RNA id: XM_036985620.1


Basic Information

Item Value
RNA id XM_036985620.1
length 9103
RNA type mRNA
GC content 0.50
exon number 49
gene id kif1ab
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52379925 ~ 52436868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGGACCAACCAAAGGTCGTTCTCTTCTGAGCTCGCCTCCTGCATCCATCTAGCTCTAGCctaattcctctcctctctcctccctgtctattCCCCTACCCTACCATACCCATGTCTGGCTTGCTGGCAGACAGACTGACGCGCTACTGTGTACCAGGCCCTGTTAGAACCCATTCACCAATAGCCCTGACTGGGGTGGTCtagctctgtgtctctttctATTGCTCGGGGCGGATACTCCCTGCATGGATACACCGAGGGAGGCTGTTAGCTGATATCGACGGGAGGAAAACATATCAAGGAGGAACCCACTGCTGTCGTCGAATTCGAGGTGGTTAGGTGTTAAGCATCTACCTGGTGACAAGCCCCTCCTGACTGAGCCCCTCTATAGTCGCGGGCGCATCCCCCCACTGACAGGCATCATGGCGGGAGCTTCAGTGAAGGTGGCCGTACGGGTCCGTCCCTTCAACTCTCGAGAGATCGGGAAGGACAGCAAGTGCATCATCCAGATGTCAGGGAACACCACAACAATCATAAACCCCAAACAGCCGAAGGAGAACAAGAGCTATAACTTCGACTACTCTTACTGGTCACACACAACAcCGGAGGACATCAACTATCATTCCCAGAAGCAGGTGTACAAGGACATTGGGGAGGAGATGTTGCTGCATGCCTTTGAGGGATACAATGTTTGTATCTTTGCCTATGGCCAGACTGGATCTGGGAAGAGCTACACCATGATGGGCAAGCAGGACCAGAAGGATCAGCAAGGCATCATCCCTCTGCTGTGTGAGGACCTCTTCACCAAGATAAGTGACAGCAATAAGGAAAACAGCTTGTCCTACTCCGTGGAGGTGAGCTACATGGAGATCTACTGTGAGCGTGTGCGTGACCTACTGAACCCGAAGAACAAGGGGAATCTGCGTGTGAGAGAGCACCCCCTGATGGGGCCCTACGTGGAGGACCTGTCCAAACTGGCCGTTACCTCCTACAATGACATCCAGGACCTCATGGAGTCTGGCAACAAGGCCAGGACGGTGGCAGCCACCAACATGAACGAGACCAGCAGCCGCTCTCATGCTGTCTTCAACATCATCTTCACGCAGAAGAAACACGACATGGATTCAGAAAACACATCTGAGAAGGTGAGCAAGATCAGCCTGGTGGATCTGGCTGGGAGTGAGAGAGCAGATTCTACAGGAGCCAAAGGAACCAGGCTGAAGGAAGGAGCAAATATCAATAAATCTTTGACCACACTGGGGAAAGTCATCTCTGCATTAGCTGAAGTGGACTCAGCACCAAATAAGaacaagaagaagaagaaggtggAGAGCCACATCCCCTATAGAGACTCAGTGCTGACCTGGCTTCTCAGAGAGAACCTGGGAGGTAACTCTCGCACCGCCATGGTGGCAGCCCTCAGCCCTGCTGACATCAACTATGACGAGACCCTGAGCACCCTCAGGTATGCTGACCGCGCCAAACAGATCCGCTGTAACGCCGTCATCAACGAGGACCCCAACAACCGTCTGGTGCGTGagctgaaggaggaggtgtgCCGACTCAAGGACCTCCTCTACGCCCAGGGCCTAGGAGATATCATAGACAcGTATCGATGTCCCGATCCTGTGATAGCTGGTTTGAAAAACTTGTGCGATTACAAGAACTTTGTCAATAATCGCCAGGCTGTCAATCAAACGGGTGATCTATCCACAGTGACCAATGCCATGACTGGGATGagtccttccccctctctctccgccctgTCCAGCCGTGCGGGCTCCATGGCAAACCTGCATGACCGCATCTTCAGCCCTGCCTCTGAGGAGGCCATAGAGAGACTCAAgGAAACAGAGAAAATCATTGCTGAGCTCAATGAGACATGGGAGGAGAAGCTGCGCCGTACTGAAGATATCCGGATGCAGAGGGAGGCCCTACTGGCTGAGATGGGTGTGGCCATGAGAGAAGATGGAGGCACCGTGGGCGTGTTCTCCCCCAAGAAGACCCCTCACCTGGTGAACCTGAATGAGGACCCACTGATGTCTGAGTGCTTACTCTACTACATCAAAGATGGGACCACCAAGGTTGGACGTGACGACGCCAGAAGTCGCCAGGACATCGTGCTCAGTGGCCATTTTATCCAAGACGAGCACTGCACCTTCAGTAGCACCGCAGGCTCCGGCGGAGAAGATGATGATGACACAGGGAATGTCAGCCTGGAGCCCTGCGAGGGGGCTGAGATCTACGTCAACGGGAAACTGGTGACCACGCCTACTCTGCTTCGTTCAGGAAATCGCATTATCATGGGGAAGAGCCATGTGTTCCGCTTCAATGACCCGGAGCAGGCGCGGCAGGAGCGGGAGAGGACCCCCTGCGCCGAGACCCCCGTGGAGCCCGTGGACTGGGCCTTCGCCCAGAGAGAGCTGCTGGAGAAACAGGGCATCGACATGAAGCAGGAGATGGAGTCAAGGCTTCAAGAGTTAGAAGATCAATACCGCCGAGAACGAGAGGAGGCCAGTAACCTTCTGGAACAACAGAGACTGGACTATGAGAGTAAACTGGAAGCCCTGCAGAAACAGGTGGACAGAAACTCCCGTTACCTGGAGTCCCCAGACGAAGAAGAGGAGCCTGAGGAGGAAGTTCCGTGGACAAAGCGTGAGATGGAGCTTGCATCCTGGGCGTTCCGTAAGTGGCGTTTCTACCAGTTCACCTCCCTCAGGGACCTGCTGTGGGGCAATGCCATCTTCCTCAAGGAAGCCAACGCCATCAGTGTGGAGCTCAAGAAGAAGGTCCAGTTCCAGTTTGTGCTGCTGACAGACACACTGTACTCCCCGTTGCCCCCGGACTTGCTGCCCCCCAGCGTGGCCATGGAGCGGGAGAAACGGCCCTTCCCCAGCACCATCGTAGCTGTGGAGGTCCAGGACCAGAAGAACGGGGCCACACACTACTGGACCCTGGAGAAActcagACAGAGGCTGGACCTGATGAGGGAGATGTACGACCGTGCGGCGGAGGTGCCTAGCAGCACTGTGGAGGACTGTGACCAGGCTCTGACTGGAGGAGACCCCTTCTATGACCGCTTCCCATGGTTCCGTCTGGTGGGCAGGGCCTTTGTGTACCTGAGTAACCTGCTGTACCCCGTGCCGCTCGTGCACCGCGTGGCCATCGTCAGTGAGAAGGGAGAGGTGAAGGGCTTCCTCAGGGTGGCAGTACAGGCCATCTCAGCTGATGAAGAAGCCCCTGACTATGGTTCTGGCGTAAGGCAGTCAGGAACCGCCAAGATATCCTTTGAGGACCAACAGTTTGAGAAGTTCCAGACAGAGTCGTGTTCCGGCGGCATGTCCCATTCTAACACCTCTCACGAAGAGCTGCGCTTCGTGGAAGGGGAGGGACAGAACTCTGATGTAGGAGCTGACCCTGACGAGGTCAACAACAACACCTGTGCAGACTTGTCCCCCGTCACAGCCACACCAGAGGTCCCCAGGAGCCCACTGAAGGGTGGTCTGGGTCTGGAGCTGCCCCTGGAGAAGGCCCTGTCCCACCTCCACATAGGCTCCACCTTCACCTTCAGGGTCACAGTGCTGCAGGCCTCCAGCATTTCCGCTGAGTATGCTGACATCTTCTGCCAGTTCAAAAACGACTCCATCCTCTCTTGGTTTAAACAAACAAAATTCTCATGCTTCATCCACCGACATGATGAGGCTTTCTCCACTGAGCCACTCAAGAACACTGGCAGAGGACCTCCGCTGGGATTCTACCATGTACAGAATATCACGGTAGAGGTTACCAAGTCGTTTGTGGAGTACATCAAGACCCAGCCCATCGTCTTTGAGGTGTTTGGCCACTACCAGAAACATCCATTCCCACCCCTCTGCAAAGACCTCATCAGTTCACACTTCTATTTCAGTCCCCTTCGACCTTCTAGGAGGCAGTTCCCAAGGGTCATGCCCTTGTCTAAACCAGTACCAGCCACCAAGCTGAATACCCTGACCCGTTCCACGGCCGGCCCGTGCCACTCCAAATATGACCTCATGGCCTTCTTCGAGATCTGTGAGCTGGAGGCCAATGGAGACTACATCCCTTCAGTGGTGGACCACAGAGGGGGCATGCCCTGCCACGGAACCTTCCTGCTTCATCAGGGCATCCAGCGGAGGATCACAGTCACCATAGCGCACGAGACAGGAAATGACGTGGAGTGGAAGGAGGTCAAGGAGCTGGTGGTGGGGCGGATCCGGAATACTCCAGAGGCTGATGAGACCATCATCGACCCCAACATCCTGTCTCTCAACATTCTATCTGCGGGCTACATCTGGCCCTCATATAATGACAACATGTCCCTGGGAGTTGACCATAGGACGTTTTACCGATTTGAGGCGGCGTGGGATAGCTCCATGCACAACTCCCTCCTCCTGAACCGTGTCACTCCCTATGGAGAAAAGATCTACATCACTCTCTCCGCTTACCTAGAGATGGAGAACTGCACCCAACCAACAGTGATCACCAAAGACTTCTGTATGGTGTTCTACTCCCGTGACGCCAAGCTCCCCGCCTCACGCTCCATCAGGAACCTCTTCAGCACCGGCTGTCTCAGGCCCTCAGAGAGtaatcgTGTCACTGGAGTGTATGAAGTCAGTCTCTGCCATGTCGCTGATGACGGAAGTCCCGGCATGCAGCGGCGGCGCAGGCGCGTCTTGGACACCTCGGTGGCATACGTCCGTGGGGAAGAGAACCTGGCTGGGTGGAGGCCCCGTAGCGACAGCCTCATCCTGGACCACCAATGGGAGCTGGAGAAACTCAGCCTTCTGCAGGAGGTGGAGAAGACCAGACACTACCTGCTGCTGCGGGAGAAACTGGAGGCCACCCTGGCAGTGGGGCAGGACGCTCTCTGCAAGAGTGGTGACCTTAGCGACTTTGCCAAGAGCCCCATCCTCAGCCACTGCCCCGGGGGTAGCCCCGCCCTGGAGAGTCCCAGCCAGAGGCAGAGGGAGCTGGCTGCCAAGTGTCTGCGGCTGCTCATGCACACGTTCAACAGGGAGTACAGCCAGGTGAGCAGCAGTGCCAGTGAGAGCAAGcTGTCTGAGATGTCAGCGTCGCTGATGTCTCCATCCTCTTCTAGTCTGAGCACGCTAACTCCGTCCTCTACTTGCCCCTCATTGGTGGAGGGAAATTATGACATCAGACACACTGAGCCCATCTCTGGCGCTTCCAGCCCAGACCTGGACCCCTTCAGTCCTGTGGACAAGAAGAGGACCCTGGGTAGAGGCTGCACCTTCGTCCCTGACATCCAGGAGATCCGCGTCAGCCCCATCGTGTCTAAGAAAGGCTACCTACACTTCCTGGAGCCCCACACCAGTGGCTGGGTGAAGCGCTATGTAGTGGTGCGCCGGCCCTACGTCTACCTGTACCGCAACGAGAGGGACAGCGTTGAGCGTTCCGTCATCAACCTTTCCTCCGCCCAGGTGGAATACAGCGAGGACAAGCAGACTCTGCTCCGGACTCCAAACACATTTGCAGTGTGCACCGAACATCGTGGAATACTCCTCCAGGCCAGTAATGACAAGGAGATGCATGACTGGCTGTATGCTTTTAACCCCTTGCTCGCCGGAACCATCAGGTCTAAGCTCTCCAGAAGAAAGTCAGGCCAGAGGATGTGAGGAACAGGAACACccgctgtgtgtggggggggggggacatctgAAATGTCCACGGaccctctgctgtatatagcttATCTAAACAGCTCTCTCCTGCGCTGCTCTCCGTCCTAACAGTGCTCCATCCTATCGCTGATACGTCCTCGAACAGCACTTAAAACCATCCCAGCCGATCTCCTATTTGACGCCTCTTCCTGGTTACCTGGATCATGCATGGTATAAACTACCCATTAAAGACCATTAAAACCCATATACTGTAAGACTACCTAACAACGCAACCCTGAGTAGTGGGGCTTAGCTCCGCTGGCTGTTATGCTCCTTATTGTCATGTGTATGTAGACCTTACCTTCCAGGCTTACAGCCCCTATAGGGTTTAGCCAAACAAAGGAAGAATATAACGTTTATGTCTTAGTCCGAGTTGTTATCAGTTCCAATATCATGCAACTTACTACTACCACCCTCTATTTGTATATGATGCCCCATATCCAAACCTCTCATGTATTTCTTATAAACACTGTAGTCTAATAAgaaaaagaataatgggaaaatggTATATTCCCTTTTCTAGTCCTCTCATAAGAtatctctgtttctgtgtgtgtgtgtttagtgcagAGAAGATAGCAGTACCTATCAATGCTCTTTCTCATGTTAAAACAGCGTATCCATATTACCTCATGTTGAAAATCGCTGGGCTGCAGGCGCACACTGTAACTCGTTGTCATTGCATCTGTTTTGTATCCAAGGTTTTGGACGATATACAGTGTGATAGATGGGATGCTGTGAAGGTACATTGGACAGTGTAGGGTGAAAAGTGACATAATAGGACAATGTTTTGTTGCCAATGTTTTGgacagaatacagtgggatagaatTGTAATAGTTGGATAATATGATGGATAGAATATGATAGGACAATAGGATGACTCTTTGGCTTCCATGTTTGGATAATGGTGAGTTCGCTGTGCTGACATTTCATAGTAACACGTTTGCTACAGTAGAGTATAAAGCATGTCATTTCGCTGGCTGCCTGACAGTGGAGAGCAGTTGTGTCCCTGATTTATTTTCACCTTATGTGTTTTTCCATATTATTTGTGTACGTACAttatttgttctttttttttatttgtatgggATCACTGACCAGTTTTGTCGCGTCGCACTTTATTGTTGCATTATGTACACTTTATTTCACTCAGTTGCTTTAAACCAAAGCATTCCAATCTCAATTTTAAATAGTAAAGATTTTCTCTGTTGTGTAGACTTGACAAAATGGCTCCCAGGTTTTAGAGATATTAATGTAATCTTCAAAACATCAAAACCTACTATTCTACTCCTCTATGTTGACCCTGAATGTCTGTTTATAAGTGAATTATACCATGTGGATACACTGAGAATGGTTCCAATCGAGCAAGTTGACGTCTATTCCGTTCTATGGTGGTGGGTTTACAGTAATGTTGAATAATTGTAAGGACAAATTTGATCCTACTGTATTGACGGGTTAGTGGGATATTTTTGACCTTTTTTTTCTCGACAGTCCATTTGTGAGTCTGAAAGTACATCGTTATGCACCAGGTAGtgcctaccttctctctctctttccagtttTTCATCAATCCCACACATTCACATCGTTGACGTCCACCACGCTCGCTCAGTACTACATGTATCAAAGCAAACATTTATTTACTGGGCTGCTATGAACCTTCTATTGACGCTATGTGTCCATGTGAATCTATCCGTTTGGATTAAATAGccctgatacagtatatagcctacgTCAGCTCCTTGTTGTAAAGTAGCGTCTTAACATCCTTTGCTCTGCTTTTGTATAGCTTGTTTTACAGCCTGGCGTTTGTATCCGAAACCTATACAGTATGAACCTGTCTCACATCCAGGGACTTAGGAAGCCGTTTATTGTTTCTGTGACCATACTGCTACATCCAGATGACATGCAAAACTGCTCTCTGGAACAAAACGAGTCCTAAGTCAATCAAGGGGGCGCTGCCGACTGAAGTAAAAGCAAAGTGACTCTTTCAGCGCTACGTTGGTCTAGCAGCCCATAAAAGATGGGCAATTTCAAACTAAAGTTGCCGGTTGCCTCCTAGTCTAGCTGTGCTATGCTCTTGCGTGGACATGCTTTATTGAAAATCAAGTGTTAGTCTTGTGTTTACGGTAACGTCGTGTGTTAGCGCAGCAGACCAGGGCCGTGGCCAGACAGCCAATTGGATCATGTCTTACTGTTGTTCCTTGTTCTTACTGCGAGGGTCGTGGTTCGGGTCAAACACAATTCTCCCGTTGTAGCAGATCGTGCATGCTTTAGGCCAGCCAACCTACAGAGCATGCTGAGGTAGACACGGCAAGGTAAAACATGCAAGACATGGCATGCTCACACGCTGTCCCATAACTACGCGTTTATAGCCTCCAATTCTAAACATATCCTCCCAATAAGGAATATAATTGCTGTTATACTAGCGGTTCTTTCTGTTTTCTGATTCTAGAACGCTGACACCAAAAACACGACCTATCGCTAGGTAAATACCATTAACTACGGAATCTGGGATTCATATGGTGGGTCAAGTTGGGGTCATCTTGGTGTATGCATTTTAAGCTTTGTTGTACACTGGTATGCCACTTTATTTTGTCTGCTCGAACAATGGAAGAAAATAAAGCTTTATTTATGAATTATTGTTGCTATTTGGAGGTGGAGTATGTCAGCGGGGAATGTTTGAGCTATTGAATTGTCATCCAAGTCTAATGTATTGTATTTATCACACCTCATAATTTGAATGAATAATGTGTGAGTAAGATTGGTTGGGGGGTAGGATATCCTTCAACAGAAGGAGATGTTGTTTTTTCAACTGTACCATTGTCGCTTTAGCGTGTAGCACCTTAAATGCATCTTACTGCATCTACTGTAAAGGGGACTCTTAACTCTACTTGTTAATGCTAGGATAGCTGACTTTCTGTCCTCAAAGAAGAAATCACTGCAAGTTAAAACAACGCATTTGAAGTTCAGTGATCTGGCTATAGACGAATATGGATTGGCTCTTTCACTGATTTGACTGCTTTTTTAACATGGCATTTCCTGGATCCAAGCATGTAGATGTGTCTCTTCCTCaccctggtctctctgtctctttcccttacTGCTTGCTATTGATGTCCTATCCCCCTCAGTGCAGCCCTGTAGAGAAACGCCCACCTCCATGACTTGGTATTGACTCTTCTTGACATTTGATTGGCACCTTTCTTGTAAATAATTAACCTGATAGGATCCACCACAGCCAATCGCACAGATGTAACCCCCCTGTTCCTTTATACAATAACTGGCCTGTGACATCATCTCAGTGCTCACGTTATCTTTGAGTGTTGGAGTTCTAGTGTCTTCTAATGTTTGTGGACACGTAACCAGTTGTCGAAATAAATGTGACATTTATGCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU819266 lncRNA downstream 87580 52291980 ~ 52292345 (-) True G721149
