RNA id: XM_021612897.2


Basic Information

Item Value
RNA id XM_021612897.2
length 3635
RNA type mRNA
GC content 0.50
exon number 32
gene id hfm1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52968196 ~ 52994389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACTCATTAGTTCCcgttggaaacgacaggctgtggtctatcttggtttagttatagaAATAATTGCTCTCCCTCGAGCGGGTATCATCAGCGTCTAGGCTCGAGACTAGTTAGTTATAGTAGTACCCCCACCGAAACAGATGACTGTTGCATAGGCCTACATGACCTAATGAGATGTTGGACTCAGAAGACTGCACTTTGTCCCTGGATAACCTCTTCTTTGAGAGGCCAGTTGTCCACAAAGTaAAGCCACTTTGTCAAGAGCAGAGTTCTTGGCAGTTGGaaccccctctgtccctctcccagaTCCCAGCCACTCAGGACATCCAGAAAGAGGCAGAGGGTCTTTCATCATTCAGTTTCTCTCAGAAGTCCAACAAATTCCTTCCCCCTTTGAAAAGAGCAGCTGACGGTGATGGTTTCACTCCCAAGAATAACAAATTAAATCAGAATACCAGTGATGGAAGAAAAGAACCTGAGGCACAGGGCGGGTGTGTCCTTTGGTCTCGGGAAGACTTCATGAATAAATCCCAGGATACCACAAAGGTTAGAGGTCGAACTAAAACCCCACATGAGTCTGGTCATGCACTGGAGCAGAAACATTTCCCTCTGGAGTTCAGCCAAAGCCCACCTCTACGGAGAAGTTTGTTCAAACCTCCCAGTGGTCAGGTGTTGAACAGCAGTGCAAACTCAATCAGAGGCCTCAACCAGGCACGACCCAGAGTGCAGCAAACCTTCGACCAGGTTTCTATGGCGACAGAGCCTCGGCTGGCAAAGCAGTCGGCAGCAGGCTCCGGCCCCCTCACCGATCTGGGACCGCCTACAGCCCGGGGACCACCACAGAAGACACAGGACAAGGGCACCAAGAGGGCTCATGTTCTCCCCATGACACCCCAACCCCTTCACATACAAAGTACTTCTGGGCCTGGGATACTCCGACCAATCTCTGAAATCCCTGCTAAATTTAGATCGGTCTTCAAAGAGTTCCCTTACTTCAACTACGTTCAATCAAAAGCCCTAGATGACGTTCTATACACGGGTAAGAACTTTGTGGCTTGTGCTCCTACGGGCTCTGGTAAGACTGTGCTTTTCGAGTTGGCCATCATCCGCCTACTGATGGAGACCACAGAGCCCTGGAGAAACGTCAAAGCTGTGTACATGGCCCCCATCAAAGCTCTATGCAGCCAGCGCTTTGAGGACTGGAAGAACAAATTTGGGCCTCTGGGCCTGAGCTGCAAGGAGCTGACTGGAGACACAGAGATCGACGACTTCTTTGAGATTCAAGACGCCAATATCATCATGACCACACCTGAAAAATGGGACAGCATGACGAGGAAGTGGAGGGATAACTGCCTGCTGCAGTTGGTCCGGCTTTTCCTTATTGATGAGGTGCACGTGGTGAAGGACCCTATGCGCGGAGCCACACTAGAGGTGGTGGTGAGCAGGATGAAGGCGGTCCATGCCTACCGTGCAGCAGAGAACCCTCAGGAGGATGTATCCATGAGATTTGTGGCCGTCTCCGCCACCATCCCCAATACCAAAGATATAGCAGACTGGCTGTGTGACGACAGAGACCCTGCTACTTGTCTGGAGATGGATGAGAGTCACAGACCGGTGAAATTGAGGAAAGTAGTGCTGGGTTTCCCCTGCAACAGCAACCAGACTGAGTTCAAGTTCGACCTGTCACTCAACTACAAGATGGCCAACATCATCCAGACCTACTCGGACCAGAAACCAACACTTGTTttTTGTTCAACAAGGAAAGGAGTCCAGCAGTCGGCCACTGTTCTGGCCAAGGATGCCAGGTTCATCATGAGTATTGAGCACAAACAAAGGTTGGTGAATTATGCAAACTCTCTCCTGGACTCAAAACTCAGAGACTTGGTGTCGTTTGGAGTTGGTTTCCACCACGCCGGAGTTGACGTGTCAGACAGGAAGCGAATCGAGGAGGCCTTCAACATGGGAGACCTGCCTGTGCTGTTTACAACTAGTACTCTGGCGATGGGGGTGAACCTGCCAGCCCATCTGGTGGTAATCAAGTCCACCACGCACTACATCGGGGGCGCCTGTGAGGAGTACAGCGAGGCCGACATGCTGCAGATGATTGGCCGAGCAGGCCGGCCACAGTTTGATACATCAGCGACCGCAGTGATCATGACCAAGACTCAAACCAAAGACAAGTACATGCAGTTCATGAATGGAGCGGAAATCATCGAAAGCAGCCTGCATACCCACCTGGTGGAGCACCTGAACGCTGAGATTGTCCTCCACACCATTTCAGACGTCAACATGGCCCTGGACTGGATCCGCTCCAGCTTCCTCTACATCCGAGCTCTGAAGAACCCCAGACACTATGGCTTTTCCACTGACTTGGACCGATGTGGAATCGAAGCCAAATTGCAAGAGCTCTGTCTGAAGAACTTGAATTCCCTGGCCTCCATTGGTCTGATCTCCATGGATGAGGATGTTAACATCAAAGCTACAGAGGCAGGCAGGCTGATGGCAAGGTACTGTGTTGCGTTTGACACCATGAAGCAGTTCAGCAAGGTGACAGGCACTGAGACCTTACCTGAGCTGATAGAATTGATGGTGAAGGGCAGAGAGTTCACTGACGTGCAGCTGAGAGTGAACGAGAAGAGAACCCTGAACACGTTGAACAAGGACAAGAACAGGATCACTATCAGGTATCCCATGGAGGGAAAGATCAAAAACAAAGAGATGAAGGTGAACTGTTTGATTCAAGCCCAGTTTGGCTCCATTCCAATCCAAGAGTTTGGACTTGCACAGGACACAGGGAGAATCTTCAGAAATGGAGTCCGAATCAGCAGATGCTTGGCAGAGTTCCTGAACCAGCGCTCCAAGACAGGCTTCTCTGCTCTACTCAACTCCCTGATACTGGCCAAGTGCTTCAGGGCCAAGCTGTGGGAGGACTCTCCTTACGTCTCAAAGCAGCTGGAGAAAATAGGGTTGTCTCTGTCGACGGCCATGGTGAACGCTGGGCTCACCACCTTCAACAAGATAGAGCAGACCAACGCCAGGGAACTGGAGCTGATTGTCAACAGACATCCTCCGTTTGGAAACCAAATCAGAGACGCTGTCATGAATCTACCCAAGTATGAAGTTAGTTTGGAGCAGCTTCCAAGATACAACATCGCCACCGCAGAGATTGTCGTGACTGTGAATGTGAAAAACCACGAACAGCTACTGTCAAAGAGAACCACTCATGACCACCACTATGTCACAATGATCATCGGGGACTGTGACAACAACGTGGTCTTCCTGCAAAAACTCACAGACTTGATGCTGTTGAAGTCGGGAAACTGGTCAAAGAAGATCGAAGTGGCGAAAGCCTTCAAAGGAGAGGAGATCAGCGTGAATCTAATCAGCTCAGAATACGTGGGGTTGGACATTCAGCAGAAGTTTAGTGCCTTCTACTCTGGACCAAAGAGTTCCAGGCAAAAGACAATGTAACCACTTCTGCAAAAACAAGGATCAGTGTGGCCACGACTGCTGTCAAAATGGAGTGCCGGTGGTTCTGAAGAGACCTATGAATCAGCATTCGAGTTTCTCCTCCTACCTCCAAGACCTGAAGACCAGGAGTGATACACTGACGGAGACTCCAGTCAAACGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU818928 lncRNA upstream 114903 52838834 ~ 52853293 (+) True G720829
TU818902 lncRNA upstream 186895 52781097 ~ 52781301 (+) True G720803
TU818901 lncRNA upstream 188851 52779047 ~ 52779345 (+) True G720802
TU818893 lncRNA upstream 197024 52770945 ~ 52771172 (+) True G720795
TU818890 lncRNA upstream 199737 52768145 ~ 52768459 (+) True G720792
TU818967 lncRNA downstream 129974 53119204 ~ 53119627 (+) True ccdc18
TU819086 lncRNA downstream 138843 53128073 ~ 53128294 (+) True G720979
TU819113 lncRNA downstream 201932 53191162 ~ 53251843 (+) True gng12a
TU819170 lncRNA downstream 293875 53283105 ~ 53283355 (+) True G721056
TU819845 lncRNA downstream 328873 53318103 ~ 53318320 (+) True G721613
XM_036985648.1 mRNA upstream 28507 52933573 ~ 52939689 (+) False LOC110530091
XM_021612893.2 mRNA upstream 28507 52933574 ~ 52939689 (+) True LOC110530091
XM_021612891.2 mRNA upstream 63606 52857292 ~ 52904590 (+) False LOC110530089
XM_021612890.2 mRNA upstream 63606 52867957 ~ 52904590 (+) True LOC110530089
XM_036985647.1 mRNA upstream 117089 52819122 ~ 52851107 (+) False LOC110530088
XM_021612904.2 mRNA downstream 11930 53001160 ~ 53015071 (+) False rpap2
XM_021612905.2 mRNA downstream 11931 53001161 ~ 53015071 (+) False rpap2
XM_021612903.2 mRNA downstream 12656 53001886 ~ 53015071 (+) False rpap2
XM_021612902.2 mRNA downstream 12736 53001966 ~ 53015071 (+) True rpap2
XM_036985652.1 mRNA downstream 65307 53054537 ~ 53059566 (+) True rpl5a
TU815927 other upstream 2327030 50636696 ~ 50641166 (+) True LOC110530024
TU815871 other upstream 2574360 50385546 ~ 50393836 (+) True LOC110530019
TU815524 other upstream 3114004 49853387 ~ 49854192 (+) True LOC118965615
TU814748 other upstream 3421111 49546212 ~ 49547085 (+) True G716993
TU814604 other upstream 3634424 49332841 ~ 49333772 (+) True G716862
TU819925 other downstream 388002 53377232 ~ 53377705 (+) False G721689
TU820195 other downstream 681166 53670396 ~ 53671859 (+) False mrpl34
TU820196 other downstream 681166 53670396 ~ 53671859 (+) True mrpl34
TU820345 other downstream 936987 53926217 ~ 53927959 (+) True rps28
TU820675 other downstream 1634944 54624174 ~ 54670114 (+) True LOC118965528

Expression Profile