RNA id: XM_021612833.2



Basic Information


Item Value
RNA id XM_021612833.2
length 2514
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110530053
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51583525 ~ 51591883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCAGCAGAGACACCTTGTGGCAAAACAGGAAAAATATCTCCTGTTCTATAGCTGCAGTGTATACCCTACCAAGGAATGGTACTCCAGCACTACAGAGGGCTGTACATCAAACTTtcttccttcacacacacacacaccttcacacctGAGCAAATGCTATAACAGTGTCAGACAGCCATTGGGCCAGAAAAAATGGCTAAACATTGAGGCACTCAAATTCAATGTGTCTTGACTTCTTGACCAACTCATTTTAAGCATGGGGTATGGTACTTGTCACTCAAGTTGCCCACACAGGTATGACAAGCATGCGGTTGACTGGGGTTGGAGTTTAAATAAGAAGTAGCAGGCTTGTCACTGAGAGTCCATGCCGTGTTGGAGAGAGCCCCCACTGACAGTTGAATCCCTTCCCCTGGTCCGGGAAGATGAAAACAGAGTTCCAGCAAGAGGCAGTTCCAGCAGTCTGTCCGCACAGCTTCTTCTGTGAGCAGAGGAGGTTTTGGGGTGTCTGGGAAGATGTTCTTTGTGACAGGGGCCAAAAGTGCAGGAGGGGCATCATCGGGAGGAGGAGCGACGAGGTCCATCTACCAGAAGTTCCGGGATGTTGACCTGCTGGACAAGAAGACGGTGACGGCTCTGAAAGCTGGAGAGGACCGGGCTATTCTCCTGGGCCTGGCCATGGTCACTGCGTCGATCATGATGTACTTTGTCGTGGGCATCACCATACTACGCTCTTACGCAGACAGTGTGTGGACAGAGGAGAGTGTCTGTATTGTGGTCAACTCTACCATCATGGCAGACGTGAACTGCTCTTACAGCTGTGGCTCAGACTGCTGGAGAGGCTCTAAGTTCCCCTGTCTGCAGGTCTACGTCAGTGTCAACACCACGGGCAGGCTCAGCCGCTTATCTCACAATGAGGAGAGCTGGGAATCCAACTTTGAGTGTTTCTACGTACCAAAGTGCCACAAGGACACTGCAGCCATGCACCACATGATCGTGAACATCTCAGAACGCCTGAAGCCGCACCAGCAGGTGCCCTGCTATTACGACCCCAGCGACCAGCAGGAGAGCGCCCTCTTGACCCGACTGTACGACCACAGCGCCGTCTTCTACTCGCTCTTCTGGCCCTCCTGCATGCTCACGGGGGGCACTGCCATAATCTTCATGGTCAAACTCACCCAGTACCTCTCCATTATGTGTGAGCAGGTAGTCAAGATCAAGAGGTGAAGCTTGCTAGCGCAGTAACTGAGAGCGACAAACATGGTCTCCAGTCCAGACAGATAATGACATGAAAGGGATTGTTTTAACCTAATGACCCTGTGACCTCTTGTAATGTCGCTCTCTCAACACTGAGACATTTAGAACAGGTGGCTTGATTTGCTTCTGTTCTACTTACGGACTGTTGCAAATTGAATGTGAAAGGAATGTTCTGAAATGGACATCTAAGCAGCTAAATTAATGTATGACCTCTGTTGCCTGAAAAGCAACATGCATGCATGTATAGTAGtgggaagtagtttgggggtgggGACAAACCTTTAGCCCGTGCTGATGCTGCAGATGGCTATatcggtctgctaatacaggactattaaaggcccagtgcactacttttgtgatttcattttttaattcagatttttcagggggtgctgcagcaccctcagcaacCCTGCTTCCCCCAGCTATGCATACATGTCAGAATATGCAACCTTTTCACAGAAATGAATAGGCTATTttaatgttgttgtttatctaccttgtcatatgcacaggatacacaatacaatgaaatgcttacttgcaggttcccgCTCGACAATGCGACCACAATAAGAAATACTTAAATGATTTGCAGACTTTGAACGCAGGGCTCTAACATAAAGTTGGGTACCCTCTCTTACAATACTACATTTGGAGTAATGTTGAGCACGTGTCCTTTATCTCACAGATGACAATGCCGAGCAAAATTTGTGCTGACGGAATGAGACAGAGTTCATTCTCCCAAATTGTACACTGTTGAAGATAATTGTTCATGACCTACTGTGTTGAGCAAAGTTAAAACCTTGTGCAGTTCCTGTATGTAATTTTTGCAGAAGAGGGTTAAAGACCATTGTCGAAATACCCGAACTAGCTAGAATATGCTGAATCTAATGTGGAAATTGCTGAATGAGAGCATCAACATATTTTAGGGGTCAGCCATAGATTATCTTATTTGCAGttattaccattttattgttcAGTCTGTCATACAAAAATTGTGCTATGCAAAAATGTGTCTCTGATGACAACCAAGGAAAGTTGCTACatcatgtttattttttatacattttgctCTGTATGCAATAAATTACCTCAATAACATATTGATGCAGTTATGACTTCCCATGGTGAGGCATatcaaaattaaataaataatctgACGGTAAATCTAGTGCATTTCTACAATCAAGCAATTGTTTACAAATGATGCAACTGTAATACACCCTACCTTCTTGTTCAGAATTTCTTAGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU817888 lncRNA downstream 8277 51511287 ~ 51575248 (-) True G719886
