Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021612892.2 |
| length | 1490 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 7 |
| gene id | LOC110530090 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 52906367 ~ 52917437 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006352 | DNA-templated transcription, initiation | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006413 | translational initiation | biological_process |
| GO:0017025 | TBP-class protein binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| K03124 | TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU819476 | lncRNA | downstream | 87641 | 52793378 ~ 52818726 (-) | False | selenof |
| TU819478 | lncRNA | downstream | 87667 | 52793317 ~ 52818700 (-) | False | selenof |
| TU819477 | lncRNA | downstream | 87667 | 52793378 ~ 52818700 (-) | True | selenof |
| TU819505 | lncRNA | downstream | 126894 | 52779036 ~ 52779473 (-) | True | G721289 |
| TU819504 | lncRNA | downstream | 127771 | 52778378 ~ 52778596 (-) | True | G721288 |
| TU819641 | lncRNA | upstream | 57360 | 52974797 ~ 52977530 (-) | True | G721414 |
| TU819652 | lncRNA | upstream | 69480 | 52986917 ~ 52989556 (-) | True | G721425 |
| TU819663 | lncRNA | upstream | 91252 | 53008689 ~ 53010120 (-) | True | G721435 |
| TU819632 | lncRNA | upstream | 97181 | 53014618 ~ 53100336 (-) | False | G721407 |
| TU819631 | lncRNA | upstream | 159995 | 53077432 ~ 53080513 (-) | False | G721407 |
| NM_001124454.4 | mRNA | downstream | 87660 | 52793745 ~ 52818707 (-) | False | selenof |
| XM_021612883.2 | mRNA | downstream | 149765 | 52733010 ~ 52756602 (-) | False | LOC110530084 |
| XM_021612884.2 | mRNA | downstream | 149765 | 52733010 ~ 52756602 (-) | True | LOC110530084 |
| XM_021612882.2 | mRNA | downstream | 149772 | 52733010 ~ 52756595 (-) | False | LOC110530084 |
| XM_021612885.2 | mRNA | downstream | 149806 | 52733010 ~ 52756561 (-) | False | LOC110530084 |
| XM_021612900.2 | mRNA | upstream | 31564 | 52949001 ~ 52953245 (-) | False | LOC110530094 |
| XM_036985651.1 | mRNA | upstream | 31564 | 52949001 ~ 52967822 (-) | False | LOC110530094 |
| XM_021612898.2 | mRNA | upstream | 31564 | 52949001 ~ 52967823 (-) | False | LOC110530094 |
| XM_021612899.2 | mRNA | upstream | 31564 | 52949001 ~ 52967823 (-) | True | LOC110530094 |
| XR_005052899.1 | mRNA | upstream | 82162 | 52999599 ~ 53001669 (-) | True | LOC110530097 |
| TU819491 | other | downstream | 144916 | 52761039 ~ 52761451 (-) | True | G721275 |
| TU817704 | other | downstream | 1647348 | 51252355 ~ 51259019 (-) | True | LOC110530043 |
| TU817090 | other | downstream | 1966896 | 50936928 ~ 50939471 (-) | True | G719151 |
| TU816422 | other | downstream | 3017115 | 49866630 ~ 49889252 (-) | False | LOC110530011 |
| TU816366 | other | downstream | 3068671 | 49785674 ~ 49837696 (-) | True | G718489 |
| TU820029 | other | upstream | 545745 | 53463182 ~ 53463764 (-) | False | LOC110529122 |
| TU820769 | other | upstream | 580711 | 53498148 ~ 53499730 (-) | True | G722459 |
| TU820950 | other | upstream | 886006 | 53803443 ~ 53856065 (-) | True | G722602 |
| TU821019 | other | upstream | 1008791 | 53926228 ~ 53927959 (-) | True | G722670 |
| TU821119 | other | upstream | 1206942 | 54124379 ~ 54139341 (-) | True | G722761 |
