RNA id: XM_036985649.1


Basic Information

Item Value
RNA id XM_036985649.1
length 5702
RNA type mRNA
GC content 0.48
exon number 40
gene id hfm1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52968196 ~ 52994389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggctgtggtctatcttggtttagttatagaAATAATTGCTCTCCCTCGAGCGGGTATCATCAGCGTCTAGGCTCGAGACTAGTTAGTTATAGTAGTACCCCCACCGAAACAGATGACTGTTGCATAGGCCTACATGACCTAATGAGATGTTGGACTCAGAAGACTGCACTTTGTCCCTGGATAACCTCTTCTTTGAGAGGCCAGTTGTCCACAAAGTaAAGCCACTTTGTCAAGAGCAGAGTTCTTGGCAGTTGGaaccccctctgtccctctcccagaTCCCAGCCACTCAGGACATCCAGAAAGAGGCAGAGGGTCTTTCATCATTCAGTTTCTCTCAGAAGTCCAACAAATTCCTTCCCCCTTTGAAAAGAGCAGCTGACGGTGATGGTTTCACTCCCAAGAATAACAAATTAAATCAGAATACCAGTGATGGAAGAAAAGAACCTGAGGCACAGGGCGGGTGTGTCCTTTGGTCTCGGGAAGACTTCATGAATAAATCCCAGGATACCACAAAGGTTAGAGGTCGAACTAAAACCCCACATGAGTCTGGTCATGCACTGGAGCAGAAACATTTCCCTCTGGAGTTCAGCCAAAGCCCACCTCTACGGAGAAGTTTGTTCAAACCTCCCAGTGGTCAGGTGTTGAACAGCAGTGCAAACTCAATCAGAGGCCTCAACCAGGCACGACCCAGAGTGCAGCAAACCTTCGACCAGGTTTCTATGGCGACAGAGCCTCGGCTGGCAAAGCAGTCGGCAGCAGGCTCCGGCCCCCTCACCGATCTGGGACCGCCTACAGCCCGGGGACCACCACAGAAGACACAGGACAAGGGCACCAAGAGGGCTCATGTTCTCCCCATGACACCCCAACCCCTTCACATACAAAGTAGTACCGCACAGACTGAACCCAACACCATgtctgtgtttatatatatataaatcatatACATATTGCTATGATGAGGTGTTGTAGCTGAAGAATGTACTCAGATGTAATGGTCATGGCTGCAGCCTGTCACTGTTCGTTAGAGCTTGATGAGGTGAAACTAGGTACTTCTGGGCCTGGGATACTCCGACCAATCTCTGAAATCCCTGCTAAATTTAGATCGGTCTTCAAAGAGTTCCCTTACTTCAACTACGTTCAATCAAAAGCCCTAGATGACGTTCTATACACGGGTAAGAACTTTGTGGCTTGTGCTCCTACGGGCTCTGGTAAGACTGTGCTTTTCGAGTTGGCCATCATCCGCCTACTGATGGAGACCACAGAGCCCTGGAGAAACGTCAAAGCTGTGTACATGGCCCCCATCAAAGCTCTATGCAGCCAGCGCTTTGAGGACTGGAAGAACAAATTTGGGCCTCTGGGCCTGAGCTGCAAGGAGCTGACTGGAGACACAGAGATCGACGACTTCTTTGAGATTCAAGACGCCAATATCATCATGACCACACCTGAAAAATGGGACAGCATGACGAGGAAGTGGAGGGATAACTGCCTGCTGCAGTTGGTCCGGCTTTTCCTTATTGATGAGGTGCACGTGGTGAAGGACCCTATGCGCGGAGCCACACTAGAGGTGGTGGTGAGCAGGATGAAGGCGGTCCATGCCTACCGTGCAGCAGAGAACCCTCAGGAGGATGTATCCATGAGATTTGTGGCCGTCTCCGCCACCATCCCCAATACCAAAGATATAGCAGACTGGCTGTGTGACGACAGAGACCCTGCTACTTGTCTGGAGATGGATGAGAGTCACAGACCGGTGAAATTGAGGAAAGTAGTGCTGGGTTTCCCCTGCAACAGCAACCAGACTGAGTTCAAGTTCGACCTGTCACTCAACTACAAGATGGCCAACATCATCCAGACCTACTCGGACCAGAAACCAACACTTGTTttTTGTTCAACAAGGAAAGGAGTCCAGCAGTCGGCCACTGTTCTGGCCAAGGATGCCAGGTTCATCATGAGTATTGAGCACAAACAAAGGTTGGTGAATTATGCAAACTCTCTCCTGGACTCAAAACTCAGAGACTTGGTGTCGTTTGGAGTTGGTTTCCACCACGCCGGAGTTGACGTGTCAGACAGGAAGCGAATCGAGGAGGCCTTCAACATGGGAGACCTGCCTGTGCTGTTTACAACTAGTACTCTGGCGATGGGGGTGAACCTGCCAGCCCATCTGGTGGTAATCAAGTCCACCACGCACTACATCGGGGGCGCCTGTGAGGAGTACAGCGAGGCCGACATGCTGCAGATGATTGGCCGAGCAGGCCGGCCACAGTTTGATACATCAGCGACCGCAGTGATCATGACCAAGACTCAAACCAAAGACAAGTACATGCAGTTCATGAATGGAGCGGAAATCATCGAAAGCAGCCTGCATACCCACCTGGTGGAGCACCTGAACGCTGAGATTGTCCTCCACACCATTTCAGACGTCAACATGGCCCTGGACTGGATCCGCTCCAGCTTCCTCTACATCCGAGCTCTGAAGAACCCCAGACACTATGGCTTTTCCACTGACTTGGACCGATGTGGAATCGAAGCCAAATTGCAAGAGCTCTGTCTGAAGAACTTGAATTCCCTGGCCTCCATTGGTCTGATCTCCATGGATGAGGATGTTAACATCAAAGCTACAGAGGCAGGCAGGCTGATGGCAAGGTACTGTGTTGCGTTTGACACCATGAAGCAGTTCAGCAAGGTGACAGGCACTGAGACCTTACCTGAGCTGATAGAATTGATGGTGAAGGGCAGAGAGTTCACTGACGTGCAGCTGAGAGTGAACGAGAAGAGAACCCTGAACACGTTGAACAAGGACAAGAACAGGATCACTATCAGGTATCCCATGGAGGGAAAGATCAAAAACAAAGAGATGAAGGTGAACTGTTTGATTCAAGCCCAGTTTGGCTCCATTCCAATCCAAGAGTTTGGACTTGCACAGGACACAGGGAGAATCTTCAGAAATGGAGTCCGAATCAGCAGATGCTTGGCAGAGTTCCTGAACCAGCGCTCCAAGACAGGCTTCTCTGCTCTACTCAACTCCCTGATACTGGCCAAGTGCTTCAGGGCCAAGCTGTGGGAGGACTCTCCTTACGTCTCAAAGCAGCTGGAGAAAATAGGGTTGTCTCTGTCGACGGCCATGGTGAACGCTGGGCTCACCACCTTCAACAAGATAGAGCAGACCAACGCCAGGGAACTGGAGCTGATTGTCAACAGACATCCTCCGTTTGGAAACCAAATCAGAGACGCTGTCATGAATCTACCCAAGTATGAAGTTAGTTTGGAGCAGCTTCCAAGATACAACATCGCCACCGCAGAGATTGTCGTGACTGTGAATGTGAAAAACCACGAACAGCTACTGTCAAAGAGAACCACTCATGACCACCACTATGTCACAATGATCATCGGGGACTGTGACAACAACGTGGTCTTCCTGCAAAAACTCACAGACTTGATGCTGTTGAAGTCGGGAAACTGGTCAAAGAAGATCGAAGTGGCGAAAGCCTTCAAAGGAGAGGAGATCAGCGTGAATCTAATCAGCTCAGAATACGTGGGGTTGGACATTCAGCAGAAGTTTAGTGCCTTCTACTCTGGACCAAAGAGGTACGGAGGTGAATCATTCACACCTGAGCAACATGACACTATGCACATAGCACAGGCTGACGCTCAGAGATCACAGGGTGCAACACAGAGAACACAGCCAACAGGTCAGCAAACACAGGCTACGGCACAGAAGAGAAACTCCACATCCACAGAAAAGGTTCCAGGCAAAAGACAATGTAACCACTTCTGCAAAAACAAGGATCAGTGTGGCCACGACTGCTGTCAAAATGGAGTGCCGGTGGTTCTGAAGAGACCTATGAATCAGCATTCGAGTTTCTCCTCCTACCTCCAAGACCTGAAGACCAGGAGTGATACACTGACGGAGACTCCAGTCAAACGCCTCAAAATGAGAATGAGTGGTAGGACTGGGGCTACGAACATTCAGCACTTTTCTTATACGCCTGCTGCTTGTAGGTTTGTAGGTAATCATTACGGCGCTTCAACAATACAACAGAGTGTGGAATCAGCTGAGGACTTTGCAACGCCCCAAGAGATGGCATATCTTGAGAACTATGACCATGAGTATAATGACTACCTGGAAGACATATATCAGACAATGGGAGAAGAGGAACCACCCCTACAAACCCCTACAGAGTCACAAAGCACTTCAATGTGGAGGAAACCCAGTGCATACAACGGAGGGTCACTCAGCCACAGCACCCCCCAAAGCCAGGGCATGGGTTACTCCCAAAGCCACAGCACTACTCAAAGCCAGAGCACGGGTTACCCACAGAGCCACAGCACCCACCAAACCCATAGCATGGGTTACCCCCAAAGTCATTTCCCCCTTCAAAACCAGAGTAGGGAGGAAACCCAGAGTCACAATACCCCCCAAAGCCAGACTAGCGGTTACAGCACTCCCCAAAGCCAGAGCAGGAGTTACTCTCCGAGTCCCATCGTAGACTTGACCGATGACAGTGGCTTCCTCTCGTCGTCACACACCCCCAGCGTGACCTTTGACCTGGGAGACGAATGGGATGATTTTGACGATGACAACTTAGTTCACGCCAGTGAGACATCATGCACCACTGTAGCTAACACTCAGGGGATTGACCGTGACAAGCTGAAAGGTCACTCAACGCCACTACCATCCACTTATGTACAACCCAAACCCCGCTTCACTGTGTCCTGTGCCCCACTCAGGTCAACCTCCCCAGTTATTCCTCAGATAGCAGTTACTAGTCTCTCAGTCAGACCACATAACCTCCAGGCTTCTGCTCCCTGGAGCCACTCTGACAACAAGGCCACAAGGACATTCAGTGAACCCTCTGTGAAAGCACCCTCCTTCACAAAACAGACTGATACAAGCATGGCTCCGCTGGGAGGACAGTTTGATTTCTTCTCAAAGACGACTACCCCAAACAATGGCAATGCGACTGGCAAAAGGCTCCAGGGAGAGGACAACAGCAAGGAAGTGGATGCATTCATGGGTATATTTGATGGACTATTTTAGAAGTGTTTATAGTTGTATGGACAGGTTCCATGACAATGTTTCATGTTACTGTGTATGTTATACTTTATTTATACTGTTTGCTGTTTGAGATGAACTGTTAGATTTACTGTTGATCCTATTTGAAAATGTTTCTATCATTCAGGAGTAGGAACATTCAATCATCATTAGCAGGTGGTCAAAAAAGTATTATATATCTATGTACTTAATTGAATAAACACAATATTTATTCAGAGGAAGTCTGAGGGGATTATATCTAAATATTATAATTTTTATATTGACATCTAGGAAAGTATCAAACCTTAAAAACGCGTGTGCGTGGACAATCCTATGAGTGGAGTGTTTCCACATGATATGGGTAAAGTTTAATGTGGTAGGGGGGCTGGCGAGTGGTAtttcgttttttgggggggtagaAGTTAGTAAGGAATTATTTGGTTTTGAATGTTATTTTCATGGTTGTATAGAATTGGGCAGATCATGATTGTTCGTacacagtggcgattttagcatacAAGTCTTGGTGGGGAAAactcaaatgttattttttgttgttattgttgatgcatgccagcaaagccactacacaacactaaacaatacattaattgcactatgaCGGTGACacacggtgcccacaaactgttaaggcctacataaacctg

