RNA id: XM_021612883.2


Basic Information

Item Value
RNA id XM_021612883.2
length 3047
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110530084
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52733010 ~ 52756602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTACAAATTGTAAAGAAAATCGTTGGTAGTAGAATGACGTGTTCAATTTTATTGATAAGAAAAATCAATACATTATAAGAGGACCAATTTGGGGACAGTCAACGCCCAATGCATTCTGGTCCTTGTGCTGAAGAAGATCCGAAATTTGAGGTGTTGTTCGCCAGTCCGGCCTCCAaaccaatgactgtatatatgcACCTAACCCACACGGTTTTCTTTCAGTGACAATCAAAACGaCTTCCACTGCTCCGCGTTGAACAAATAAAAGTTCAGAGAGCAGTTAATGCGCTAACTAACTGTAGGAAGTTTTGTTATCGCttcaagcttctttttttttatagGTATACTGTAGTAGAAAAGGCACTAACTCACTAAATAAAAGAACAGAATGGAAAGTTGAATTCAAGTTAAAACCAACTTGTGTACATGCATCTGTGAAGTGAAAGCGCGTAACAACATCTTTGGAAGGTTGAAAGAGTGCAAAATGTCTCAGGCTGAAAAAATTAAGCAGGGTCAGTTCACCAACCCAGAGACCCCGGGGTATGTGGGCTTTGCCAACCTGCCCAACCAGGTGCACCGCAAGTCAGTCAAAAAGGGCTTTGAGTTCACCCTCATGGTAGTTGGTGAGTCTGGTCTGGGGAAGTCCACCCTCATCAACAGTCTGTTCCTTACGGATCTCTACCCAGAGAGAGTGATCCCCGGAGCAGCAGAGAAGATTGAGCGCACGGTTCAGATCGAGGCATCTACGGTTGAGAtcgaggagagaggggtgaagctCCGCCTCACCGTGGTGGACACACCTGGATACGGCGACGCCATCAACAGCCAGGACTGTTTCAGCACCATCATCGCCTACATCGACGACCAGTTTGAGCGCTATCTCCACGACGAGAGCGGTCTGAACCGACGGCACATCGTGGACAACCGTGTTCACTGCTGCTTCTACTTCATCTCCCCATTAGGCCACGGgctgaagCCTCTGGATGTACAGTTCATGAAGGCCATCCACAACAAAGTCAACGTGGTCCCTGTCATCGCCAAGGCCGACACACTCAccctgagggagagggagaggctcaAGCGCAGGATTCTGGATGAGATTGATGAGCACGGCATCAAGATATACCATCTCCCCGACGCGGAGTCTGACGAGGACGAAGACTTCAAGGAGCAGACGAGGATTCTCAAAgccAGTATTCCCTTTGCGGTGGTTGGCTCCAACCAGCAGATCGAGGCCAAGGGGAAGAAGGTGCGGGGTCGCCTGTATCCCTGgggtgtggtggaggtggagaaccCCGAGCACAACGACTTCCTCAAGCTACGCACCATGCTCATCACCCACATGCAGGACCTGCAGGAGGTGACCCAGGACCTACACTACGAGAATTTCCGTTCGGAGCGCCTCAAACGAGGCGGCAGGTTGTCCTCTCATGGTTACGTTCTGTCTCCTGCGAAGGGACCGGAGCCGGAGGAAATGGACAAGGACATGATCCTGCAGGAGAAGGAGGCTGAGCTGAGGAGAATGCAGGAGATGATTACCAAGATGCAGGCCCAGATGCAGATTAAGCCTGATGGAGCGGGAGACGGCCAGCATGTGTGACACTCACCACGGTTTTCAAGCTGTTATTTGAGCTTGACCAGAGATGGAGGGATTGCAGAAGAGAAGGGAGTGAAAACAAGAGCAAGATAACTGGTCCTTGTCTCATTCTGCTTGCTACTATATTTAGTTTATTTCAGTCCTACTTGGGATCATTTTGAAttctttattttttgtttttgtatctAAGCAgtattacatttttatatttacacacattttcTTTATAATATTCCAAATGGCTCATTATTCATTTGTTCCATTCTATTGGAATGGACCATGCCAGATAGTCATCAAATGAAGAATAACTCTTTTAACCAGGGAAATGCTTTCATTATAGAACCATTgttctttattacattttttttctgttgAGAAAGCCAAAAGTTGCTGCTGCTCCTCAGTACTGTCATAGCCAAGTCTTTACACTCGGCCTCCGCTAAAACCACTCAGGAACGGTCGATCGTGTTACTTACTGTGGCTCCGCATTACGAGTGGGAAAGGCCAGCTTACTGTGAAAGTTAGCAACGCTCTTCTCTTTCGTGGAGCCAGACAGCtaaaattgtattattattatttttttccctcTAGTGGTTGTCATGCCAATGTTAAAATATCTTTAAACAATAGTCTTTGAAAAGCAGCATAAAGATGTTTCCTTATTGCTAGGATTCGTTGACCGTGTTCTCGTTCTCCTACTCCCTCGCATGCAGCTCTTAACCCAGTCTGAAGTGTCTGAAATATGACTGAAATACATGACACTGTGACCTTCCCAGTTATCCTGTAGCCCTGAACCAATGAAGGAGACATACCTTGGTGTTTTTTACTGCATGTGCCTCTATGAATACTGAGCCtgtaaagtgtctcagagtaggagtggcaATCTAGGATCAGTtaagccttttagatcataatgaatatggtTCTATAGACTGGGGGGGACgcaatcctagatcagcactcctactcggaGACGCTTTATGACAGCCCCCAGGTTTTAACATATTACAAAGTGAATTGATGTTTTAGGCAAAAGTCCTAGCGAACTAAAAGTAAATTGAATTACTGTGATGTTCAAACCAGGCCTATGCATCGAAAAGGACTTTGCTTTTCCTCATGGCCCCCAGTAATATTGATTGTTGAATTAAGTGCATCCAGAGGGTTGTGGAGTTCGTGCTGTAAAGCCCATGCTGTACTTGGTGTAATATGATATCCATATCCTTCTATTCTTTATGGCTGAGTGTCAATGGGTTAAGACTGAAAAGTGGATGACGTTTGGATGTTGGACAGGCCCAGTTAGTTGCTATGACCGCTTGCCTGGTCATTGTGATGACCTAGTTCGCAAGCCGAGTCAGTTATTAACATTCCTGTTTCTGCTGTTTTATCCAATGACTATCAAATAAAACCTTTGACGTATGCCATCTTGTAATAAAGTTTATATTAAAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU819473 lncRNA downstream 6226 52719286 ~ 52726784 (-) False G721260
TU819474 lncRNA downstream 6226 52720787 ~ 52726784 (-) False G721260
TU819472 lncRNA downstream 6226 52724948 ~ 52726784 (-) True G721260
TU819443 lncRNA downstream 76421 52589219 ~ 52656589 (-) True G721238
TU819457 lncRNA downstream 187276 52540080 ~ 52545734 (-) True G721248
TU819504 lncRNA upstream 21776 52778378 ~ 52778596 (-) True G721288
TU819505 lncRNA upstream 22434 52779036 ~ 52779473 (-) True G721289
TU819478 lncRNA upstream 36715 52793317 ~ 52818700 (-) False selenof
TU819476 lncRNA upstream 36776 52793378 ~ 52818726 (-) False selenof
TU819477 lncRNA upstream 36776 52793378 ~ 52818700 (-) True selenof
trnav-cac-85 mRNA downstream 3040 52729898 ~ 52729970 (-) True trnav-cac-85
trnav-cac-84 mRNA downstream 5980 52726958 ~ 52727030 (-) True trnav-cac-84
trnav-cac-83 mRNA downstream 7565 52725373 ~ 52725445 (-) True trnav-cac-83
trnav-aac-152 mRNA downstream 8871 52724067 ~ 52724139 (-) True trnav-aac-152
trnav-cac-82 mRNA downstream 9073 52723865 ~ 52723937 (-) True trnav-cac-82
NM_001124454.4 mRNA upstream 37143 52793745 ~ 52818707 (-) False selenof
XM_021612892.2 mRNA upstream 149765 52906367 ~ 52917437 (-) True LOC110530090
XM_021612900.2 mRNA upstream 192399 52949001 ~ 52953245 (-) False LOC110530094
XM_036985651.1 mRNA upstream 192399 52949001 ~ 52967822 (-) False LOC110530094
XM_021612898.2 mRNA upstream 192399 52949001 ~ 52967823 (-) False LOC110530094
TU817704 other downstream 1473991 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 1793539 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 2843758 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 2895314 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 3944048 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 4437 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 706580 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 741546 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 1046841 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 1169626 53926228 ~ 53927959 (-) True G722670

Expression Profile

XM_021612883.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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XM_021612883.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021612883.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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