RNA id: XM_021612841.2



Basic Information


Item Value
RNA id XM_021612841.2
length 1844
RNA type mRNA
GC content 0.45
exon number 11
gene id si:dkey-18p12.4
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51648538 ~ 51689345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTACTCATTTTTAGGTtgttttatactgtagtgacagtAATTGGAATACAACTGCATTACTGTGTTCCATTTCACTTTCTgtttattcatttaaaaaaataacattgtttGAAATGACCCAGGTGGTGCTAGTGGGTGGAGAAGACGACAGAAGACTGTAAACAAACCATAATCAAAACAGGTTCTTAATTCTGTGGATGGCGGTGAACAACAGGACTCCTGAAAATGATTCTGCATTCTATACTCTCACTGGGTTTTAAAGCACTATTATAGTAAAAAGATGGCTTCACAGACAGATTCGATACTGAGAGTTGGTGGCAGTTGCGGCAGCATTGGAAGAATTTGCAATAAAGAGAACAATCACAGAACCTGTTCTTCACAACCTTTCAACAAACCATTAATGTGCTTACTACACAAGAGGAAGAAAAGCCTCAAGCATAAAGTACTTAAGTTGTTGGCACAAATGAAGGGAACGGACAAAGAGAAAGAAGATTTCACCTTTGATGAGTCTAAATGTATCATAAGAGAGCTTGCTGCTGAACTGAGCAAGGTAGTTCAGTCCTCACAGATCAGCAACACCTCCCTTCTGACCAGAGTGAATGAGGATGGATCTTGTCAAGAGGAGCGTCAAGACTTTATACTGCAGTGGGCTGAGGAGCTGAAACACTCATCACAGACACAACAGACACCAGCAGGGGAAATCACAAGACACAGGAGGAGTGACAACCCTCCAGATCAACAGAAACCAGACAAGGAACAGAAACTGAGGGAAGCCACGAAAGCCCTTTCTGAGTGGGCCTGGAGACTCAAGGATACGGAACAGGACTCCGTGTGTCTGGGTGAGGATGTGTGTTCAGTACTGCAGGATCTGGAAAGACAGTGGAAGAGGGGGAAGCTTCCCAACATGCTCCCTGTCATGGACTTCCTCATCTGGAGCATACTACAGGAACAGCAGGAGGGTTCCATTGTAAAGCATTGGCTCAGAAATAGACAAAGGTCCCGAAGCAGAGTGACTCTGAATCGCGTTCCTGACTCAATTTGGAACTTGATTTTGAAAGCATCAGTTgagatcactctggatgaaaaaACAGCCAACCCAAATCTCTTACTGTCCGCTGACAGGAAAAGAGTGAAAATGGCCACCATCATTGAGGATGTTTTTGATCCCCGGGATGGATACAGCCCTGGATCCCACACGTATGATGGCTGGTGGTGTGTCCTTGCAAAGGAGGGCTTTACATCTGGGAGACATTACTGGGAGGTGAGAGTCTGGGGCAAGgcagagtggaggataggtgtgGTTAGAGAGTCAGCACCGAGGAATGGCTTTGCAAATCTGAACACAAAAGCTGGTTACTGGAACTTGCGTCTGCAGCTTGGGGAGCTCATGGCTCTAAGTGCACCAGTCATTAAACTGAACCAGTCTCCACCCTCTAGGTTAGGGGTGTTTCTAGACATAGAGGAGGGACAGGTATCCTTCTATGATGCAGAGGAACGATGCCACATTTACACTTTTAATGTCAATTTTGATAACTTTGGAAAGATTTACCCTGTGTTTGGAACaattgagacagacagagagctggttaTTCTGTAGGGAAAATAACTTGATGCAAGCTGTCTGGCTTACTTTATGGACATCTCAATGTATAGTTGTTGACTGTCTCAACTGACAATTCCCTGAGATTACAAAAGGTGTTCCTCAAGAGTCCATTTTAGGGCCGTTTTATTCACACTGTAtgtaagcaatcgggggagaacagccttggtcagagaggtgaccaagacaCAATGGCAGACACTctggacagagctccagagttcctctgtggagatgggagaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU817973 lncRNA downstream 7879 51640369 ~ 51640659 (-) True G719970
TU817933 lncRNA downstream 60346 51587952 ~ 51588192 (-) True G719930
TU817929 lncRNA downstream 64144 51583615 ~ 51584394 (-) True LOC110530053
TU817888 lncRNA downstream 73290 51511287 ~ 51575248 (-) True G719886
TU817852 lncRNA downstream 182310 51465976 ~ 51466228 (-) True G719854
TU818000 lncRNA upstream 17112 51706457 ~ 51706712 (-) True G719992
TU818001 lncRNA upstream 18445 51707790 ~ 51708111 (-) True G719993
TU818002 lncRNA upstream 18960 51708305 ~ 51708550 (-) True G719994
TU818011 lncRNA upstream 27122 51716467 ~ 51716743 (-) True G720003
TU818017 lncRNA upstream 32328 51721673 ~ 51721970 (-) True G720009
XM_021612833.2 mRNA downstream 56655 51583525 ~ 51591883 (-) False LOC110530053
XM_021612832.2 mRNA downstream 66183 51560800 ~ 51582355 (-) True LOC110530052
XM_021612831.2 mRNA downstream 101604 51525267 ~ 51546934 (-) True LOC110530051
XM_021612828.2 mRNA downstream 131629 51496080 ~ 51516909 (-) True mfsd8l2
XM_021612824.2 mRNA downstream 267675 51377904 ~ 51380863 (-) False LOC110530046
XM_021612845.2 mRNA upstream 52869 51742214 ~ 51751447 (-) True eif4a2
XR_005053066.1 mRNA upstream 54532 51743877 ~ 51744055 (-) True LOC118965688
XR_005053067.1 mRNA upstream 59879 51749224 ~ 51749294 (-) True LOC118965689
XR_005053027.1 mRNA upstream 60405 51749750 ~ 51749819 (-) True LOC118965644
XR_005053069.1 mRNA upstream 60765 51750110 ~ 51750180 (-) True LOC118965691
TU817704 other downstream 389519 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 709067 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1759286 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1810842 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2859576 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 1071694 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 1773837 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 1808803 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2114098 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 2236883 53926228 ~ 53927959 (-) True G722670

Expression Profile


XM_021612841.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_021612841.2 Expression in each Bioproject

Bar chart with 20 bars.
XM_021612841.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.