Function

GO: NA

KEGG:

id description
K15271 HFM1, MER3; ATP-dependent DNA helicase HFM1/MER3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU818928 lncRNA upstream 114931 52838834 ~ 52853293 (+) True G720829
TU818902 lncRNA upstream 186923 52781097 ~ 52781301 (+) True G720803
TU818901 lncRNA upstream 188879 52779047 ~ 52779345 (+) True G720802
TU818893 lncRNA upstream 197052 52770945 ~ 52771172 (+) True G720795
TU818890 lncRNA upstream 199765 52768145 ~ 52768459 (+) True G720792
TU818967 lncRNA downstream 124815 53119204 ~ 53119627 (+) True ccdc18
TU819086 lncRNA downstream 133684 53128073 ~ 53128294 (+) True G720979
TU819113 lncRNA downstream 196773 53191162 ~ 53251843 (+) True gng12a
TU819170 lncRNA downstream 288716 53283105 ~ 53283355 (+) True G721056
TU819845 lncRNA downstream 323714 53318103 ~ 53318320 (+) True G721613
XM_036985648.1 mRNA upstream 28535 52933573 ~ 52939689 (+) False LOC110530091
XM_021612893.2 mRNA upstream 28535 52933574 ~ 52939689 (+) True LOC110530091
XM_021612891.2 mRNA upstream 63634 52857292 ~ 52904590 (+) False LOC110530089
XM_021612890.2 mRNA upstream 63634 52867957 ~ 52904590 (+) True LOC110530089
XM_021612889.2 mRNA upstream 117117 52819141 ~ 52851107 (+) True LOC110530088
XM_021612904.2 mRNA downstream 6771 53001160 ~ 53015071 (+) False rpap2
XM_021612905.2 mRNA downstream 6772 53001161 ~ 53015071 (+) False rpap2
XM_021612903.2 mRNA downstream 7497 53001886 ~ 53015071 (+) False rpap2
XM_021612902.2 mRNA downstream 7577 53001966 ~ 53015071 (+) True rpap2
XM_036985652.1 mRNA downstream 60148 53054537 ~ 53059566 (+) True rpl5a
TU815927 other upstream 2327058 50636696 ~ 50641166 (+) True LOC110530024
TU815871 other upstream 2574388 50385546 ~ 50393836 (+) True LOC110530019
TU815524 other upstream 3114032 49853387 ~ 49854192 (+) True LOC118965615
TU814748 other upstream 3421139 49546212 ~ 49547085 (+) True G716993
TU814604 other upstream 3634452 49332841 ~ 49333772 (+) True G716862
TU819925 other downstream 382843 53377232 ~ 53377705 (+) False G721689
TU820195 other downstream 676007 53670396 ~ 53671859 (+) False mrpl34
TU820196 other downstream 676007 53670396 ~ 53671859 (+) True mrpl34
TU820345 other downstream 931828 53926217 ~ 53927959 (+) True rps28
TU820675 other downstream 1629785 54624174 ~ 54670114 (+) True LOC118965528

Expression Profile