TU819265 lncRNA downstream 88005 52291672 ~ 52291920 (-) True G721148
TU819227 lncRNA downstream 134633 52243208 ~ 52245292 (-) True G721110
TU818615 lncRNA downstream 173134 52206555 ~ 52206791 (-) True G720563
TU818588 lncRNA downstream 205176 52174451 ~ 52174749 (-) True G720538
TU819406 lncRNA upstream 11515 52448383 ~ 52456858 (-) False G721207
TU819407 lncRNA upstream 11515 52448383 ~ 52456858 (-) False G721207
TU819408 lncRNA upstream 11946 52448814 ~ 52459659 (-) True G721207
TU819437 lncRNA upstream 46654 52483522 ~ 52490403 (-) True G721235
TU819440 lncRNA upstream 47189 52484057 ~ 52591956 (-) True G721236
XM_036985617.1 mRNA downstream 16807 52353302 ~ 52363118 (-) True LOC110530080
XM_021612877.2 mRNA downstream 16816 52352804 ~ 52363109 (-) False LOC110530080
XM_021612878.2 mRNA downstream 16816 52352804 ~ 52363109 (-) False LOC110530080
XM_021612874.2 mRNA downstream 27230 52346057 ~ 52352695 (-) True LOC110530079
XM_021612872.2 mRNA downstream 27264 52346057 ~ 52352661 (-) False LOC110530079
XM_021612881.2 mRNA upstream 28824 52465692 ~ 52475757 (-) True LOC110530083
trnav-cac-8 mRNA upstream 47105 52483973 ~ 52484045 (-) True trnav-cac-8
trnav-aac-10 mRNA upstream 47307 52484175 ~ 52484247 (-) True trnav-aac-10
trnav-cac-9 mRNA upstream 48613 52485481 ~ 52485553 (-) True trnav-cac-9
trnav-aac-11 mRNA upstream 48815 52485683 ~ 52485755 (-) True trnav-aac-11
TU817704 other downstream 1120906 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 1440454 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 2490673 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 2542229 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 3590963 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 324171 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 1026314 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 1061280 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 1366575 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 1489360 53926228 ~ 53927959 (-) True G722670