RNA id: trnav-cac-85


Basic Information

Item Value
RNA id trnav-cac-85
length 73
RNA type mRNA
GC content 0.56
exon number 1
gene id trnav-cac-85
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52729898 ~ 52729970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttccgtagtgtagtggttatcacgttcgcctcacacgcgaaaggtccccggttcgaaaccgggcggaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU819473 lncRNA downstream 3114 52719286 ~ 52726784 (-) False G721260
TU819474 lncRNA downstream 3114 52720787 ~ 52726784 (-) False G721260
TU819472 lncRNA downstream 3114 52724948 ~ 52726784 (-) True G721260
TU819443 lncRNA downstream 73309 52589219 ~ 52656589 (-) True G721238
TU819457 lncRNA downstream 184164 52540080 ~ 52545734 (-) True G721248
TU819504 lncRNA upstream 48408 52778378 ~ 52778596 (-) True G721288
TU819505 lncRNA upstream 49066 52779036 ~ 52779473 (-) True G721289
TU819478 lncRNA upstream 63347 52793317 ~ 52818700 (-) False selenof
TU819476 lncRNA upstream 63408 52793378 ~ 52818726 (-) False selenof
TU819477 lncRNA upstream 63408 52793378 ~ 52818700 (-) True selenof
trnav-cac-84 mRNA downstream 2868 52726958 ~ 52727030 (-) True trnav-cac-84
trnav-cac-83 mRNA downstream 4453 52725373 ~ 52725445 (-) True trnav-cac-83
trnav-aac-152 mRNA downstream 5759 52724067 ~ 52724139 (-) True trnav-aac-152
trnav-cac-82 mRNA downstream 5961 52723865 ~ 52723937 (-) True trnav-cac-82
trnav-cac-81 mRNA downstream 7267 52722559 ~ 52722631 (-) True trnav-cac-81
XM_021612885.2 mRNA upstream 3040 52733010 ~ 52756561 (-) False LOC110530084
XM_021612882.2 mRNA upstream 3040 52733010 ~ 52756595 (-) False LOC110530084
XM_021612883.2 mRNA upstream 3040 52733010 ~ 52756602 (-) False LOC110530084
XM_021612884.2 mRNA upstream 3040 52733010 ~ 52756602 (-) True LOC110530084
NM_001124454.4 mRNA upstream 63775 52793745 ~ 52818707 (-) False selenof
TU817704 other downstream 1470879 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 1790427 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 2840646 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 2892202 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 3940936 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 31069 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 733212 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 768178 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 1073473 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 1196258 53926228 ~ 53927959 (-) True G722670