATGAGGTTTATGCAATTCAGAGCTAAGGACTGgtactctctggctctctctaaACTGGAGAAGAAAGAGCGGGAGAAAGGCTCCAACCTGGCTTTCATGTTCCGCCTGCCATTTGCTGCCGGGAGGGTCTTCAGTATCGGCATGCTGGACACTCTCCTCTACCAGTCGTTTGTCAAAGACTATATTATCTCCATCACCAGGCTGCTGCTTGGCCTGGACACCACCCCGGGCTCTGGCTTCCTCTGCTCTATGCAGATCTCCGAGGATGACCTTTGGATCCAGACGTATGGAAGGCTCTATCAGAAACTGTGTTCCACTGTCGGTGACATTCCCATCGGCATCTACAGGACAGAATCCCAGATGGCTGATTCCTCCGAGTCACAGCTCTCGATATGTGTCGAGGACTTTGACGACGCCAAGGAGCAGACCGACATAGAGCTCCCCCCTGTGGCCGGAGGGCTCCACCGCAGCTCCACCTCCAGCGACCCATCGGACGGGAAGGCCCCCCTGCTGAGGAGGAAGAGCATGCAGTGGGCACGAAAGCTGAGCTGGAGAGGCCCACGGGGAAACCAGAGGGGGGCTCAGAGGGGGGCCCAGCAGGGTCTGAGGGCCAGACGCTCGGAGAGACAGGAGCTGGCTGAGCTGGTCAACAACCGAATGAAGAGCCTGGGACTCTCTGCCACGGCTTACGATGACATGAGCGAGAACCAGAGCACTCATTCCCACACATATGTGTTGATCAACCCACCTCCTGACACCAAACTGGAACTGAATGACATAGTGTATATCATCCGTTCAGATCCCGTGGGGTATGTCCCTAAGGCTGGTGACAGCAGAGAGAGTCTGGGAAGCAACACCTGTCTTGGGGAGCACACCAAGACAGAGTCTTCTTTTTGATCCATACCTACACACAACCTGCCTTTACAGTATTATTGGGTGGTTAAAGGGATCATTAATTTTTTTTGCACTGCTACATCCTTGCCGGGAGATTCTGGACGTTAAattagaaaataataataataaaactggCTAAATAACCAACTAATGTAAAACGGTTAGGATGAAATGACAACATCAAAAAATTAGCTAAAACCTCAACAAAGTGAACCATCCCTTTTAATGGCATAATTATGTTATGTGCTACAATTCACATTGCATTGCGCAGAGCATGGGGTGGTGCAAATCAATATAATCTTGGAATGTATCATCCCCATACTTTATCTACTTTTCAATTAACATAGATATACGTGTGTCTTaaactgtatctctctctttcacaatgTGGCCTTTCCAGAGGATAAACTCAGTTTAGGAACTCAATGATTTTAAAGACACTCCATGGTCAAAACTCTTCTAGGAGAgcagagtccctgctcatcttcCAAATATGTCTGAAACCCTATCTCGTCAAATAGTATTTTGGTATGGTATAATCCCACAGCATTCATACCCCCACTTCACCCCTCACCCCAAATATTGGTTGCCTTTCATGAAATAACCCTCACACTTGATCCCCTCCCCCCCATCCAaatagcactgactttgctgatagctactttattgagaaaGAATGTACTTAGTATGACTGGGAGGTGAGGAAATCACACATATCTagcttaagatgaatgcactagctgtatgtcgctctggataagagcatctgctaaataactcaaatgtaaATTGTGGTATTTATTTGCATGTTTGAGGGGTGGTGACTGAACTGTTTGGGTTGCTATGCAAAAATCTGTTTACAGATTAGTTTACAgtatagagctcgccagcttgtagtcctaaaaaaaCGCAGAAATGAGTAACCTCTGGTTCGTTCAACCATTGCTATGGCGGAAATGAATGGGGAAATGAAATGAATGGGGAAAGAATGGGGTTTCGGGATAAACGTCGGGAAAAaagtctgaggttaacacaggcttaggagatcttatataCATTGTGTTCCAGAACAAAACTTATAAGATCTGTTTACCACAGACGTTATTTTAGCAGTTTATCAATACAAAAAccccattcatttccccataggctttgCCCAACGAGCCATGGcagagttagtgcctacaaaaagacgccaCATTGCTCtattactattgctctctatacCTCATGATATCATATTTACTGTTTATTTACTCATTTGTATAGTCATGTGAATCATGCATTGTACTATACTCATCTGTTgaatgtttgttgtcattcatatTGACTGTCATAAATAATGGAATGTTTACTCTCATTATCTTTGCACACTTTGAATGCAAATAGATTCCTGAACTTG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU817227 lncRNA downstream 3037 51124344 ~ 51124577 (-) True G719276
TU817225 lncRNA downstream 8128 51119235 ~ 51119486 (-) True G719274
TU817214 lncRNA downstream 20935 51106439 ~ 51106679 (-) True G719263
TU817213 lncRNA downstream 21753 51105647 ~ 51105861 (-) True G719262
TU817205 lncRNA downstream 31964 51095376 ~ 51095650 (-) True G719255
TU817680 lncRNA upstream 34274 51223886 ~ 51224406 (-) True G719696
TU817681 lncRNA upstream 34917 51224529 ~ 51224765 (-) True G719697
TU817685 lncRNA upstream 38476 51228088 ~ 51228302 (-) True G719701
TU817686 lncRNA upstream 38789 51228401 ~ 51228671 (-) True G719702
TU817748 lncRNA upstream 122277 51311889 ~ 51312674 (-) False G719761
XM_036985599.1 mRNA downstream 59813 51032565 ~ 51067801 (-) False LOC110530040
XR_005052895.1 mRNA downstream 59965 51066307 ~ 51067649 (-) False LOC110530040
XM_021612810.2 mRNA downstream 59994 51032565 ~ 51067620 (-) False LOC110530040
XM_021612808.2 mRNA downstream 59995 51032565 ~ 51067619 (-) False LOC110530040
XM_021612807.2 mRNA downstream 89535 51032565 ~ 51038079 (-) False LOC110530040
XM_021612816.2 mRNA upstream 62743 51252355 ~ 51259056 (-) False LOC110530043
XM_021612817.2 mRNA upstream 62743 51252355 ~ 51259060 (-) False LOC110530043
XM_021612815.2 mRNA upstream 64553 51254165 ~ 51259061 (-) False LOC110530043
XM_036985600.1 mRNA upstream 126682 51316294 ~ 51323226 (-) False LOC110530045
XM_021612821.2 mRNA upstream 126682 51316294 ~ 51323599 (-) False LOC110530045
TU817090 other downstream 188143 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1238362 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1289918 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2338652 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 2345099 48782121 ~ 48782515 (-) True G716480
TU817704 other upstream 62743 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 1571427 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2273570 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2308536 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2613831 53803443 ~ 53856065 (-) True G722602

Expression Profile


XM_021612813.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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XM_021612813.2 Expression in each Bioproject

Bar chart with 20 bars.
XM_021612813.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.