TU817852 lncRNA downstream 117297 51465976 ~ 51466228 (-) True G719854
TU817840 lncRNA downstream 136541 51446739 ~ 51446984 (-) True G719842
TU817839 lncRNA downstream 138005 51445220 ~ 51445520 (-) True G719841
TU817833 lncRNA downstream 144130 51438954 ~ 51439395 (-) True G719835
TU817973 lncRNA upstream 48486 51640369 ~ 51640659 (-) True G719970
TU817988 lncRNA upstream 90248 51682131 ~ 51686715 (-) True G719981
TU818000 lncRNA upstream 114574 51706457 ~ 51706712 (-) True G719992
TU818001 lncRNA upstream 115907 51707790 ~ 51708111 (-) True G719993
TU818002 lncRNA upstream 116422 51708305 ~ 51708550 (-) True G719994
XM_021612832.2 mRNA downstream 1170 51560800 ~ 51582355 (-) True LOC110530052
XM_021612831.2 mRNA downstream 36591 51525267 ~ 51546934 (-) True LOC110530051
XM_021612828.2 mRNA downstream 66616 51496080 ~ 51516909 (-) True mfsd8l2
XM_021612824.2 mRNA downstream 202662 51377904 ~ 51380863 (-) False LOC110530046
XM_021612823.2 mRNA downstream 259925 51317992 ~ 51323600 (-) False LOC110530045
XM_021612841.2 mRNA upstream 56655 51648538 ~ 51689345 (-) True si:dkey-18p12.4
XM_021612845.2 mRNA upstream 150331 51742214 ~ 51751447 (-) True eif4a2
XR_005053066.1 mRNA upstream 151994 51743877 ~ 51744055 (-) True LOC118965688
XR_005053067.1 mRNA upstream 157341 51749224 ~ 51749294 (-) True LOC118965689
XR_005053027.1 mRNA upstream 157867 51749750 ~ 51749819 (-) True LOC118965644
TU817704 other downstream 324506 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 644054 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1694273 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1745829 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2794563 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 1169156 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 1871299 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 1906265 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2211560 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 2334345 53926228 ~ 53927959 (-) True G722670

Expression Profile


XM_021612833.2 Expression in all Baseline Samples

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XM_021612833.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021612833.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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